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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041093 ID=TCONS_00041093|Name=TCONS_00041093|organism=Clytia hemisphaerica|type=transcript|length=286bp
TAGTTGCGTTTGTTACGCTTACGGTACCTATGTCAACAATACATCGAAGC
CTCCATCTCCACAAAGAATGTCATCGTAGCTCTAGAGTGTGCTGAAGATT
TGGGTCTGGATCTGATAAAGGAATTATGTATGCGTTTCATTGTTCGTGAA
GTACATTTCAACCAAATCATAATGAGTACCGACTTTGAAAACTTGGATAA
AGGTTTAATGATCGAAGTGGTCCGAAGGAAGCAACTCCAACAGCAAAATC
CGATGCCAGAAGCACCGAGCCCTGCAGCAATGAATG Run BLAST on NCBI transcript from alignment at sc0002700:15113..17949- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041093 ID=TCONS_00041093|Name=TCONS_00041093|organism=Clytia hemisphaerica|type=transcript|length=2837bp|location=Sequence derived from alignment at sc0002700:15113..17949- (Clytia hemisphaerica)
TAGTTGCGTTTGTTACGCTTACGGTACCTATGTCAACAATACATCGAAGC
CTCCATCTCCACAAAGAATGTCATCGTAGCTCTAGAGTGTGCTGAAGATT
TGGGTCTGGATCTGATAAAGGTATAATATTATGTTACACATGTTTTTCTG
ATACAGATAATACTCAGATACTCAGACTCATATTGACTTGTTTTAGATTT
TTACTTCGATGGATCGATATATATATATAAACATGCTTAAAAACTTCAAT
TTTTGAACCTATCGTTTACACACGTGTGTTTTTTCTAGTTGGCATTTTTT
TCTCCAATAGATGTGTCACAAAATCGTTCTTTTTCGTTGAAAACGCATTT
GTTTTCTCTTTTTCATCTAGTAATTATAAGTTGAAATAAAGATGCGAGTG
AAAATTTTTATTGAATGGTGAAATATATTTAAATTGTTGGGAATTGGTCC
AATGTCTGCGGAGTTGTCTTAAAATTTGACGATAGTCGTGCAGAAGAATC
TTAATGCTATAATACATCTATCTGCAGAAACATGTTTCGTCCTTCCCAGG
ACTCATCAGGTGCGGCTCGGGTAAGCGAGCATATGACTGCTGTTGTCATC
AGAGTGCTCAAAAAACTAAGTGTTGAGCTTCGCATAATCGCTTGTGGTGA
ACGGAGAAGTAGAGCTTGCTCCTGCCTCAACACAGTCTATAGAGTGCTCA
AAGAACCGAAATTCTGAGCGTAATACATCTATGGTATGGTATAATAGCAA
GTTTTATAACTCACCATTTTTACAAGCTTCTTTTGTTTATACGTTGCTCC
TTAGGAATTATGTATGCGTTTCATTGTTCGTGAAGTACATTTCAACCAAA
TCATAATGAGTACCGACTTTGAAAACTTGGATAAAGGTTTAATGATCGAA
GTGGTCCGAAGGAAGCAACTCCAACAGGTACATCCGCCATCTTTGATCGA
AGTTTTTTTCTGAATTGGTACCCGTAAAGAAGCCATTGCACTGTTAAAAA
TTAACGTCTAACGCCGCTACATCATAAAAGGTTTTCGAGGGAAAGTAGAT
ATAGCGCTCTCGATGCATTCACACCGCTATAGTGCCGCCATTAGGGTACT
ACTTTTCAAAAAAGTCCTATGAAAGATTTTGCTTGGCTGGGATTGAGAAA
CTTGGTCCATGGTATATAAAGATCAGTGGGTTCCACAGACCTACCACAGA
TATCTTATATAAAACACTACATAGAGCTTTTCCTATCCAATTTGAAATAA
TTCGCCATCTTGAATGAAGTGACGTCATATTTTAGCTTGCGTGATTGAAA
TTTTGAAGTCATTGCAGTGTCAAAAAACTTCAACAGTGAAGTAGTTTCTA
CTCTGGTGTACTGTGACCTACTTTCATCAAAGATGGCGCAGGATTTTGCT
TCGCCTGCCGTTGCTTGGGGAATACAAAATAGCTTTATCTAGTGTTTTAT
ATAAGTTATCTGTGGTACACTTTCAGTGGGGGGCGTACGGGACTTCCAAA
AACCGATAAACCGCCCAAAAATAGCTCTTTCACCGATAAACCGACAAAAT
TTATCCTCTTCACCGACACCGATTTTTTACTCTTGCTCCAAAAGGTTTGT
AACTCTTAATAAGGTAGACTGCACGCATCCCGAAATTGTTATAACAAAAC
TAACCCATCAATCTCCAATCTATGCAGGAAAATCATACATCCTTATGGTT
ATGGAAATATTTTGTGTATTCTTGGGGTTGTAAACTATGAATTTGGCGTC
TGCGTTATAGTTTAGCTTTTTTAGCCTCCCTTCCTATAGCATCATATATG
GCTACGATACTCTAATGTTTCTATTCCCGCTAATCTTTATTATTCTCTCT
TGAGTATGCTGGCTTATGATGGGAAATTGTAAAGTCAAATTATTGTTGTT
GTGGAGGCAGAAGGAGGCGCAACCATGGTTTGCGTCGACGGGAAAACTTT
CAGTTTCCAACCTTCGTTTTGGCTAAAAACGCCCTATTTTAAACACTTTT
TTGCCGAAAATAAAGCTAGGTCAATGAACTTTTGTATTTTCTCAACCTGA
CGGAATCATTTGTAAAAGTTACTTGTCCACGATTTTAAACTTAAGAATTA
TAATCTCTAAAATTGTGTGTTTGAAAAAAGCATCTTTTGAGGCCCTAAAA
GTATTACTGGGCAGTTTTTCCATCGGAGCTTATAGACTTATGGGCTTATG
GGCTATTGTTGAACGTATATTATCTTTTCACTGGGACAGATTTGACTAAG
GTCGCTGATGCAGGAGTGTTTTCTGCGAGCGAAGCGAGCAAAGAAAATTA
GTTTTGATTATTTATGCACAAGGACAATCATTTCTGAGACACCGACGTAT
TTGACAATCACCGAAAACCGATCGCTATCGATTCTTTCACCGATAAACCG
AACAAAAACAGCTCAATCACCGGCACCGTAATGTTTTCCCTTCACCGATA
ACCGCACGAATTTCGAGCTCTTCACCGATAAACCGACAAGAAAAGGGGCT
GAAACCGACAAACCGCTCAAAACCGCTTTCCCGTACGCCCCCCACCTTTC
AGTGGAGTCTCCATAACTCGAACACGCAGGGGGGGGCACAAATTTGTATG
AGGCATTGGTAACTGAGAGGTTTGTTCGTGCTAAGAAGAGATTCGAGTTA
TAGAAGTTCGAGTTAAAGAGACTCCGCTGTATATGTTTAGAACAAGGCTT
AATGATTTAAAAATAATGCAGTGTTTTAATGTCTTGCCCAAAGCTGCTGG
AATATTCGTTATTAAATTCTTAGAAATTCTTAATGTTATTTTAGCAAAAT
CCGATGCCAGAAGCACCGAGCCCTGCAGCAATGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041093-exon-sc0002700-1575043694:17830..17949 | TCONS_00041093-exon-sc0002700-1575043694:17830..17949 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1575043694:17023..17145 | TCONS_00041093-exon-sc0002700-1575043694:17023..17145 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1575043694:15113..15155 | TCONS_00041093-exon-sc0002700-1575043694:15113..15155 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1510915933:17830..17949 | TCONS_00041093-exon-sc0002700-1510915933:17830..17949 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1510915933:17023..17145 | TCONS_00041093-exon-sc0002700-1510915933:17023..17145 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1510915933:15113..15155 | TCONS_00041093-exon-sc0002700-1510915933:15113..15155 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1491911889:17830..17949 | TCONS_00041093-exon-sc0002700-1491911889:17830..17949 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1491911889:17023..17145 | TCONS_00041093-exon-sc0002700-1491911889:17023..17145 | Clytia hemisphaerica | exon |
| TCONS_00041093-exon-sc0002700-1491911889:15113..15155 | TCONS_00041093-exon-sc0002700-1491911889:15113..15155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002700 | supercontig | sc0002700:15113..17949 - |
Blast
BLAST of TCONS_00041093 vs. Swiss-Prot (Human)
Match: LZTR1 (Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens GN=LZTR1 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.144e-19 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 31 CQQYIEASISTKNVIVALECAEDLGLDLIKELCMRFIVREVHFNQIIMSTDFENLDKGLMIEVVRRKQLQQQNPMPEAP 267
C+QYIEAS+ +NV+V E A L L +KE C+ F+V+E HFNQ+IM +FE L L++E+VRRK Q P P P
Sbjct: 566 CRQYIEASVDLQNVLVVCESAARLQLSQLKEHCLNFVVKESHFNQVIMMKEFERLSSPLIVEIVRRK----QQPPPRTP 640
The following BLAST results are available for this feature:
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