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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041104 ID=TCONS_00041104|Name=TCONS_00041104|organism=Clytia hemisphaerica|type=transcript|length=2536bp
GTGTTGCATTAATCTAGTGTAAACAGGACTATTGGAAGGTTCTTGTATAc
aacctttttttataaaaaccagaaaacttttgttgaggctcggctgNGTC
TGCAATCGCATTACATTTCATCCAAATGTGTTGCATTAATCTAGTGTAAA
CAGGACTATTGGAAGGTTCTTGTATAcaacctttttttataaaaaccaga
aaacttttgttgaggctcggctgcttattttttggcacttcgagCCTAAA
CTTGTAAAATGCCTATTCTCCTATGGCAAATTGAGTTATTTTAGGATCAG
TACCCTTTTTAATAATTCGACCCTTATCtgcttaaagggacattacagta
gcaaaatgtaaacattgcgcgaaccacgtgtcattaaagagaacaattaa
aatcacgtgtccaaaacaaacttgtaaaacaatcgAACAATCANNNNNta
ttttgacatgtgacatttgttttgattttgtatctgctgcatacagtttg
tttacaaatttcgcaagtactgttatgtccctttaagccaACAGGCATGC
TATTAGCGACAAAAAGAAACTCTGAAGGCAACAGATCCGAAATCTGCTTG
ACCATTTCATGTCGCAAAACATCCAAATTCCCATAGAAAACATCTTCTTT
CACGATCACAAAACCAACTTGTTTTCCATCGAGGTTAAATTTTAACACGA
AAGTCATACTATATCGCAGATAAATctatgaaaaaatctttaatattATA
ATCCCCTGGTATTATTACCCTCAATAACTTTTAGTGTGATTTTTTCTTAG
GTATCTTTATGACGAAAAGGGACGGTTTTCTGAAGTTAGTCCGCACATAC
CCGATATTCTTCAACCCTAGTATCCCCGGGTTTCTCTACCACCATTTctc
ctttttttcatttatttcattCATTATTTTAATAGAGCTGTTgcactcat
aatttttttaataaaaaagactTGAATCTAGATCTAGAAATTTTTAAGAC
GAACCAGAAATAGGTCTGTCGGTTAACAAAGAAATAAAACTCCGGTCATC
ATACGTTAAGTCTTAACACACAGTACAAAGTATCTACGGGAATCGGTGGG
GGCGAGatgaccaaaattttaaaaaaaagttggcaATGAAAAGCAGAAAA
TAACCAATTTAATAACTCGCCTCACACAACtttctttattcaaaaactTA
TTACACTTTGTTGTATGTTAGTTGGAAAACTGACGAAGTTGCCAAATTTA
ATATCGGACATTTTTGCCGTCGGAATAGCAAGAGTCGAACTCCAAAAACT
TCCTCTTCGAGTATCGACCCCGCACTCGAGGTACTCGATGTAAATTTTAT
AAAACTGTCCCGGTTAGAATGTATCAAATACTCCGCATTTCGCCACTCCC
CCGGAATTTTAGTTACAAGAAATCAATCTAAAAATGAAACCAAAATACTA
TAGCCTCCTAAACTTTCTTTTAAGTAAATTTTATTGGACATCACTGCACT
GAAAATTATCTTCAGGTTTCAAACAAGCCATACCAAGAGCATCCACGCCA
TTCCATCTGCTCAGATCAAGAGCCAATAAGAAAGTGAATTTGACTTTGAG
TTGAGAAATCTTTAATGAAAATACGggcttttgtttttttcatatttgta
aaagaaaaacatttcagAGGAGGTCAGCGCCGCCCAATATACAGTGCTAA
TGGCAGAACTGGTGGTACTATTGCTGAAATAGTTACAATAATTACAATag
atttttttgagaaatttttttcttgtcaaaatatttatataGACACAAAA
ATGTACGGAAGTACTATAAAAAAAGGAGTGTCGGTACCTTTGATCTCAAA
AAGAGAtttaaagaaatgaaataaaaatgaatgtttaaaTATAAGAGAAA
CCAATATTTTTCCTTACTTTCTATTGTTTGAATACTCTATTGACTGGAAG
GGAATTAAATAGAAATTTTTCATTGTAAATGTCTTCTCTTCAGTCTCTTG
CTCAATAAACAAACAATGGAACACATTTATAATACActcttctttttata
agaaccagtaaatttttgctgaggctcggctgttcttattttttggcact
tttagcctcaaattgttcttatcctgttcttatttttagagcAAACTTGG
GCTATTTTTGGCTTTACACCCTATTTTTACATATCTGACCCTTAATTTGC
TTGAAATTCAGCCATTCCAGGCTAagggttgttcttaaattgttatcatt
ttttggcaattttgagcctcattgttcttataaaaaaaaaagagtgtata
gTAATAGTTTTTGAAATCGATTTAATATTGACAAGTGTATGATGGCCTTT
ATGTAGTCTTTCTTTTAAGAGAACAAAATTAACTTCTAAGCTTTCTTATC
CCTTTTGAATCTCTGCTTCTCAGCCTTAAAATATGAAAACGTTTGGGTGA
GACTTTTATCCATCGGCTCATTTTTTGggacttgaaaataaaataataaa
tcacGATTTCGCGAACTTTTGCCATTTTCCCGAAAT Run BLAST on NCBI transcript from alignment at sc0002704:9930..12465 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041104 ID=TCONS_00041104|Name=TCONS_00041104|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0002704:9930..12465 (Clytia hemisphaerica)
ATTTCGGGAAAATGGCAAAAGTTCGCGAAATCgtgatttattattttatt
ttcaagtccCAAAAAATGAGCCGATGGATAAAAGTCTCACCCAAACGTTT
TCATATTTTAAGGCTGAGAAGCAGAGATTCAAAAGGGATAAGAAAGCTTA
GAAGTTAATTTTGTTCTCTTAAAAGAAAGACTACATAAAGGCCATCATAC
ACTTGTCAATATTAAATCGATTTCAAAAACTATTActatacactcttttt
tttttataagaacaatgaggctcaaaattgccaaaaaatgataacaattt
aagaacaaccctTAGCCTGGAATGGCTGAATTTCAAGCAAATTAAGGGTC
AGATATGTAAAAATAGGGTGTAAAGCCAAAAATAGCCCAAGTTTgctcta
aaaataagaacaggataagaacaatttgaggctaaaagtgccaaaaaata
agaacagccgagcctcagcaaaaatttactggttcttataaaaagaagag
TGTATTATAAATGTGTTCCATTGTTTGTTTATTGAGCAAGAGACTGAAGA
GAAGACATTTACAATGAAAAATTTCTATTTAATTCCCTTCCAGTCAATAG
AGTATTCAAACAATAGAAAGTAAGGAAAAATATTGGTTTCTCTTATAttt
aaacattcatttttatttcatttctttaaaTCTCTTTTTGAGATCAAAGG
TACCGACACTCCTTTTTTTATAGTACTTCCGTACATTTTTGTGTCtatat
aaatattttgacaagaaaaaaatttctcaaaaaaatctATTGTAATTATT
GTAACTATTTCAGCAATAGTACCACCAGTTCTGCCATTAGCACTGTATAT
TGGGCGGCGCTGACCTCCTctgaaatgtttttcttttacaaatatgaaaa
aaacaaaagccCGTATTTTCATTAAAGATTTCTCAACTCAAAGTCAAATT
CACTTTCTTATTGGCTCTTGATCTGAGCAGATGGAATGGCGTGGATGCTC
TTGGTATGGCTTGTTTGAAACCTGAAGATAATTTTCAGTGCAGTGATGTC
CAATAAAATTTACTTAAAAGAAAGTTTAGGAGGCTATAGTATTTTGGTTT
CATTTTTAGATTGATTTCTTGTAACTAAAATTCCGGGGGAGTGGCGAAAT
GCGGAGTATTTGATACATTCTAACCGGGACAGTTTTATAAAATTTACATC
GAGTACCTCGAGTGCGGGGTCGATACTCGAAGAGGAAGTTTTTGGAGTTC
GACTCTTGCTATTCCGACGGCAAAAATGTCCGATATTAAATTTGGCAACT
TCGTCAGTTTTCCAACTAACATACAACAAAGTGTAATAagtttttgaata
aagaaaGTTGTGTGAGGCGAGTTATTAAATTGGTTATTTTCTGCTTTTCA
TtgccaacttttttttaaaattttggtcatCTCGCCCCCACCGATTCCCG
TAGATACTTTGTACTGTGTGTTAAGACTTAACGTATGATGACCGGAGTTT
TATTTCTTTGTTAACCGACAGACCTATTTCTGGTTCGTCTTAAAAATTTC
TAGATCTAGATTCAagtcttttttattaaaaaaattatgagtgcAACAGC
TCTATTAAAATAATGaatgaaataaatgaaaaaaaggagAAATGGTGGTA
GAGAAACCCGGGGATACTAGGGTTGAAGAATATCGGGTATGTGCGGACTA
ACTTCAGAAAACCGTCCCTTTTCGTCATAAAGATACCTAAGAAAAAATCA
CACTAAAAGTTATTGAGGGTAATAATACCAGGGGATTATaatattaaaga
ttttttcatagATTTATCTGCGATATAGTATGACTTTCGTGTTAAAATTT
AACCTCGATGGAAAACAAGTTGGTTTTGTGATCGTGAAAGAAGATGTTTT
CTATGGGAATTTGGATGTTTTGCGACATGAAATGGTCAAGCAGATTTCGG
ATCTGTTGCCTTCAGAGTTTCTTTTTGTCGCTAATAGCATGCCTGTtggc
ttaaagggacataacagtacttgcgaaatttgtaaacaaactgtatgcag
cagatacaaaatcaaaacaaatgtcacatgtcaaaataNNNNNTGATTGT
Tcgattgttttacaagtttgttttggacacgtgattttaattgttctctt
taatgacacgtggttcgcgcaatgtttacattttgctactgtaatgtccc
tttaagcaGATAAGGGTCGAATTATTAAAAAGGGTACTGATCCTAAAATA
ACTCAATTTGCCATAGGAGAATAGGCATTTTACAAGTTTAGGctcgaagt
gccaaaaaataagcagccgagcctcaacaaaagttttctggtttttataa
aaaaaggttgTATACAAGAACCTTCCAATAGTCCTGTTTACACTAGATTA
ATGCAACACATTTGGATGAAATGTAATGCGATTGCAGACNcagccgagcc
tcaacaaaagttttctggtttttataaaaaaaggttgTATACAAGAACCT
TCCAATAGTCCTGTTTACACTAGATTAATGCAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041104-exon-sc0002704-1491911889:9930..12465 | TCONS_00041104-exon-sc0002704-1491911889:9930..12465 | Clytia hemisphaerica | exon |
| TCONS_00041104-exon-sc0002704-1510915933:9930..12465 | TCONS_00041104-exon-sc0002704-1510915933:9930..12465 | Clytia hemisphaerica | exon |
| TCONS_00041104-exon-sc0002704-1575043694:9930..12465 | TCONS_00041104-exon-sc0002704-1575043694:9930..12465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002704 | supercontig | sc0002704:9930..12465 . |
Blast
The following BLAST results are available for this feature:
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