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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041110 ID=TCONS_00041110|Name=TCONS_00041110|organism=Clytia hemisphaerica|type=transcript|length=1027bp
CCtctctttttttcatatttgtttGGTTGGATTACACGACTATAGCAAAA
TATGAACAACTCAACTGGACCACAAATCAGCTCAGTTTCCAAGGACACTG
AGACTGTTTTTCTGGTCCTTTTAGTAATCTTTTGTATGATTTTATGTCTT
CATCTTGCCGTTCAGTGGAGCATCTACAAAATTCGCTTACACACGAGCAA
TAATTATTATCTGATTCGCGCTTTGTCCTTGGCTGATTCTTTGGCTATTG
TCTTATtaattttctttggattactGAAAGCTCTAGACTTGAGTTTGGGA
GCTACTGCATTAAATGTTATTTTATTCTCCTTTTTAAACACTTCTTACTC
TATGTCCTTGGTAATAACAATGTTGATCGTGACAGATCGTTGGATAGCAA
TGCAGTTTGCTCTAAGATACCACGCACTTGTCACCAAAGGAAAGATCAAT
ATTGCAATCCTCGTTTCAAGCATTACAGCCTTTGTTGTGGACATTACATT
ATCGTTCTCTGTTGCATCAGGCGACCAACAGCGGAGAATGGTGCCCAGCA
ACAATTATATTATGACTCTTTTCTGTCTTTTGAGAACAATAACTTGCGTT
TATATCATAATTTTCGCTAAACGGACACTCAGGGTTCGAagtcaaaacga
ggctagaaTCCAGAACATCACAAACTTTCATGGCGCAGAAGCCGAGCGTC
TAGTTATCATGAAAAGACTTACAAGGAGTATCAAAGATGTTTGGGCATTA
AACATTGGAACGTCTGTCTTCCTTTTACCAACGATAGTCGTTACCTTATT
CTTCGATGTGAGTTTTCCTCAAATGATGAACTTTTCTGAAAGACTACTAG
TATTTGCTGTGGCAAATGGAATTTATCTCATCTCAAATCCGATTGTGTAT
TTGCTCTGTTTCACCAAAATACGACAATACTGGTACCGCACGCTCATATC
ACGAAACAACGTCGTTAATAACGaaacaaattaaaaactttttctctcaA
TTCATCGtatacgacaatttaaaaaat Run BLAST on NCBI protein sequence of TCONS_00041110-protein >TCONS_00041110-protein ID=TCONS_00041110-protein|Name=TCONS_00041110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MNNSTGPQISSVSKDTETVFLVLLVIFCMILCLHLAVQWSIYKIRLHTSN
NYYLIRALSLADSLAIVLLIFFGLLKALDLSLGATALNVILFSFLNTSYS
MSLVITMLIVTDRWIAMQFALRYHALVTKGKINIAILVSSITAFVVDITL
SFSVASGDQQRRMVPSNNYIMTLFCLLRTITCVYIIIFAKRTLRVRSQNE
ARIQNITNFHGAEAERLVIMKRLTRSIKDVWALNIGTSVFLLPTIVVTLF
FDVSFPQMMNFSERLLVFAVANGIYLISNPIVYLLCFTKIRQYWYRTLIS
RNNVVNNETN Run BLAST on NCBI transcript from alignment at sc0002707:12312..13338 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041110 ID=TCONS_00041110|Name=TCONS_00041110|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at sc0002707:12312..13338 (Clytia hemisphaerica)
attttttaaattgtcgtataCGATGAATtgagagaaaaagtttttaattt
gtttCGTTATTAACGACGTTGTTTCGTGATATGAGCGTGCGGTACCAGTA
TTGTCGTATTTTGGTGAAACAGAGCAAATACACAATCGGATTTGAGATGA
GATAAATTCCATTTGCCACAGCAAATACTAGTAGTCTTTCAGAAAAGTTC
ATCATTTGAGGAAAACTCACATCGAAGAATAAGGTAACGACTATCGTTGG
TAAAAGGAAGACAGACGTTCCAATGTTTAATGCCCAAACATCTTTGATAC
TCCTTGTAAGTCTTTTCATGATAACTAGACGCTCGGCTTCTGCGCCATGA
AAGTTTGTGATGTTCTGGAttctagcctcgttttgactTCGAACCCTGAG
TGTCCGTTTAGCGAAAATTATGATATAAACGCAAGTTATTGTTCTCAAAA
GACAGAAAAGAGTCATAATATAATTGTTGCTGGGCACCATTCTCCGCTGT
TGGTCGCCTGATGCAACAGAGAACGATAATGTAATGTCCACAACAAAGGC
TGTAATGCTTGAAACGAGGATTGCAATATTGATCTTTCCTTTGGTGACAA
GTGCGTGGTATCTTAGAGCAAACTGCATTGCTATCCAACGATCTGTCACG
ATCAACATTGTTATTACCAAGGACATAGAGTAAGAAGTGTTTAAAAAGGA
GAATAAAATAACATTTAATGCAGTAGCTCCCAAACTCAAGTCTAGAGCTT
TCagtaatccaaagaaaattaATAAGACAATAGCCAAAGAATCAGCCAAG
GACAAAGCGCGAATCAGATAATAATTATTGCTCGTGTGTAAGCGAATTTT
GTAGATGCTCCACTGAACGGCAAGATGAAGACATAAAATCATACAAAAGA
TTACTAAAAGGACCAGAAAAACAGTCTCAGTGTCCTTGGAAACTGAGCTG
ATTTGTGGTCCAGTTGAGTTGTTCATATTTTGCTATAGTCGTGTAATCCA
ACCaaacaaatatgaaaaaaagagaGG Coding sequence (CDS) from alignment at sc0002707:12312..13338 >TCONS_00041110 ID=TCONS_00041110|Name=TCONS_00041110|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at sc0002707:12312..13338 (Clytia hemisphaerica)
ttaatttgtttCGTTATTAACGACGTTGTTTCGTGATATGAGCGTGCGGT
ACCAGTATTGTCGTATTTTGGTGAAACAGAGCAAATACACAATCGGATTT
GAGATGAGATAAATTCCATTTGCCACAGCAAATACTAGTAGTCTTTCAGA
AAAGTTCATCATTTGAGGAAAACTCACATCGAAGAATAAGGTAACGACTA
TCGTTGGTAAAAGGAAGACAGACGTTCCAATGTTTAATGCCCAAACATCT
TTGATACTCCTTGTAAGTCTTTTCATGATAACTAGACGCTCGGCTTCTGC
GCCATGAAAGTTTGTGATGTTCTGGAttctagcctcgttttgactTCGAA
CCCTGAGTGTCCGTTTAGCGAAAATTATGATATAAACGCAAGTTATTGTT
CTCAAAAGACAGAAAAGAGTCATAATATAATTGTTGCTGGGCACCATTCT
CCGCTGTTGGTCGCCTGATGCAACAGAGAACGATAATGTAATGTCCACAA
CAAAGGCTGTAATGCTTGAAACGAGGATTGCAATATTGATCTTTCCTTTG
GTGACAAGTGCGTGGTATCTTAGAGCAAACTGCATTGCTATCCAACGATC
TGTCACGATCAACATTGTTATTACCAAGGACATAGAGTAAGAAGTGTTTA
AAAAGGAGAATAAAATAACATTTAATGCAGTAGCTCCCAAACTCAAGTCT
AGAGCTTTCagtaatccaaagaaaattaATAAGACAATAGCCAAAGAATC
AGCCAAGGACAAAGCGCGAATCAGATAATAATTATTGCTCGTGTGTAAGC
GAATTTTGTAGATGCTCCACTGAACGGCAAGATGAAGACATAAAATCATA
CAAAAGATTACTAAAAGGACCAGAAAAACAGTCTCAGTGTCCTTGGAAAC
TGAGCTGATTTGTGGTCCAGTTGAGTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041110-exon-sc0002707-1491911889:12312..13338 | TCONS_00041110-exon-sc0002707-1491911889:12312..13338 | Clytia hemisphaerica | exon |
| TCONS_00041110-exon-sc0002707-1510915933:12312..13338 | TCONS_00041110-exon-sc0002707-1510915933:12312..13338 | Clytia hemisphaerica | exon |
| TCONS_00041110-exon-sc0002707-1575043694:12312..13338 | TCONS_00041110-exon-sc0002707-1575043694:12312..13338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002707 | supercontig | sc0002707:12312..13338 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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