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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041112 ID=TCONS_00041112|Name=TCONS_00041112|organism=Clytia hemisphaerica|type=transcript|length=503bp
CAACAGGTCATCAACGCCACAAGAGGAAGACATCACACCTTGGCATTGGC
CGAAAGAAGTTTCCTTAGAAGGTGGTCGTCTCGATGTCGAACCaaccaaa
aaacaacaaatcacaCAACAGTTCAAAACTTCACTAGCAAGAAATATGAC
TGTTTTGGATGTGGAAGAAATCTGTAATGCAGAGTTTTATCAAAAGTACC
AAAGcaAAAAGAAAATACTCGCAAAGAAGCTGGGCGAAAACAATGTCAAT
GAACTCGAGCTGTATCATGGGACTGATGCCGCAGTGGTTGATGGGATATG
TAAACAGAATTTTGATTGGAGATTGAACGGTAAAAACGCAACGATGTTCG
GCCAAGGAAGTTATTTCGCCACACAAGCTTCTTACAGTCGCAACTTCACG
CGACCGGATTCcaataaaatcaaatatatGTTCGTAGCAAAGGTTCTGGC
AGGAAGATATACAAAGGGAAGTTCTGACATCAAACGACCACCACCAATAT
CAC Run BLAST on NCBI protein sequence of TCONS_00041112-protein >TCONS_00041112-protein ID=TCONS_00041112-protein|Name=TCONS_00041112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
NRSSTPQEEDITPWHWPKEVSLEGGRLDVEPTKKQQITQQFKTSLARNMT
VLDVEEICNAEFYQKYQSKKKILAKKLGENNVNELELYHGTDAAVVDGIC
KQNFDWRLNGKNATMFGQGSYFATQASYSRNFTRPDSNKIKYMFVAKVLA
GRYTKGSSDIKRPPPIS Run BLAST on NCBI transcript from alignment at sc0002709:14570..16326- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041112 ID=TCONS_00041112|Name=TCONS_00041112|organism=Clytia hemisphaerica|type=transcript|length=1757bp|location=Sequence derived from alignment at sc0002709:14570..16326- (Clytia hemisphaerica)
CAACAGGTCATCAACGCCACAAGAGGAAGACATCACACCTTGGCATTGGC
CGAAAGAAGTTTCCTTAGAAGGTGGTCGTCTCGATGTCGAACCAACCAAA
AAACAACAAATCACACAACAGTTCAAAACTTCACTAGCAAGAAATATGAC
TGTTTTGGATGTGGAAGAAATCTGTAATGCAGAGTTTTATCAAAAGTACC
AAAGGTATATACTTATTGTGAGTACAGTTGAAGTTTGGACAAAATTTCCA
ACGCCTGAAAGTTTTTTTCAAAAAACTTTTACCTACGGAAAATGAAAATA
GAAGTTTTCTGGGAGGGAGCATATTCAATGCTTCATAAATCACCAGAATT
AGCCGATCTCGTATGAGGATTAAGTAGTCTCTTAGACCTCATTTCGAGTC
TTTTCCAATCCTCGCATCGATGGGCTTCTTTCTGGGGCTCAGCATTGTAT
CCTTATAGGATCTTCTTTACGAAGTTTCAGCCTGTTGAGAAATTTGTCCA
TATAAACGACTATGTATATCTTCTTTATATATTTTTTTCTCAGCAAAAAG
AAAATACTCGCAAAGAAGCTGGGCGAAAACAATGTCAATGAACTCGAGCT
GTATCATGGGACTGATGCCGCAGTGGTTGATGGGATATGTAAACAGAATT
TTGATTGGAGATTGAACGGTAAAAACGCAACGATGTTCGGCCAAGGAAGT
TATTTCGCCACACAAGCTTCTTACAGTCGCAACTTCACGCGACCGGATTC
CAATAAAATCAAATATATGTTCGTAGCAAAGGTTCTGGCAGGAAGATATA
CAAAGGTATAGAAAAATATATATTTTTTTACTTTACTGACTTCAGTTTGT
TTCAATGATATTTATTTCTCCAGTCAGGTATCGGGCACAGATATTTGTCG
TAACGTTTCTTGAATGCATCTTATGAGCAGCCAGTTGAGCCCTGTACGGC
TAGACTTTCACAAATAAACTTGCCAAATCTAATTCTGTAAATTCTTCGGA
GCTGGCATTTTCGGCCATGATCGTAAAAACGATTAAATTACCGGTATTAT
TTTTCAGAATCATGTACTTGAGAAAAACAAATTAAAATAGAAAATAAAAT
TTGGCTGATGACGTGGAAAAAGGAACACCCATAGATTTTAAAGCCCGAAG
GGCTAGATGTCGTGCTTCGGCTGAAAACTGTGCCGAGGTTAGGAAGGGAA
TCCTACCTAAGTCATGTGACATTATAACAGAATTTCAGTGCTTGACCAAT
AAAAAACTTCGCGTGTTTGCGAAAACTATAGCAGCAAAATTCTTTGCGAT
ATTCACTTTTTTTTGCTTGGAAGAGCTCAAAGCACGACATCTAGCCCTTC
GGGCTTTATAAATCTATGGTAACACCGTGATCATTTCGCAGTGGGACAGA
AGAGGGGAAAGGGAGGTGGGGTGAAGGTAGAGGCTAGTTATAAGCGGTTA
ATGATGGTATTCCATTCGTAGAGTATTCCCAGCTCAAGTTTAAAGTTTAA
GTTTAAAGTCTTTTTTTATTACACTTAGCCATGTTGTTGTTGGTTTCCCT
CCGGGCATCTGATACTCTGAGGTGGCGTAAACTTTCATTCATTTTAAGCT
TTCTTCATTGGGGTATCATTTTTCGCAGTTGTAACCATTGACTTCAAAGC
CCGAATGGCTAGACTCGAGACTCCTGGATGGGAAATGAAGCCACTTATTT
CCAATGTTTTTCATTTGTAGGGAAGTTCTGACATCAAACGACCACCACCA
ATATCAC Coding sequence (CDS) from alignment at sc0002709:14570..16326- >TCONS_00041112 ID=TCONS_00041112|Name=TCONS_00041112|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0002709:14570..16326- (Clytia hemisphaerica)
GGAAGTTCTGACATCAAACGACCACCACCAATATCACAAAAAGAAAATAC
TCGCAAAGAAGCTGGGCGAAAACAATGTCAATGAACTCGAGCTGTATCAT
GGGACTGATGCCGCAGTGGTTGATGGGATATGTAAACAGAATTTTGATTG
GAGATTGAACGGTAAAAACGCAACGATGTTCGGCCAAGGAAGTTATTTCG
CCACACAAGCTTCTTACAGTCGCAACTTCACGCGACCGGATTCCAATAAA
ATCAAATATATGTTCGTAGCAAAGGTTCTGGCAGGAAGATATACAAAGAA
CAGGTCATCAACGCCACAAGAGGAAGACATCACACCTTGGCATTGGCCGA
AAGAAGTTTCCTTAGAAGGTGGTCGTCTCGATGTCGAACCAACCAAAAAA
CAACAAATCACACAACAGTTCAAAACTTCACTAGCAAGAAATATGACTGT
TTTGGATGTGGAAGAAATCTGTAATGCAGAGTTTTATCAAAAGTACCAAA
GGGAAGTTCTGACATCAAACGACCACCACCAATATCACAAAAAGAAAATA
CTCGCAAAGAAGCTGGGCGAAAACAATGTCAATGAACTCGAGCTGTATCA
TGGGACTGATGCCGCAGTGGTTGATGGGATATGTAAACAGAATTTTGATT
GGAGATTGAACGGTAAAAACGCAACGATGTTCGGCCAAGGAAGTTATTTC
GCCACACAAGCTTCTTACAGTCGCAACTTCACGCGACCGGATTCCAATAA
AATCAAATATATGTTCGTAGCAAAGGTTCTGGCAGGAAGATATACAAAGA
ACAGGTCATCAACGCCACAAGAGGAAGACATCACACCTTGGCATTGGCCG
AAAGAAGTTTCCTTAGAAGGTGGTCGTCTCGATGTCGAACCAACCAAAAA
ACAACAAATCACACAACAGTTCAAAACTTCACTAGCAAGAAATATGACTG
TTTTGGATGTGGAAGAAATCTGTAATGCAGAGTTTTATCAAAAGTACCAA
AGGGAAGTTCTGACATCAAACGACCACCACCAATATCACAAAAAGAAAAT
ACTCGCAAAGAAGCTGGGCGAAAACAATGTCAATGAACTCGAGCTGTATC
ATGGGACTGATGCCGCAGTGGTTGATGGGATATGTAAACAGAATTTTGAT
TGGAGATTGAACGGTAAAAACGCAACGATGTTCGGCCAAGGAAGTTATTT
CGCCACACAAGCTTCTTACAGTCGCAACTTCACGCGACCGGATTCCAATA
AAATCAAATATATGTTCGTAGCAAAGGTTCTGGCAGGAAGATATACAAAG
AACAGGTCATCAACGCCACAAGAGGAAGACATCACACCTTGGCATTGGCC
GAAAGAAGTTTCCTTAGAAGGTGGTCGTCTCGATGTCGAACCAACCAAAA
AACAACAAATCACACAACAGTTCAAAACTTCACTAGCAAGAAATATGACT
GTTTTGGATGTGGAAGAAATCTGTAATGCAGAGTTTTATCAAAAGTACCA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041112-exon-sc0002709-1575043694:16123..16326 | TCONS_00041112-exon-sc0002709-1575043694:16123..16326 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1575043694:15522..15783 | TCONS_00041112-exon-sc0002709-1575043694:15522..15783 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1575043694:14570..14606 | TCONS_00041112-exon-sc0002709-1575043694:14570..14606 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1510915933:16123..16326 | TCONS_00041112-exon-sc0002709-1510915933:16123..16326 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1510915933:15522..15783 | TCONS_00041112-exon-sc0002709-1510915933:15522..15783 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1510915933:14570..14606 | TCONS_00041112-exon-sc0002709-1510915933:14570..14606 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1491911889:16123..16326 | TCONS_00041112-exon-sc0002709-1491911889:16123..16326 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1491911889:15522..15783 | TCONS_00041112-exon-sc0002709-1491911889:15522..15783 | Clytia hemisphaerica | exon |
| TCONS_00041112-exon-sc0002709-1491911889:14570..14606 | TCONS_00041112-exon-sc0002709-1491911889:14570..14606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002709 | supercontig | sc0002709:14570..16326 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012317 | Poly(ADP-ribose)pol_cat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003950 | NAD+ ADP-ribosyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003950 |
NAD+ ADP-ribosyltransferase activity |
Blast
BLAST of TCONS_00041112 vs. Swiss-Prot (Human)
Match: PARPT (TCDD-inducible poly [ADP-ribose] polymerase OS=Homo sapiens GN=TIPARP PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.156e-35 Identity = 60/119 (50.42%), Postives = 85/119 (71.43%), Query Frame = 2
Query: 152 VLDVEEICNAEFYQKYQSKKKILAKKL--GENNVNELELYHGTDAAVVDGICKQNFDWRLNGKNATMFGQGSYFATQASYSRNFTRPDSNKIKYMFVAKVLAGRYTKGSSDIKRPPPIS 502
+L + + N ++KY+ KK+ + +K+ + +NE L+HGT VVDGICK NFD R+ GK+ATMFGQGSYFA +ASYS NF++ S + +MF+AKVL GRYT GS ++RPPP++
Sbjct: 492 ILQILRVQNQFLWEKYKRKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGICKHNFDPRVCGKHATMFGQGSYFAKKASYSHNFSKKSSKGVHFMFLAKVLTGRYTMGSHGMRRPPPVN 610
The following BLAST results are available for this feature:
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