TCONS_00041096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041096
Unique NameTCONS_00041096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041096 ID=TCONS_00041096|Name=TCONS_00041096|organism=Clytia hemisphaerica|type=transcript|length=535bp
aaagtcgacataatgccgtacgtcaaatatcgaacttgctttcacccgcc
attacttgccttactcgccatttccctcgccactttagccgtagccgtag
agaatcccagatacataatctcgctaatggaagatagatgtccagttaTG
ATTTATCCCATGGGAAGGCACAGTAGTGTACCAAGTATTGACTGTCGTCT
AGGAGATCAGGACTAACTCCAACTCGGTGCTGTATTTTacttaatgaaaa
gtaaatgcTACTTTGCTAGGACCAACTCATACCATGTGAGGGTCGTTGGG
TGGACAGAAACTCTACAGGCCGTTCAGCGACTGAGCGACAAATCTGTGCT
AGTGTCTAGTAAGCttgcaagaaataaaaactttggggctttgttctttt
ttaggaaaataattcaaagtctGACGTCTACATAGAAGGCTATCCAGGCT
TAGTGGTCTCAAAGCCAGactaattttatcaaaattttatgttaTGCAGA
ATTCTGGAAGTTCTAAGCACTTCTCGAAGTCTCAA
Run BLAST on NCBI

transcript from alignment at sc0002702:56..590

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041096 ID=TCONS_00041096|Name=TCONS_00041096|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0002702:56..590 (Clytia hemisphaerica)
TTGAGACTTCGAGAAGTGCTTAGAACTTCCAGAATTCTGCAtaacataaa
attttgataaaattagtCTGGCTTTGAGACCACTAAGCCTGGATAGCCTT
CTATGTAGACGTCagactttgaattattttcctaaaaaagaacaaagccc
caaagtttttatttcttgcaaGCTTACTAGACACTAGCACAGATTTGTCG
CTCAGTCGCTGAACGGCCTGTAGAGTTTCTGTCCACCCAACGACCCTCAC
ATGGTATGAGTTGGTCCTAGCAAAGTAgcatttacttttcattaagtAAA
ATACAGCACCGAGTTGGAGTTAGTCCTGATCTCCTAGACGACAGTCAATA
CTTGGTACACTACTGTGCCTTCCCATGGGATAAATCAtaactggacatct
atcttccattagcgagattatgtatctgggattctctacggctacggcta
aagtggcgagggaaatggcgagtaaggcaagtaatggcgggtgaaagcaa
gttcgatatttgacgtacggcattatgtcgacttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025108XLOC_025108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041096-exon-sc0002702-1491911889:56..590TCONS_00041096-exon-sc0002702-1491911889:56..590Clytia hemisphaericaexon
TCONS_00041096-exon-sc0002702-1510915933:56..590TCONS_00041096-exon-sc0002702-1510915933:56..590Clytia hemisphaericaexon
TCONS_00041096-exon-sc0002702-1575043694:56..590TCONS_00041096-exon-sc0002702-1575043694:56..590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002702supercontigsc0002702:56..590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208335	0.524451	1.28939	1.33581	1.23622	1.89735	1.02093	1.99068	0.915863	0.365527	1.13782	1.67863	1.64647	1.17977	0.194307	0.706345	0.86115	0.648483	0.726067	0.408108	0.623029	0	0.135544	0.262045	2.03243	1.42828	0.354912	2.08365	1.00799	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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