TCONS_00041127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041127
Unique NameTCONS_00041127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041127 ID=TCONS_00041127|Name=TCONS_00041127|organism=Clytia hemisphaerica|type=transcript|length=838bp
TAGGAGTTGAAATCAAGACGGTATCCCCCGAAGTATACCAAGTTGGAAAA
TCAGCAATTCTTGTCTGGAATATTACATACACAAAAGCAGAAGTTTACAA
GCATTCATTTCTGAACTTGAGTTTCAATGATACCCATTATGTACATGTTG
GTCCTAACAATAAAAAAGCCATTGAGTTGTTATGGGAACAAGGattaagt
gtactctttgacaCGAATAGTGTGGTTGTTCGAGTCCACAAGCTGAACTA
TGGAGACGTGTTGAATTGCTCTGTTGAGGCTTTTGGCCAGACCGCGTCTT
TCAAGAACATCAGTCTCACAAGAAAGACTATCTTACTTCAAAATGTGAAA
GATAAAGCatcaaaagtgacgaaaaattTCACCATTGTCAAATTATCGAC
ATTTTCCGGCACCTGTTGTACCATCTTCAAATTACCAGCACCTGAAACAC
AGTGTAAACAGACCTTTAGCATTTTCGCATACGATGTCAATAAAACCTTA
ATCATGACAAAGCTGTATCATGAGGAGAATCAACTGACAAATTGTAATGA
CAAGGCCTTGTTTACACGGATCAAATTTGCAAGGATACAAGCAGTTAGTT
GGGATGGCCAGCTTGGTGAGATGTCTCAATTCTTTCAAACAACAGACGAA
AGACAAGTGGCAGAACCATCAAAACCCAAAGAAACAAAGGCGACGAAGAT
CAAAAAACCTCTATTTTCGCACACAGTTATAATAATCCTCGTTGCCATGG
GAGCATTACTTGTTGTCATAACTTTGACCGCCATTTTGGTTTCCAAAAAT
TGTCACGgaaagaaaaatgcaagagaaaatgaaggtaa
Run BLAST on NCBI

transcript from alignment at sc0002714:7168..18264-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041127 ID=TCONS_00041127|Name=TCONS_00041127|organism=Clytia hemisphaerica|type=transcript|length=11097bp|location=Sequence derived from alignment at sc0002714:7168..18264- (Clytia hemisphaerica)
TAGGAGTTGAAATCAAGACGGTATCCCCCGAAGTATACCAAGTTGGAAAA
TCAGCAATTCTTGTCTGGAATATTACATACACAAAAGCAGAAGTTTACAA
GCATTCATTTCTGAACTTGAGTTTCAATGATACCCATTATGTACATGTTG
GTCCTAACAATAAAAAAGCCATTGAGTTGTTATGGGAACAAGGATTAAGT
GTACTCTTTGACACGAATAGTGTGGTTGTTCGAGTCCACAAGCTGAACTA
TGGAGACGTGTTGAATTGCTCTGTTGAGGCTTTTGGCCAGACCGCGTCTT
TCAAGAACATCAGTCTCACAAGAAAGACTATCTTACTTCAAAATGTGAAA
GGTATTAACTTGAATTAAGTACAGAATCCCATGGGGATCTTTGCACACTT
GAATTGCTCTGTTGAGGCTTTTGGCCAGACCGCGTCTTTCAAGAAAATCA
GTCTCACAAGAAAGGCTATCTTCCTTCAAAATGTGAAAGGTATTAACTTG
AATTAAGTGCAGAATCCCATGGGGATCTTTGCACACTTGAATTGCTCTGT
TGAGGCTTTTGGCCAGACAGCGTCTTTCAAGAACATCAGTCTCGCAAGAA
AGACTATCTTACTTCAAAATGTGAAAGGTACTAACTTGAATTAAGTGCAG
AATCCCATGCGGATCTTTGCACACTTGAATTGCTCTGTTGAGGCTTTTGG
CCAGACAGCGTCTTTCAAGAACATCAGTCTCACAAGAAAGACTATCTTAC
TTCAAAATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AACTTGAATTAAGTGCAGAATCCCATGGGGATCTTTGCACACTTGAATTG
CTCTGTTGAGGCTTTTGGCCAGACAGCATCTTTCAAGAACATCATTCTCA
CAAAAAAGACTATCTTACTTCAAAATGTGAAAGGTATTAACTTGAATTAA
GTGCAGAATCCCATGAGGATCTTTGCACAATTGAATTGCTCTGTTGAGGC
TTTTGGCCAGACAGCGTCTTTCAAGAACATCAGTCTCACAAGAAAGACTA
TCTTACTTCAAAATGTGAAAGGTATTAACTTGAATTAAGTGCAGAATCCC
ATGAGGATCTTTGCACAATTGAATTGCTCTGTTGAGGCTTTTGGCCAGAC
AGCGTCTTTCAAGAACATCAGTCTCACAAGAAAGACTATCTTACTTCAAA
ATGTGAAAGGTATTAACTTGAATTAAGTGCAGAATCCCATGAGGATCTTT
GCACAATTGAATTGCTCTGTTGAGGCTTTTGGCCAGACAGCGTCTTTCAA
GAAAGACTATCTTACTTCAAAATGTGAAAGGTATTAACTTGAATTAAGTG
CAGAATCCCATGGGGATCTTTGCACACTCGAATTGCTCTGTTGAGGCTTT
TAGCCAGACAGCATCTTTCAAGAACATCAGTCTCACAAGAAAGACTATCT
TACTTCAAAATGTGAAAGGTATTAACTTGAATTAAGTGCAGAATCCCATG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AGGCTTTTGGCCAGACCGCGTCTTTCAAGAACATCAGTCTCACAAGAAAG
ACTATCTTACTTCAAAATGTGAAAGGTACTTACTTGAATTAAGTGCAGAA
TCCCATGGGGATCTTTGCACACTTGAATTGCTCTGTTGAGGCTTTTGGCC
AGACCGCGTCTTTCAAGAACATCAGTCTCACAAAAAAGACCATCTTACTT
CAAAATGTGAAAGGTATTAACTTGACTTACTTGAATTAAGTGCAGAATCC
CATGGGGATCTTTGCACACTTGAATTGCTCTGTTGAGGCTTTTGGCCAGA
CAGCGTTTTTCAAGAACATCAGTCTCACAAAAAAGACTATCTTACTTCAA
AATGTGAAAGGTATTAACTTGAATTAAGTGCAGAATCCCATGGGGATCTT
TGCACACTTGAATTGCTCTGTTGAGGCTTTTGGCCAGACAGCGTCTTTCA
AGAACATCAGTCTCACAAAAAAGACTATCTTACTTCAAAATGTGAAAGGT
ATTAACTTGACTTACTTGAATTAAGTGCAGAATCCCATGGGGATCTTTGC
ACACTTGAATTGCTCTGTTGAGGCTTTTGGCCAGACAGCGTCTTTCAAGA
ACATCAGTCTCACAAAAAAGACTATCTTCCTTCAAAATGTGAAAGGTATT
AACTTGAATTAAGTACAGAATCCCATGGGGATCTTTGCACACTTGAATTG
CTCTGTTGAGGCTTTTGGCCAGACAGCGTCTTTCAAGAATATCAGTCTCA
CAAGAAAGACTATCTTACTTCAAAATGTGAAAGGTATTAACTTGACTTAC
TTGAATTAAGTGCATAATCGCACGGGGATCTTTGCACACTCCTTGGAGAC
AAACTCTTTCCACTTTTCTCTGTTACGGGCACGGCGCTCAGCAGTAGGAA
GTGGGATCCCTGTGTCTTCTTGGATTAGATCGCTCCATATTTTAGGGGGA
CGTCCACGAAGTATGAAGAATTCACACTCATGCGCGTACCACAGATACGA
TTTTAGAAGGGATGATGCATAATGTACTTGACCCAAAACCTCTTAAGCAA
TTAACAGAAAATTCTCCCCTTTGAGGCCGGGATTCAGTCAACTCTTCCCA
CATTCCTTTACCACCCTCTCGTCACGTCAGGATCGGTAAATCAAGGCACT
ATTTGATCAAACCACAGATATCTATCATATTCTTTTACACACTAGATAGG
TTAACTGCTTACAGTGTCCAGTTTTGAAGTCAACTAGTCTACCATGTTGT
TTTTCATTTAATCTTAGATTTTGGAACGTTCGAATTTCAAAACATTCGAA
TCGCGCTGTTGACGACAAGAATTGAAAACAACACGGCGCTTTAGGCAACT
TTTAAATTGGAACACGCTTCCTTTTATATGGGAAGCCCGACCCAGTCACT
TAGTTAGACTAGTGGATTAAAACCATCATTTGTTAAACCTTGAAAATAAA
TGATGTATCCCTTAAGTATTTTATATAACTTTCTTTAACAACTTAAACAA
GCTCTGATATCACTGAGCACTTTCTGCAGATAGAAGAAAATAGACTTGTA
TTACTATTTTAATATTTGTATTTAAGGTGGAGTAACGAACTGCGGCGGTA
AGGTGGTCCAAAAGGTTTACCAGATCCAAGAAAATAGATATTCTTCACAT
ATCTCATTAACTTTATGTGGAAATCCAACACCTTCATTAAAATACACTTG
GGCTGAAGAGAGCAATGGTTTAGCGAGGATCAATCATGATTTTGAAGATG
CGAAGACAAGAAAATATCGATATAATATCGATTTGTATAACATTACTCGA
AAACATTGTGGAAGTGAGATCCATTTTAAAGCTTTCGGATTTAAAATATG
GATGGCTTCCTCCAGATTGATGGTCAAATGTGAGTATTCTGCATCACTGC
AATGTCTTCTGCATCACTGCAATGTCTTCTACATCACTGCAATGTCTTTT
GCATCACTACAATGTCTTTTGCATCACTGCAATGTCTTTTGCGTCACTGC
AATGTCTTCTGCATCACTGCAATGTCTTCTGCATCACTGCAATGTCTTCT
GCATCACTGCAATGTCTTCTGCATCACTGCAATGTCTTTTGCATCACCCA
ACGGCTGATTGGTTGCAAGTGACGTATTGACGGGTTTTACGTCACTTACA
ACCAATCAGCTGTTTGGTCCGTGATGTAATGTTAGAAGATATTGCAGTGA
TGCATATCATGAATTCATGATATGCGCATCACTGCAATGTCTTCTGCATC
ATCCAACAGATGATAGCTGATTAGTTGTAAGTGACGTAAAATAAGTCAAT
ACGTCACTTGCAGCCAATCAGCTGTTGGGTCTATGATGTAATGTTAGAAG
ACATTGCACTGGTGCATATTATGAATTTTAGTGTACGTAATGGTCGAAAC
TCTATCGCATAATTATTACTATTTTTTCGGATTCGATTCGTTCGATTGAT
AGAGAACAAAAACAGCAATCGAGCCCATAGAATCAGATAGAATTTCATTT
TTAAAGATTTCTAAAACTATTCGATTCAGTTTCGATTGCGATCGATTGCA
ATCAGTTTGGTTCGATTGATTCAAAATTGAAAGTTCTGCTTACATTCTTT
TATAAGAAAAACTTTATAAGAACAAGAAGGCTAAAAAAATGTCAAAGTAT
AAGAAAAAAGCAGAACCGTGAAAGGCTGAGTTATACCTTAAGAGATGTCA
GAAAGAAAAGACACTGACATCGCTCTACTTATTTATCGNACCTTAAGAGA
TGTCAGAAAGAAAAGACACTGACATCGCTCTACTTATGTATCAAGCACTG
TAAAAGACTGAAGGATTACTTACCTTAAGGGGTGTAATTTTTGCAATAAC
TGATTTTCGTGGAACTTACATTCGTGTTGCGAGGGCTGGAGATTTTTTGC
GCTTGACACCCACTTTTTGTCGAAATTCTTTCCTATGAGTTACAAGAATT
TATAGTAAAAATTGCATTTCACGGAACTAATTTTCACAGTACACACCCAA
AAACGCGAAAATTTGTTTCGCGAAAATAATTTCCGCGAAAAATAGGTGAG
CAAAATAAGGACCGAATAAATAAAAATGTGATATAAAATTCTAAAATACC
CCAATTTTGCCCTAGAAATAAGAACATGATTAAAGAACAATTTTAGGCTC
AAAATGCAAAAAAGAAAGAAGGGGTGGGCAAAGATTCTGAAGCCTTCGGA
TGTTCTTAACTTTTTTAGTTTTAAGGTCAAAAATTGTTCTTATTTTCACC
GTTTTCTGAGTATTTTTGCCCATTCTCCTAAGAAATAAGGTGTTTACGAG
TCCACATAGCCTTAAAATGTTCTTAACCTATTTCCTTAACATTTTGGCCA
TCGAATCCTTATGTTCTTATATAGTTTGTTCTTATTTTACTATTGGGAAT
TGAGATATTTATGAACTAGCTATACAAACTCTCATGCAAAGATTTCCTTC
GATTTTGTGAGTATTTTTGGGTATTAGTCCACAAAGTCTTAAAATGTTCT
TAACGTGTTTCCTTAAAATATTTTGNGATTTTTGGGTATTAGTCCACAAA
GCCTTAAAATGCTCTTAACGTATTTCCTTTAAATATTTTAGCCATCGAAT
CCTCATGTTCTTATAAAAACGTGTATTCACTAACCTTTAGATAAAGCATC
AAAAGTGACGAAAAATTTCACCATTGTCAAATTATCGACATTTTCCGGCA
CCTGTTGTACCATCTTCAAATTACCAGCACCTGAAACACAGTGTAAACAG
ACCTTTAGCATTTTCGCATACGATGTCAATAAAACCTTAATCATGACAAA
GCTGTATCATGAGGAGAATCAACTGACAAATTGTAATGACAAGGCCTTGT
TTACACGGATCAAATTTGCAAGGATACAAGCAGTTAGTTGGGATGGCCAG
CTTGGTGAGATGTCTCAATTCTTTCAAACAACAGACGAAAGACAAGGTAG
TTTTAAGACTTCGATAGATACACTGTTTTTTTATAAGAACATCCAAAATT
TTTGAAGCCGTCGGATGTTCTTAAGTTTTTGAGTATTAAGCCTTTAAATG
TTCTTAACATGTTTTTATTTTCTTCATTTTTGAGTATTTTTGTCAATTTT
CTTCAGAAATTGGGTGTTTTAGAGTTCGCGAAGCCCTAAAATGTTCTTAA
TTTGTTCTTGATATTTTGGTCATCAAAACCTTATGGTCTTATATAGTTTG
TTCTTATAAAATGGCGACCTCGTCAAATGCTTCAAATACTTCACTGGACT
CAGCATCATGAAAAATTATCAAAAAGCAAAAATCAGCAAGAAGTAGACTA
TAGTCTAATAAAACCATTGAGTAAGTTTACCGGCCGTCTTTGATCGGAGT
TTTTTTGAAAGGTACCCACAAAGAAGGCAATACAGTGCTACATCATAAGT
ATCAGAGCCCCCCCCCAGTTGTTTGCGTGAATGCATCGACCTCTAACGGG
AATGCGTGAATGGGCTTTTTCATTTGCGAAAATGCGTGAAAATTAAAAAA
AAGCTGCGTAAAGTCGTGAATTGGAAAATGTTGCGTGAACAGAAATAGTG
TGAATTTTGAAAATTGTGTGAAGGTGTGAAATTTGGAAAAGAAATTGCTC
GTCGAAGAGAAAATAGATCTAACGCTCTCTCCGATTAGGGGTTCCCCTTT
TGAAAAATAAATCGATCAAAGATCTTAGTTGGTTGGGATTGAGAATACCT
CCAGACCCCCAGTGTTTATCAACAATACAATGAATTTTTTTAATCTTGTT
TGCAGTGGCAGAACCATCAAAACCCAAAGAAACAAAGGCGACGAAGATCA
AAAAACCTCTATTTTCGCACACAGTTATAATAATCCTCGTTGCCATGGGA
GCATTACTTGTTGTCATAACTTTGACCGCCATTTTGGTTTCCAAAAATTG
TCACGGTAAGTTACGGCAGTTTTTGAGGAGCATATAAAAGCATTGGCGGT
CTGATTAGAAAACCAAACGCTACTTAAAACACAATGCTAATTTTTTTTCT
AAAGGTCCGGCTGTAATTTGCAGGTTTTTTAACTATTTCTATTTTCTAAA
TCTTCTAAATATGCTAACTGTGCTTATTGACTTATTTCGAGAAAACTTAA
CATGAGATTTTTTGTTTCTTTGAACGTGACCGTGATACAGTAGACGCTTG
CTAATTCGAACTAACTGCTACTCGAATCTTACTATAATAGACCTTTTCAT
AAATTACGTTACAAACATCACTTGCCTCGTTTTGAAATTATTGCCATGGT
GATTAACTCCTAGCGGATTTTATTAAAACTACTTCCTATTCATAAAAAAA
TCATTTAATGTCTCAAGAGACATAATCACTATAGTAATTGTTTGAATACG
AGGCAAGTGATGTTCGTGACGTAATTTATGAAAAGGTTTATTCGAATTTA
TTCTCAGTGTCCATCAAGAAGAAATCCTTGAATAACGGTTCTTATAACTC
GAGTCGCGATTCGAATTTTCCATTGTTCTCGAATAGATTGGACTACAGTC
GACTCTCATTAATTCGAACTCAAACAGGGAATCTTATTTGTTCGAATAAC
AGAGAGACTCGAGTTATAGAGAGTACTTTGTGAGGGTTTCTCCCTTACGG
GAACTGAGAATAAGTCCGAATTATAGAAAGATTTGAATNGGGTTTCTCCC
TGACGGGAACTGAGAATAAGTCCGAATTATAGAAATGATTTGAATAATAT
AGGTTCGATTCAGCGATTTGAAGCGAGTTTTTAAGCATGAGTGAGTAAGA
GAACCTTTATATGTCTAGGATTGAACTTTCCTTTATTGAATTACAAGCTG
CCAGCGAAAAAGTCATGAAAAAGTTTACCAATTCTTNTGTCTAGGATTGA
ACTTTCCTTTATTGAATTACAACCTGCTAGCGAAAAAGTTTACCAATTCT
TTCTTAATTTTTTTAGGAAAGAAAAATGCAAGAGAAAATGAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025134XLOC_025134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041127-exon-sc0002714-1575043694:17957..18264TCONS_00041127-exon-sc0002714-1575043694:17957..18264Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1575043694:13547..13589TCONS_00041127-exon-sc0002714-1575043694:13547..13589Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1575043694:9169..9474TCONS_00041127-exon-sc0002714-1575043694:9169..9474Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1575043694:8210..8359TCONS_00041127-exon-sc0002714-1575043694:8210..8359Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1575043694:7168..7198TCONS_00041127-exon-sc0002714-1575043694:7168..7198Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1510915933:17957..18264TCONS_00041127-exon-sc0002714-1510915933:17957..18264Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1510915933:13547..13589TCONS_00041127-exon-sc0002714-1510915933:13547..13589Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1510915933:9169..9474TCONS_00041127-exon-sc0002714-1510915933:9169..9474Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1510915933:8210..8359TCONS_00041127-exon-sc0002714-1510915933:8210..8359Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1510915933:7168..7198TCONS_00041127-exon-sc0002714-1510915933:7168..7198Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1491911889:17957..18264TCONS_00041127-exon-sc0002714-1491911889:17957..18264Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1491911889:13547..13589TCONS_00041127-exon-sc0002714-1491911889:13547..13589Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1491911889:9169..9474TCONS_00041127-exon-sc0002714-1491911889:9169..9474Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1491911889:8210..8359TCONS_00041127-exon-sc0002714-1491911889:8210..8359Clytia hemisphaericaexon
TCONS_00041127-exon-sc0002714-1491911889:7168..7198TCONS_00041127-exon-sc0002714-1491911889:7168..7198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002714supercontigsc0002714:7168..18264 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.109909	0.0505886	0	0	0.197286	6.81928e-09	0.0806848	0.0712073	0.0387267	0.0296795	0.049748	0.293358	1.29474	0	0.0611274	0.124453	0	0.66373	0	0.081801	0	0	0.0587954	0.557952	0	0	0	0.0313017	0.0318915
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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