TCONS_00041090 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041090
Unique Name	TCONS_00041090
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1656

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002700:9214..14291-

transcript sequence

>TCONS_00041090 ID=TCONS_00041090|Name=TCONS_00041090|organism=Clytia hemisphaerica|type=transcript|length=1656bp
AAGATTTGAGGAACCTATTGGATTCAGAAGAAGGCAAAAAATGGAGTGAT
TTCAAACTTGTTCTAAACGGGGAAGCTTTTGAGACACACAAGaTTGTATT
GGCTGCTCGGAGTAGcTATTTTGAAGCTATGTTTCGCTCTTTCTCGCCAC
CTGACAACCAAGCTAATgTGACTATTGGAGAAACTATTCCTTCACCGCAG
TCCTTCTCATCGCTTTTGCGGTACATTTACTACGGCGATGTTACAATGCC
ACCTGAAGACTCATTGTATCTGTTCTCTGCACCCTTCTATTATGGCTTCA
CTAATAGCAGACTCCAGgcattttgtaaacaaaacttagAAATGAATGTC
ACAAACCAAAATGTCATCCATATACTCGAGGCATCGCATGGTATCGGTGC
CGTAGACATGAAGCGGCATGCGCTAAGTATTATCGTTCAACAGTTTCATA
AGGTCGCTCGTCTGTCGGACATTAGGCGCTTAAAGAAAGAACTTTTACTT
GATATATTAGATGCTGTAGCTGAGTTCATGACTCCACCTCCCAGTACCAC
GGAAGAAGTTGTACCGGCATTTTCTTCTGAAAGTTGAGAACTATAGATTG
TTGCCCTTTTGAACTTATGCTGAGGATTGTGGTGCTGTGATTTATCATGG
ACTCTTATTTGGGCTCCAAGTTTTACTTGTGTTTTGCAAGctaattgggc
tattccagaaaacaCTTTTACCCCAGAGGAGGTTTTTTTAGGGAAAGGtg
acccctggattttttttcaggacccccttggatttttttctgattttttt
taaccaccctggattttcgacctcgttttactgaccaccctggattttcc
aaCTTATTTCACttaccaccctggatttttgcaCTCGAAAAATCACACCC
TCTGGATTATTTTATTTTCGAGGCCAcactggacgtcacacctcctcaac
atagggggcacagactatttctggaatagccagATTCTTCCCAGCTTTTC
CCTGGAAATGAATTCTTTcagtttaaaatgttcttaaaaacttCGCCACT
GACAAAACCAATTGTGAAATTGTACAGAAACAAGAAGAAAAGCAACAAAA
TTGCTGAAAAATCTGGTAAAAGCTTGATATATGGAAAGACTCTTATTTTG
GGCTTTGAGACAATGAGAGCTTAGCTGGGTTTTGTTTCAAAGAAACTGAT
CAAACCCAGAGACAGGCTTACCCAGAAACAAACCAATGGTTATATTTAAA
GGAAAATGGTAAAGTTATCATTGTATCAGGAGTTGGGTTTGCCGAGCAGT
ggaataaatgtattttattctGAAGTGGTAGAACATATTTCAATACAGTT
TGTCCGGTTCAGCAGAACAGAATTTCTATAAAGTAAAAAGTTCTCATACT
TTGCATTGCTTTTTATGACCTAAATATTCGATAATTTTATTACGTTTGGG
AATCGGATAATCTATTGAATGAGAAAAGACATTCAGTCCTTTTGCAAATT
ccagttttaaaattttaataccTGCTTCGCTTTTTTTCCGAACATACTGT
AGATTTGTAAGAGTTTATGATACACGCCCTTTttacagacccggtgggac
tccaaaaattggccaaaatattgtctcAGTTGAAAATTATTCTCAAGCTT
TTGTCC

Run BLAST on NCBI

transcript from alignment at sc0002700:9214..14291-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041090 ID=TCONS_00041090|Name=TCONS_00041090|organism=Clytia hemisphaerica|type=transcript|length=5078bp|location=Sequence derived from alignment at sc0002700:9214..14291- (Clytia hemisphaerica)
AAGATTTGAGGAACCTATTGGATTCAGAAGAAGGCAAAAAATGGAGTGAT
TTCAAACTTGTTCTAAACGGGGAAGCTTTTGAGACACACAAGGTATTTTA
TGACTGTTCTCGCCCTACATTTAGAGGGGTCTTGGATACACACAAGGGGT
GTGTTGAAAGCTTGAATTTCCTAAGGGGGGTTCGCCAGTTAGGGGGGGAG
GGGTTCTTCATAAAATTATGTACAAACGTTTCCTGAGGGGGTCTGAATTT
TCAAATGTATTTCCGATGGGGGTTACCACTTAAAGGTGGTGTCTTCCTAC
CTAGGGGGTGGTCTTGACCCCTCTAGAAACTATGCTAATTTCTTCTTCCT
GTACTTATCTCAGTAGCGAAATTATGTATTCGAAGTAAATCGAAGGAGAA
GGTGTAAAGTAAAGTTGATATACCTCCAAAATCCCCGTCCACTTTGCCCG
ACGACGGTAAAAAAAAATAAAAAATGCCGTCGTCTCTTTAGGTGAGCAAA
AGCGATACAGAGCCGTACATCAACTATCGACTTTGTTTTGCGTCGACTTA
CCACTTACCGTCGCCCTCAATATCCTCTGATACACAAACTCGCTAATTTT
GTGATTTTTACAGATAGAGATTTAGGAATGATGGTCTTAACACTGGGACT
TTTTTTGAGGAGATCCTGAAAATTTGACGTTTTGAAATCTTATATATCTA
ATAAGGATCAAACCTAAATGTTTCTATCTTGCTATTTTTTTATGTTTAAG
ATTGTATTGGCTGCTCGGAGTAGGTGAGAAACTCATTTTATTACACACCA
CAAGAAGACTGGGTTCGAGTCTAACTTATGGTTCGAAAATAACGTTAAAG
TATCTATCTGATAATATAGCGGTAGTACAACGGCTTCGTTTTTGACGTCG
TTAAAAACCCTTGTAAACTCTGACTAAACCTTCTTTTATAAGTAAGTTTG
CGACCGCATTCAGAGGCGACCCGAAGGCTCGTCTTTCGATAGCTATCTAC
CCAAAGGTAGGAGAGGGTGCCACTTTTTCTCCCTGGATTGCTCCACTTAC
CTTCGACCCTTCTCTTAGTTGCTGAGCATCAAGCAGAGAGGCATCAAGTA
CCATTTTGGAAATCTTTGGTATGACCCGGCTGGGGGTTGAGCCCAAAACT
TTGCGCACCGTAGCCGGATGCTCTACCACTGTACTACAGTCGCTTCTTTT
ACGTAGTGAATGTGCAAATAATGAAATGAGTTGAATATCAGCATGAAATA
TTTGACTTATCATACACTACCAACACGGAGTATGATTCATATTGGCCAAT
TGCATCGCTAGTACACTGAGCTATCAAGTCCAAACTCGATCAGGAGTAGC
TTCGTTGTTTTATCATTTTAGCAACCTGACATTGGTTCATTACTTAAAGG
TTTTATGTTTAAATAAGAGGATATCGTTCGCACTTACTCATCAATTTTAA
TTTACAAGCTTTCTCGCATTAGATTGACACGGATGTGGAGAAAGGTTGGT
CAGAAAGAGGAAAAGAAAAGCAATATTTTGTTTATATCGGCAGAATATAA
CAATAGGCAGACACTGTCCTGATATGAAATATGTGTCTGATATGAAACGG
AAACACTCATGTAAAAATAAAACCTTTAAAAACTACTTTGTTTGGAAACT
ATACCTGTTCTTCTTCTACGACATTTTTGGTATCATAATTTATCTATTCT
TTTTCTGTTGTTTTTTTCAGCTATTTTGAAGCTATGTTTCGCTCTTTCTC
GCCACCTGACAACCAAGCTAATGTAAGTATATTATACGTATTATAAGTTT
TAAACGAACAAAAAATTAAGATCAACGGTTTTTTTTTGGTTTTTTTTTGT
TTTGTTTTTTACGATCTTTCGTCTTTTTTCAAAACCTCATCAAGTATCAT
ATCAGACTAGGTTATATTCGCTGTCTTTGGTCGAAGCTTTTTTGAAAGTG
GTACCCGCAATGAAGCCATTGCTGTGTTTAAACGACGCTACATCATCACA
AGTGTTTAAGGAAAATTAGACCTAAGCGGTCTCGATGTTTTGACGAATGC
TACCATTAGGGTACCATTTCCAAAAAAACTCCGATGAAAGGTTTCGGTTG
GCCGAGATTGGAAACTCTCGTCTCCAGGCTCTACACAATCGACTCTTGTT
TGTTTGAATTCAAAAGGGGAATCTCATTTGTTCGAATTACAAAGAGATTT
GAATTATAGAAAGTAGTTTGGGAAGGTTTCCCTTGACGGGGTCTGGGAAC
AAGTTCAAATTATAGAGAGATTTAAATAATAGAAGTTCGAATAAGCGAAA
GTCTGCTGTAGATCAGTGTTTTTACACTGCTTGTTTAAAAGCCGTCTAGT
ATGATAAATTACTATTACTACGAAGATAATTTTTTTACATTAGGTGACTA
TTGGAGAAACTATTCCTTCACCGCAGTCCTTCTCATCGCTTTTGCGGTAC
ATTTACTACGGCGATGTTACANTTCGTTGTCTATTTTCTGTTTGGATTTC
TAGTTTTCTACTTAAGTTCTTAATATTTCGACCAGTCATTAATAAAACCT
TTTCACAGCCACAAGCATGATAAATTACTATTACTACGGAGATAATTTTT
TTATATTAGGTGACTATTGGAGAAACTATTCCTTCGCCGCAGTCCTTCTC
ATCGCTTTTGCGGTACATTTACTACGGCGATGTTACAATGCCACCTGAAG
ACTCATTGTATCTGTTCTCTGCACCCTTCTATTATGGCTTCACTAATAGC
AGACTCCAGGTATGTGTTAGAAAAAACGAGCAATTTCTGACAAAGAGGTT
TTTGAAGAAGGATTACGTTATTTTCAGGTGATTCGCTCACTTTTTCTGTG
GAAATTGCACAAAAATACTCAAAAAATGTAGCGAACATCGGTAAGCTCCA
ACAATCTTGGACGCTCTTATAAAAAAACGCACAAATTGAGTATGGGTGCC
TTAAATAAACTACACGTTTTTTTGTTTTTTTTTTAATAGACACACTTTTT
AGAAACATGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTAGTAACAT
GCGTAGTCGTGTTTTATAATAACAATTTTACAAGGACATAGGCACAGTTT
CGGCAAACTCGAGAGTGCAAATTAAAAACAATCACACTCTCAAATTTCAG
AAACAGCTAAAAGAAAGCAGATTTTTAGACCAATAAGTAAACAAAGTAAG
CATAATTAAGCAAAAAATCACAAAAAACAGCCGGGCATCAACCAAAATTT
AATAGTTTCTTATAAAAAAGTTTGTTTTGAATTAATTTTGACTTTATTTC
TAAATTTTTCATTTTTAGGCATTTTGTAAACAAAACTTAGAAATGAATGT
CACAAACCAAAATGTCATCCATGTAAGTCATCCAAAGCTCTTCTTAATTC
ACCCCTGTATCAGTGACCCGGTCAGATCCGCCCCTGTGCATAATATGGTG
AAAAAAGGCCAGAAAATCGCCTAATTTTTAACTCTGGTAGGATATTTTGT
AACCCCGGTCAAAATCGAAAAATAGTAAAGTCTAGGAAAAACAGACTCCG
CTAATACTTGAAAGTGAACTTTTTCCCTACCCCGGTGGAAATTAGTTAAA
GGTTTCCAAAGCAGTAGAGATTGTGAGATCCGGTGAAATCATAGCCACCC
CGGTGGATTTCAAAAAAACTTCACTGAGAAAGGGGTGGTCCTTATACCAA
CTCGTAGTTACTCATTACAATTTTCTTTTTACCTTCAGATACTCGAGGCA
TCGCATGGTATCGGTGCCGTAGACATGAAGCGGCATGCGCTAAGTATTAT
CGTTCAACAGTTTCATAAGGTCGCTCGTCTGTCGGACATTAGACGCTTAA
AGAAAGAACTTTTACNTTCATAAGGTCGCTCGACTGTCGGACATTAGGCG
CTTAAAGAAAGAACTTTTACTTGATATATTAGATGCTGTAGCTGAGTTCA
TGACTCCACCTCCCAGTACCACGGAAGAAGTTGTACCGGCATTTTCTTCT
GAAAGTTGAGAACTATAGATTGTTGCCCTTTTGAACTTATGCTGAGGATT
GTGGTGCTGTGATTTATCATGGACTCTTATTTGGGCTCCAAGTTTTACTT
GTGTTTTGCAAGCTAATTGGGCTATTCCAGAAAACACTTTTACCCCAGAG
GAGGTTTTTTTAGGGAAAGGTGACCCCTGGATTTTTTTTCAGGACCCCCT
TGGATTTTTTTCTGATTTTTTTTAACCACCCTGGATTTTCGACCTCGTTT
TACTGACCACCCTGGATTTTCCAACTTATTTCACTTACCACCCTGGATTT
TTGCACTCGAAAAATCACACCCTCTGGATTATTTTATTTTCGAGGCCACA
CTGGACGTCACACCTCCTCAACATAGGGGGCACAGACTATTTCTGGAATA
GCCAGATTCTTCCCAGCTTTTCCCTGGAAATGAATTCTTTCAGTTTAAAA
TGTTCTTAAAAACTTCGCCACTGACAAAACCAATTGTGAAATTGTACAGA
AACAAGAAGAAAAGCAACAAAATTGCTGAAAAATCTGGTAAAAGCTTGAT
ATATGGAAAGACTCTTATTTTGGGCTTTGAGACAATGAGAGCTTAGCTGG
GTTTTGTTTCAAAGAAACTGATCAAACCCAGAGACAGGCTTACCCAGAAA
CAAACCAATGGTTATATTTAAAGGAAAATGGTAAAGTTATCATTGTATCA
GGAGTTGGGTTTGCCGAGCAGTGGAATAAATGTATTTTATTCTGAAGTGG
TAGAACATATTTCAATACAGTTTGTCCGGTTCAGCAGAACAGAATTTCTA
TAAAGTAAAAAGTTCTCATACTTTGCATTGCTTTTTATGACCTAAATATT
CGATAATTTTATTACGTTTGGGAATCGGATAATCTATTGAATGAGAAAAG
ACATTCAGTCCTTTTGCAAATTCCAGTTTTAAAATTTTAATACCTGCTTC
GCTTTTTTTCCGAACATACTGTAGATTTGTAAGAGTTTATGATACACGCC
CTTTTTACAGACCCGGTGGGACTCCAAAAATTGGCCAAAATATTGTCTCA
GTTGAAAATTATTCTCAAGCTTTTGTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025104	XLOC_025104	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002700	supercontig	sc0002700:9214..14291 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.6573e-09	0	1.30475	0	0	0	6.43697	9.71947	6.20625	0.047329	6.71341	0.0184563	3.58776	3.85203	4.05832e-09	3.59471e-05	0.00123105	1.87859	0.519653	2.30092e-07	1.97014e-09	4.20196e-08	3.4086e-09	6.85247e-10	0.853126	7.5472	3.21483	0.0879044	0	0

Blast

[Close]

BLAST of TCONS_00041090 vs. Swiss-Prot (Human)
Match: LZTR1 (Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens GN=LZTR1 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 4.112e-59
Identity = 106/173 (61.27%), Postives = 135/173 (78.03%), Query Frame = 3

Query:    3 DLRNLLDSEEGKKWSDFKLVLNGEAFETHKIVLAARSSYFEAMFRSFSPPDNQANVTIGETIPSPQSFSSLLRYIYYGDVTMPPEDSLYLFSAPFYYGFTNSRLQAFCKQNLEMNVTNQNVIHILEASHGIGAVDMKRHALSIIVQQFHKVARLSDIRRLKKELLLDILDAVA 521
            D++  L+   G ++ D  L+L+G     HK +LAARSSYFEAMFRSF P D Q N++IGE +PS Q+F S+LRYIYYG+V MPPEDSLYLF+AP+YYGF N+RLQA+CKQNLEMNVT QNV+ ILEA+    A+DMKRH L IIV QF KV++L  +R L ++LLLDI+D++A
Sbjct:  654 DMKAYLEGA-GAEFCDITLLLDGHPRPAHKAILAARSSYFEAMFRSFMPEDGQVNISIGEMVPSRQAFESMLRYIYYGEVNMPPEDSLYLFAAPYYYGFYNNRLQAYCKQNLEMNVTVQNVLQILEAADKTQALDMKRHCLHIIVHQFTKVSKLPTLRSLSQQLLLDIIDSLA 825

The following BLAST results are available for this feature:

BLAST of TCONS_00041090 vs. Swiss-Prot (Human)

BLAST of TCONS_00041090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LZTR1	4.112e-59	61.27	Leucine-zipper-like transcriptional regulator 1 OS...	[more]

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TCONS_00041090 (transcript) - C. hemisphaerica