TCONS_00041133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041133
Unique NameTCONS_00041133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041133 ID=TCONS_00041133|Name=TCONS_00041133|organism=Clytia hemisphaerica|type=transcript|length=651bp
AAGCTCTTCAATTGAAAATACCAAAAGAGTTTTATTTTAGCAACACAGAA
TTTAGCTACATGGTCACAACCATGTATGATGGATTTTTTGGATTTGAGGC
TATGACTGTCAGAGATTTGCAAGATGCCATTTGTGGTCATTGTGGAATCG
CAGGAAAAGTTTATTTTGGAGATGGAAATGAGAAGAACTGCTGTTCAATT
AAAGATGATATGTTGAAGTTAAATGTGCAAGAATTGTATGCCACAATCTT
AGTTGGAATATCAGCATGTCACCAGTTTGTAAAATCGCCTGGCCATACTG
GTGGCTTCTATCACATTGTGTGCCCTCATGGAATAACTGTGGcatcaaaa
ttcatgattttgacaGAGTCAGTTCGAGATCCAGCAGACCTTTATAAGTT
TAAAGTACCCACCTGTGATGTTTGTCTGTGATACACCATGTACCCTTGTG
CAACACATTAACAACAGGGCCTCTGAAAAAGCCAAATAATTTTGGGAAGA
CTTTGATGGATGTTTTGAGATTCCAAGTCTAGACAAGGAACCAACAaaga
tgATGGAAGTTCCAAGTATAGTTCCTGCCGAATTCCAACAAGAACAAAAG
GATGTATTGATAGACGGCAATCAAATACATCCATTGTCTCATAAAAAACA
G
Run BLAST on NCBI

protein sequence of TCONS_00041133-protein

>TCONS_00041133-protein ID=TCONS_00041133-protein|Name=TCONS_00041133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
ALQLKIPKEFYFSNTEFSYMVTTMYDGFFGFEAMTVRDLQDAICGHCGIA
GKVYFGDGNEKNCCSIKDDMLKLNVQELYATILVGISACHQFVKSPGHTG
GFYHIVCPHGITVASKFMILTESVRDPADLYKFKVPTCDVCL
Run BLAST on NCBI

transcript from alignment at sc0002716:2267..4793+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041133 ID=TCONS_00041133|Name=TCONS_00041133|organism=Clytia hemisphaerica|type=transcript|length=2527bp|location=Sequence derived from alignment at sc0002716:2267..4793+ (Clytia hemisphaerica)
AAGCTCTTCAATTGAAAATACCAAAAGTAAATATATAACAATTATtccac
aaattttattttcgtaATTGACTAAAAGTATGATAATATGGTGTATACCA
CAGAGGTTTTTAATgaattattaaaatatttttttcttggttGGGATTTA
ATTCCTGTTTTTAACCCTTCTTTCAGGAGTTTTATTTTAGCAACACAGAA
TTTAGCTACATGGTCACAACCATGTATGATGGATTTTTTGGATTTGAGGC
TATGACTGTCAGAGATTTGCAAGATGCCATTTGTGGTCATTGTGGAATCG
CAGGAAAAGTTTATTTTGGAGATGGAAATGAGAAGAACTGCTGTTCAATT
AAAGATGTAAGTGTGTGgtagatttttttctaaaagatttgTTTGTATTT
GTAAACATATTATTTGGTAtatatttatttgataaattatTTGGTCTAAA
AAGTTATGGAAATGCCATGAAACTAGGGTAAGCaagtttataatttttta
ctgAAAAAATCCCTTTTTCAATCTACTTTTTATGTATACTCTTCTGTTTT
GCAACTTCAATTCAGTCAACTAAAGTTTTCTAAAAGTATAAAACTAAAAC
TTCTTTTTTGGTGAGTGTGATGCAATCAAGGTGTTGcgttttaaaaacat
aaaaaagttactctaaATGCATGTCTTTGCACCTCTTATGGAAAGGGGGA
TTCAATTTGTTTagtaaaaagtgttttttaatcAACCAGTCCTTTTAAAA
TCAGACCCAGAAGGGCAAAACTGGTAATTTCGTTTTATTTATATACTTTT
ATTGAAGGTCGACATGGACAATCAATTGGAAAGTATTCATGAAGAGTCTT
CAGCTGATCGACTAGAAAACTTAATGGATGAATTACACTTGCATTTTTTA
GAAAAGGCAACCTATGCTAGACATGTAGATCCCCTCCAATTTCATCTGAG
ACTAATGGCATCATCAATGACCTTTATAGATGCCATTTgaccaaaaaaac
tcaaatataaTCCAAAGACAGACTCAGAACAGCAGATGCAAGCACCACac
aaaaatgcccatttttaAGCATTCTGGCNNTATTATTATAACATAATAAC
GATATATACAAGAGTTTAAAAAAGAGCAGTACCTCTCAATGTTATAAAAT
TGAAACATCGTAAaccgaaaaaaaatgaagcattCAGTATGAGctggaaa
aaaaatgttttgttagCCTTTTACTACTTCCTTAGAGGAACAAAACCTTT
TCAtggtttataagaacaataaatattaatctaaaattaaaaattgaatt
aataATATATTGGCTTTAAATGTACAACAGGCTAAACTTTCCTTATCAAA
TCCAAACagataaaaaggaaaatttcagcttgatgACTGTTTTATTATGT
ATATCACCCGCTGTACTAAACGTCAAAATAGTGTCTTGTGCTAACCGTTT
GACAATCTGCTTGATAAGATAATTGAATGACATTTTTCTAGGATATGTTG
AAGTTAAATGTGCAAGAATTGTATGCCACAATCTTAGTTGGAATATCAGC
ATGTCACCAGTTTGTAAAATCGCCTGGCCATACTGGTGGCTTCTATCACA
TTGTGTGCCCTCATGGAGTAAGttaaatataatataaattttaaattgaa
tcttatttttgaactttagaaatgaagattttatcAATTCAaggtaaaaa
ttttaaatggtGCTACTAAAATTGTATGTAAATGGGTTTTAATGAGTGCT
CTCTTATTTTTCACTAGATAACTGTGGcatcaaaattcatgattttgaca
GAGTCAGTTCGAGATCCAGCAGACCTTTATAAGTTTAAAGTACCCACCTG
TGATGTTTGTCTGTGATACACCATGTACCCTTGTGCAACACATTAACAAC
AGGGCCTCTGAAAAAGCCAAATAATTTTGGGAAGACTTTGATGGATGTTT
TGAGATTCCAAGTCTAGACAAGGAACCAACAaaggtatatttatttttaa
ttttttatcttttaaatcaattttattcTAATCAAGTTCTTTACAGGGCA
TTTTTTGGACCTATATAGAGGTTCTGTATTGGCTTGTTCAATCTTTGTCA
ATTACCAGGTTTTCCCAAGATTGGTTCATATGCTTTTGCTAAgatttttg
cacagtgatgttTACCTTGTAGAACccgattttcaaataaatcgtttagc
ataatttaagcaaaaaaactggCTAGATTTTTTGTGAGATGACGGCCATA
ATGGGTTTAATGTGTTTAAATGTGACCTaattgatttttctgaaaatatc
tttttctttataaatcttCTAAATTTGTGTCATCATTGCTTATATCAACT
TTAAATACACTGATAATCCAGTTGTTTTATTTAAGTACACCTTGCtgtaa
ttattttgttttatttttactttagatgATGGAAGTTCCAAGTATAGTTC
CTGCCGAATTCCAACAAGAACAAAAGGATGTATTGATAGACGGCAATCAA
ATACATCCATTGTCTCATAAAAAACAG

Coding sequence (CDS) from alignment at sc0002716:2267..4793+

>TCONS_00041133 ID=TCONS_00041133|Name=TCONS_00041133|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at sc0002716:2267..4793+ (Clytia hemisphaerica)
GCTCTTCAATTGAAAATACCAAAAGAGTTTTATTTTAGCAACACAGAATT
TAGCTACATGGTCACAACCATGTATGATGGATTTTTTGGATTTGAGGCTA
TGACTGTCAGAGATTTGCAAGATGCCATTTGTGGTCATTGTGGAATCGCA
GGAAAAGTTTATTTTGGAGATGGAAATGAGAAGAACTGCTGTTCAATTAA
AGATGATATGTTGAAGTTAAATGTGCAAGAATTGTATGCCACAATCTTAG
TTGGAATATCAGCATGTCACCAGTTTGTAAAATCGCCTGGCCATACTGGT
GGCTTCTATCACATTGTGTGCCCTCATGGAATAACTGTGGcatcaaaatt
catgattttgacaGAGTCAGTTCGAGATCCAGCAGACCTTTATAAGTTTA
AAGTACCCACCTGTGATGTTTGTCTGTGAGCTCTTCAATTGAAAATACCA
AAAGAGTTTTATTTTAGCAACACAGAATTTAGCTACATGGTCACAACCAT
GTATGATGGATTTTTTGGATTTGAGGCTATGACTGTCAGAGATTTGCAAG
ATGCCATTTGTGGTCATTGTGGAATCGCAGGAAAAGTTTATTTTGGAGAT
GGAAATGAGAAGAACTGCTGTTCAATTAAAGATGATATGTTGAAGTTAAA
TGTGCAAGAATTGTATGCCACAATCTTAGTTGGAATATCAGCATGTCACC
AGTTTGTAAAATCGCCTGGCCATACTGGTGGCTTCTATCACATTGTGTGC
CCTCATGGAATAACTGTGGcatcaaaattcatgattttgacaGAGTCAGT
TCGAGATCCAGCAGACCTTTATAAGTTTAAAGTACCCACCTGTGATGTTT
GTCTGTGAGCTCTTCAATTGAAAATACCAAAAGAGTTTTATTTTAGCAAC
ACAGAATTTAGCTACATGGTCACAACCATGTATGATGGATTTTTTGGATT
TGAGGCTATGACTGTCAGAGATTTGCAAGATGCCATTTGTGGTCATTGTG
GAATCGCAGGAAAAGTTTATTTTGGAGATGGAAATGAGAAGAACTGCTGT
TCAATTAAAGATGATATGTTGAAGTTAAATGTGCAAGAATTGTATGCCAC
AATCTTAGTTGGAATATCAGCATGTCACCAGTTTGTAAAATCGCCTGGCC
ATACTGGTGGCTTCTATCACATTGTGTGCCCTCATGGAATAACTGTGGca
tcaaaattcatgattttgacaGAGTCAGTTCGAGATCCAGCAGACCTTTA
TAAGTTTAAAGTACCCACCTGTGATGTTTGTCTGTGAGCTCTTCAATTGA
AAATACCAAAAGAGTTTTATTTTAGCAACACAGAATTTAGCTACATGGTC
ACAACCATGTATGATGGATTTTTTGGATTTGAGGCTATGACTGTCAGAGA
TTTGCAAGATGCCATTTGTGGTCATTGTGGAATCGCAGGAAAAGTTTATT
TTGGAGATGGAAATGAGAAGAACTGCTGTTCAATTAAAGATGATATGTTG
AAGTTAAATGTGCAAGAATTGTATGCCACAATCTTAGTTGGAATATCAGC
ATGTCACCAGTTTGTAAAATCGCCTGGCCATACTGGTGGCTTCTATCACA
TTGTGTGCCCTCATGGAATAACTGTGGcatcaaaattcatgattttgaca
GAGTCAGTTCGAGATCCAGCAGACCTTTATAAGTTTAAAGTACCCACCTG
TGATGTTTGTCTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025140XLOC_025140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041133-exon-sc0002716-1491911889:2267..2292TCONS_00041133-exon-sc0002716-1491911889:2267..2292Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1510915933:2267..2292TCONS_00041133-exon-sc0002716-1510915933:2267..2292Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1575043694:2267..2292TCONS_00041133-exon-sc0002716-1575043694:2267..2292Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1491911889:2443..2622TCONS_00041133-exon-sc0002716-1491911889:2443..2622Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1510915933:2443..2622TCONS_00041133-exon-sc0002716-1510915933:2443..2622Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1575043694:2443..2622TCONS_00041133-exon-sc0002716-1575043694:2443..2622Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1491911889:3758..3883TCONS_00041133-exon-sc0002716-1491911889:3758..3883Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1510915933:3758..3883TCONS_00041133-exon-sc0002716-1510915933:3758..3883Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1575043694:3758..3883TCONS_00041133-exon-sc0002716-1575043694:3758..3883Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1491911889:4034..4250TCONS_00041133-exon-sc0002716-1491911889:4034..4250Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1510915933:4034..4250TCONS_00041133-exon-sc0002716-1510915933:4034..4250Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1575043694:4034..4250TCONS_00041133-exon-sc0002716-1575043694:4034..4250Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1491911889:4692..4793TCONS_00041133-exon-sc0002716-1491911889:4692..4793Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1510915933:4692..4793TCONS_00041133-exon-sc0002716-1510915933:4692..4793Clytia hemisphaericaexon
TCONS_00041133-exon-sc0002716-1575043694:4692..4793TCONS_00041133-exon-sc0002716-1575043694:4692..4793Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041133-proteinTCONS_00041133-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002716supercontigsc0002716:2267..4793 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0908817	0.0889136	0.108244	0.256607	0.515976	0.28983	0.270556	0	0	0.053457	0.106765	0	0.86598	0.978241	0.602557	1.2352	1.19455	0.892864	0.465637	0.681364	0.460159	0.920374	0	0.0769122	1.54086	0.11746	0.445447	0.272304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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