TCONS_00041116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041116
Unique NameTCONS_00041116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041116 ID=TCONS_00041116|Name=TCONS_00041116|organism=Clytia hemisphaerica|type=transcript|length=957bp
AGTTTTTGGATGGGTGTAGCTCAAGAAAGAGAATCCAATAAAACATGCAT
ACCCTGCTTCCCTCACTCAGGAAAGAacaatataaaatgaaaaatatttt
ttgatattcattcttttttaacaGGTTCAACCCCAACAAGAGCTAAAATG
CAcaaagaattcaaaattgaCAATTCACTCAGACTACATCGCAAGTCAAA
CATGGCTCTTCCAACCATAGTACCAActgaatcaaaatttgaaagctGAT
GAAAATTCTTCCCCATTTAACAAGTGAAGAAAGTCAATGGAGTTTCGTGA
CAGCAACAAATTCGGTTGACTCAACTAAAATTTGCGATGTTGTTTTCACA
TTTCTTTTGCAATATGAATCTCCAGTCTCAAACACGTTCCCCGTGTCTAT
ATTAGATGGTGACAGCTTATTGTATAATGTGTTCCAAACAGTTGTTATTC
CTGGTTATTTATGTCAAATGAGTGCAACTGTAATCTGCTTTTGAACTGGA
ACCTCTTATACATTCAATTGGACATTGCATGTACCAACAATCAAAGGACG
TTCATGACAGCGACAAATTCGGTTAACTCAACTCAAATTTGCGATGTTGT
TTTCACATTTCTTTTGCAATATGAATCTTCATTCTCAAACACGTTCCCCG
TGTCTATATTAGATGGTGACAGCTTCTTGTATAATGTGTACCAAACAGTT
GTTATTCCTGGTTATTCATGTCAAATGAGTGCAACTGTAATCTGCTTTTG
AACTGGAACCTCTTATACATTCAAAGGGACATTGCATGTATCAAAAATCA
ATTAACGAACAATCatgtaaaagtaatttttttattctacGAAATGTGTT
AAAGTAGACAAATTATTTACAATTTATGAATTTAGAATTTATATCAATta
tttactttcattttatactatattaattttatcaaaaattttgaaggatA
ACCTTTC
Run BLAST on NCBI

transcript from alignment at sc0002711:12983..14559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041116 ID=TCONS_00041116|Name=TCONS_00041116|organism=Clytia hemisphaerica|type=transcript|length=1577bp|location=Sequence derived from alignment at sc0002711:12983..14559+ (Clytia hemisphaerica)
AGTTTTTGGATGGGTGTAGCTCAAGAAAGAGAATCCAATAAAACATGCAT
ACCCTGCTTCCCTCACTCAGGAAAGAacaatataaaatgaaaaatatttt
ttgatattcattcttttttaacaGGTTCAACCCCAACAAGAGCTAAAATG
CAcaaagaattcaaaattgaCAATTCACTCAGACTACATCGCAAGTCAAG
TAAGTACCGAATGTCTGTTAAACTATTCAGATGTTGAAAGATGCCTGTTA
AACAGATGCCAAActgtaaaaatcacaaatctttGGTCTGTATAGCTCAG
TACACTGAAGGCTGTGAACAAGAATTTGTAGCCTTctgcaaatttttaaa
aaagtcaTTGCTTGTGATTTAAATGGAGTTTGTGGTAACAATTCAGTAAT
AAGaaattctaatattttttaGACATGGCTCTTCCAACCATAGTACCAAc
tgaatcaaaatttgaaagctGATGAAAATTCTTCCCCATTTAACAAGTAA
GTGTTATTTTTCAATGCGAAGATATTTGGGCGGATGAACAGGTCAACAAT
ATCATGATATATTCCAGTATACTATTCTTTAGGGAAGCCATTTCAAGTTC
TgagggtttgaaatttttgttgaagGACTCCCTAGGGCACTCAGGCAAGA
TGGGGATGTGTCGCTTACCAGAGTCCCTTTTATAAGTAAAGAAATACTTG
GGATATTTTAAAATTcactaaatttttgaaaaaagctaaaaattgtTTAG
GATCCATTTTCGAACACCAGTGACACGTCAGTGACAGTACCCCTCCCCAG
GGAAATTCAAACATTAAATGTATACAATAATGGACAACGCTTCAAAACCT
TACTGAATTTCTATGACATCATTAtttatcattaatttttaagGTGAAGA
AAGTCAATGGAGTTTCGTGACAGCAACAAATTCGGTTGACTCAACTAAAA
TTTGCGATGTTGTTTTCACATTTCTTTTGCAATATGAATCTCCAGTCTCA
AACACGTTCCCCGTGTCTATATTAGATGGTGACAGCTTATTGTATAATGT
GTTCCAAACAGTTGTTATTCCTGGTTATTTATGTCAAATGAGTGCAACTG
TAATCTGCTTTTGAACTGGAACCTCTTATACATTCAATTGGACATTGCAT
GTACCAACAATCAAAGGACGTTCATGACAGCGACAAATTCGGTTAACTCA
ACTCAAATTTGCGATGTTGTTTTCACATTTCTTTTGCAATATGAATCTTC
ATTCTCAAACACGTTCCCCGTGTCTATATTAGATGGTGACAGCTTCTTGT
ATAATGTGTACCAAACAGTTGTTATTCCTGGTTATTCATGTCAAATGAGT
GCAACTGTAATCTGCTTTTGAACTGGAACCTCTTATACATTCAAAGGGAC
ATTGCATGTATCAAAAATCAATTAACGAACAATCatgtaaaagtaatttt
tttattctacGAAATGTGTTAAAGTAGACAAATTATTTACAATTTATGAA
TTTAGAATTTATATCAATtatttactttcattttatactatattaatttt
atcaaaaattttgaaggatAACCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025125XLOC_025125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041116-exon-sc0002711-1491911889:12983..13181TCONS_00041116-exon-sc0002711-1491911889:12983..13181Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1510915933:12983..13181TCONS_00041116-exon-sc0002711-1510915933:12983..13181Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1575043694:12983..13181TCONS_00041116-exon-sc0002711-1575043694:12983..13181Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1491911889:13405..13478TCONS_00041116-exon-sc0002711-1491911889:13405..13478Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1510915933:13405..13478TCONS_00041116-exon-sc0002711-1510915933:13405..13478Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1575043694:13405..13478TCONS_00041116-exon-sc0002711-1575043694:13405..13478Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1491911889:13876..14559TCONS_00041116-exon-sc0002711-1491911889:13876..14559Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1510915933:13876..14559TCONS_00041116-exon-sc0002711-1510915933:13876..14559Clytia hemisphaericaexon
TCONS_00041116-exon-sc0002711-1575043694:13876..14559TCONS_00041116-exon-sc0002711-1575043694:13876..14559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002711supercontigsc0002711:12983..14559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.832063	0.524778	0.293107	0.190043	2.33122	1.74147	0.51707	0.266136	0.354026	0.664399	0.508584	0.452726	0.565572	0.385033	0.586591	0.538652	0.559369	0.39244	0.809065	0.641889	2.49128	2.44083	1.31308	1.81381	0.0688484	0.0516533	5.4714	5.69848	4.42443	5.58576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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