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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041098 ID=TCONS_00041098|Name=TCONS_00041098|organism=Clytia hemisphaerica|type=transcript|length=2121bp
CCCCTCGCCAAGATGCAAAAAGGTTGTTTGTTGAAAAGTATGGTGGCCCA
TGAAGGCCaatctatttttttaaatttaaaatgattatttattttctaaa
ctaaaaaaaaaagtcaaaacatatccattttgattttcgtaTTGTCCATT
CTGGTCCATTGCGTGGCCCATAGAGGATATGTGAATTTCAGTTAAGTAAA
AAAAACTactttggttttgatttttaaccgttttttaaATGTTGTGTCCT
TCATGGTCCATCGCGTGGCCCATTGAGGACACTAAAATTTCGGTTGCCGT
AAGAttatattgttttgatttttattttccaaaatggtaccTCTACATGT
GTGCTCATATTCTCATGAAAGTGAAAGAAGTCTTTGTCAGATGTGATGTG
TTCTTTTTGAACTTATGGAATCTTTTAGTTGTGTACTTTATTTGTGCACC
CACAAAATATTTGAGTATTATTACTTTCAACTGCTTTCAACACTGTAAAA
GAATGAATGAGAGGTGTGTTTAGGTTACAACATAATAATTTTTTGCTTCA
AAGTGATTGATTAAAATTTGGCTATCAAGATTAAGTTATCCATTTATGAG
AGGTATGTAGCCTATATTTATAATTTAGTTTTGATATATACAGATATGCA
GTGTTTTCTATAGAATTGTTTAGCCAAAATGAAAGGCTCTGTCAGAAAAT
CCTTTAATGACTTTATAAATCTAcgatattttttgtttaatttggaCCAA
ATGGAAGGCAAATAGAACCACGGGGGTACTAGGATTGCGAGCAGACGAGG
GAGGGGATGCCACCCGACTTCTAACCCTTGAacccttactgggactaaaa
aggagaaaacaaggTTGACAAGGAAACATTtcgtgaattttacgaccctt
attgggacaaatttgaccaaatttcgatctttccgggggtaaaaagttga
aattttcctgtTTCTCTTATTATGTCCAACCCTCAGTGGGACTTTGCAAA
TCCAAAAAAAGGTACCCtcaagggcggcacataccgtaccttCCATTTGC
CTAGATACCCCCTTCCCCCTGAATAGAACTCGTCAAAGCACCCTATGTTG
ATATTACTATATTGATGAGCTGTATTTAAGCCACCAAAATTTTTATCATT
CGTGAACCAGGGCTATAAAAGGTGTCGAGGGATACTATATATGAAATTCC
TACAACATCTCCGTGCAAGGCTTATAAGAACATAGCCTTAGTTTGTAAGG
GccactttttcatcaaaatttaaaggtTTGGTTGAAGTTCCCAAGCCCAC
ATCGCCCACACTCTCCAACACTGCACTACCCTATCAGGAAACCAAAACTT
CAAAAGTAAGCAAATAAGAAAgggacaaaattgaaaaaaatcttttctct
tctaacacaaatttttttcaatgtcctCAATGGGCCACGCGATGGACCAT
GAAGGACATCACttggaaaaagaaaagagaaaatttgttttttgtttcac
tttgaaaaataaaaagtaattaattttgcattacatttcaacttttcaag
atttaaaaatctttaaaaatcggGTTGGCTCTAATGGGCCACCATAGAAA
AGGATGAACGGACACTTTGAAGAAATGACCTCTTTGGTTTTGGTTCTTAA
AAAAGCACACTTTTTATCTAAGCTCGAGTTACAACCCTTCCTTACTCGGC
TTTTTGATAAAACAGTATTTATAACTTGTTTACTGTAACTCGTCtttctt
tctatttctattttaaatttctattcaataattcAGAGGGTACATACGTA
CAATTTcctgaatgtaaaataaaatggtaataaaataaaatctatctaaa
tataataaaatctagaatttaataaaaaggcaACCACTTTGGATTAAGAG
GTATAATTGAATATTGCAGAAAAAAGAACTTAGATTACTGAGGAATTTAA
TTGGTTACCAAAAAGAGCTACATGGCTGTATTGACattaaaaacaaacta
aaagGCTAAAAATGTGAGCGATAAAAATATGTGAAGGATAAAAACAATTC
Tgagtaaaaacattttattaactaatatataaaacataagataaattgaa
ataaattagaTTGCAAGGTTG Run BLAST on NCBI transcript from alignment at sc0002702:7742..9862 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041098 ID=TCONS_00041098|Name=TCONS_00041098|organism=Clytia hemisphaerica|type=transcript|length=2121bp|location=Sequence derived from alignment at sc0002702:7742..9862 (Clytia hemisphaerica)
CAACCTTGCAAtctaatttatttcaatttatcttatgttttatatattag
ttaataaaatgtttttactcAGAATTGTTTTTATCCTTCACATATTTTTA
TCGCTCACATTTTTAGCcttttagtttgtttttaatGTCAATACAGCCAT
GTAGCTCTTTTTGGTAACCAATTAAATTCCTCAGTAATCTAAGTTCTTTT
TTCTGCAATATTCAATTATACCTCTTAATCCAAAGTGGTtgcctttttat
taaattctagattttattatatttagatagattttattttattaccattt
tattttacattcaggAAATTGTACGTATGTACCCTCTgaattattgaata
gaaatttaaaatagaaatagaaagaaaGACGAGTTACAGTAAACAAGTTA
TAAATACTGTTTTATCAAAAAGCCGAGTAAGGAAGGGTTGTAACTCGAGC
TTAGATAAAAAGTGTGCTTTTTTAAGAACCAAAACCAAAGAGGTCATTTC
TTCAAAGTGTCCGTTCATCCTTTTCTATGGTGGCCCATTAGAGCCAACcc
gatttttaaagatttttaaatcttgaaaagttgaaatgtaatgcaaaatt
aattactttttatttttcaaagtgaaacaaaaaacaaattttctcttttc
tttttccaaGTGATGTCCTTCATGGTCCATCGCGTGGCCCATTGaggaca
ttgaaaaaaatttgtgttagaagagaaaagatttttttcaattttgtccc
TTTCTTATTTGCTTACTTTTGAAGTTTTGGTTTCCTGATAGGGTAGTGCA
GTGTTGGAGAGTGTGGGCGATGTGGGCTTGGGAACTTCAACCAAaccttt
aaattttgatgaaaaagtggCCCTTACAAACTAAGGCTATGTTCTTATAA
GCCTTGCACGGAGATGTTGTAGGAATTTCATATATAGTATCCCTCGACAC
CTTTTATAGCCCTGGTTCACGAATGATAAAAATTTTGGTGGCTTAAATAC
AGCTCATCAATATAGTAATATCAACATAGGGTGCTTTGACGAGTTCTATT
CAGGGGGAAGGGGGTATCTAGGCAAATGGaaggtacggtatgtgccgccc
ttgaGGGTACCTTTTTTTGGATTTGCAAAGTCCCACTGAGGGTTGGACAT
AATAAGAGAAacaggaaaatttcaactttttacccccggaaagatcgaaa
tttggtcaaatttgtcccaataagggtcgtaaaattcacgaAATGTTTCC
TTGTCAAccttgttttctcctttttagtcccagtaagggtTCAAGGGTTA
GAAGTCGGGTGGCATCCCCTCCCTCGTCTGCTCGCAATCCTAGTACCCCC
GTGGTTCTATTTGCCTTCCATTTGGtccaaattaaacaaaaaatatcgTA
GATTTATAAAGTCATTAAAGGATTTTCTGACAGAGCCTTTCATTTTGGCT
AAACAATTCTATAGAAAACACTGCATATCTGTATATATCAAAACTAAATT
ATAAATATAGGCTACATACCTCTCATAAATGGATAACTTAATCTTGATAG
CCAAATTTTAATCAATCACTTTGAAGCAAAAAATTATTATGTTGTAACCT
AAACACACCTCTCATTCATTCTTTTACAGTGTTGAAAGCAGTTGAAAGTA
ATAATACTCAAATATTTTGTGGGTGCACAAATAAAGTACACAACTAAAAG
ATTCCATAAGTTCAAAAAGAACACATCACATCTGACAAAGACTTCTTTCA
CTTTCATGAGAATATGAGCACACATGTAGAggtaccattttggaaaataa
aaatcaaaacaatataaTCTTACGGCAACCGAAATTTTAGTGTCCTCAAT
GGGCCACGCGATGGACCATGAAGGACACAACATttaaaaaacggttaaaa
atcaaaaccaaagtAGTTTTTTTTACTTAACTGAAATTCACATATCCTCT
ATGGGCCACGCAATGGACCAGAATGGACAAtacgaaaatcaaaatggata
tgttttgacttttttttttagtttagaaaataaataatcattttaaattt
aaaaaaatagattGGCCTTCATGGGCCACCATACTTTTCAACAAACAACC
TTTTTGCATCTTGGCGAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041098-exon-sc0002702-1491911889:7742..9862 | TCONS_00041098-exon-sc0002702-1491911889:7742..9862 | Clytia hemisphaerica | exon |
| TCONS_00041098-exon-sc0002702-1510915933:7742..9862 | TCONS_00041098-exon-sc0002702-1510915933:7742..9862 | Clytia hemisphaerica | exon |
| TCONS_00041098-exon-sc0002702-1575043694:7742..9862 | TCONS_00041098-exon-sc0002702-1575043694:7742..9862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002702 | supercontig | sc0002702:7742..9862 . |
Blast
The following BLAST results are available for this feature:
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