TCONS_00041121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041121
Unique NameTCONS_00041121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041121 ID=TCONS_00041121|Name=TCONS_00041121|organism=Clytia hemisphaerica|type=transcript|length=433bp
GTTGGGAGTAGCATTGGTAGGTAAATACAGGGCTCTAGGTCCTGGTAAGG
ATACCCATTTAAAATGGGTATCCTTACCAGGGCATAGGGTTGGGGCTAAC
CCTGGTATGGTCAATATAAATaagtctgtaaattacacactaTAAGTAGA
TTGTGAATTCAAAATTTGTGgtctataataataataatattttaagtgGC
TGGCCATAGAATAATGAATCAGCTTTTAGGCAGCTGAGCCATTGTCTCCC
CCAGGGGCCACTTGTATAACATAACAGAACAATAATTGGAACGATAACTG
ATTaagataataaataataaatttctaattgaaaatatgagttttgagtt
tgtttttaaacGATAAAAGAGATTGGCATTGTTTCATCTCTAAAGGTAGA
TTGTTCCACAGATGCATGGTTGAGGCAATGAAC
Run BLAST on NCBI

transcript from alignment at sc0002712:18001..18433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041121 ID=TCONS_00041121|Name=TCONS_00041121|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0002712:18001..18433 (Clytia hemisphaerica)
GTTCATTGCCTCAACCATGCATCTGTGGAACAATCTACCTTTAGAGATGA
AACAATGCCAATCTCTTTTATCgtttaaaaacaaactcaaaactcatatt
ttcaattagaaatttattatttattatcttAATCAGTTATCGTTCCAATT
ATTGTTCTGTTATGTTATACAAGTGGCCCCTGGGGGAGACAATGGCTCAG
CTGCCTAAAAGCTGATTCATTATTCTATGGCCAGCcacttaaaatattat
tattattatagacCACAAATTTTGAATTCACAATCTACTTAtagtgtgta
atttacagacttATTTATATTGACCATACCAGGGTTAGCCCCAACCCTAT
GCCCTGGTAAGGATACCCATTTTAAATGGGTATCCTTACCAGGACCTAGA
GCCCTGTATTTACCTACCAATGCTACTCCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025130XLOC_025130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041121-exon-sc0002712-1491911889:18001..18433TCONS_00041121-exon-sc0002712-1491911889:18001..18433Clytia hemisphaericaexon
TCONS_00041121-exon-sc0002712-1510915933:18001..18433TCONS_00041121-exon-sc0002712-1510915933:18001..18433Clytia hemisphaericaexon
TCONS_00041121-exon-sc0002712-1575043694:18001..18433TCONS_00041121-exon-sc0002712-1575043694:18001..18433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002712supercontigsc0002712:18001..18433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17537	1.08114	1.75655	0.866018	0.213588	0.33756	0.407252	1.89481	0.133466	0.767443	1.2837	0.484431	1.50703	0.9042	0.641035	0.810803	0	0.844855	0.978991	0.790983	0.4594	0.971867	0.544796	0.660398	1.44322	1.49166	0.953361	0.695323	0.175793	0.651705
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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