TCONS_00041089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041089
Unique NameTCONS_00041089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041089 ID=TCONS_00041089|Name=TCONS_00041089|organism=Clytia hemisphaerica|type=transcript|length=1618bp
GATTCAGAAGAAGGCAAAAAATGGAGTGATTTCAAACTTGTTCTAAACGG
GGAAGCTTTTGAGACACACAAGaTTGTATTGGCTGCTCGGAGTAGcTATT
TTGAAGCTATGTTTCGCTCTTTCTCGCCACCTGACAACCAAGCTAATgTG
ACTATTGGAGAAACTATTCCTTCGCCGCAGTCCTTCTCATCGCTTTTGCG
GTACATTTACTACGGCGATGTTACAATGCCACCTGAAGACTCATTGTATC
TGTTCTCTGCACCCTTCTATTATGGCTTCACTAATAGCAGACTCCAGgca
ttttgtaaacaaaacttagAAATGAATGTCACAAACCAAAATGTCATCCA
TATACTCGAGGCATCGCATGGTATCGGTGCCGTAGACATGAAGCGGCATG
CGCTAAGTATTATCGTTCAACAGTTTCATAAGATTAGGCGCTTAAAGAAA
GAACTTTTACTTGATATATTAGATGCTGTAGCTGAGTTCATGACTCCACC
TCCCAGTACCACGGAAGAAGTTGTACCGGCATTTTCTTCTGAAAGTTGAG
AACTATAGATTGTTGCCCTTTTGAACTTATGCTGAGGATTGTGGTGCTGT
GATTTATCATGGACTCTTATTTGGGCTCCAAGTTTTACTTGTGTTTTGCA
AGctaattgggctattccagaaaacaCTTTTACCCCAGAGGAGGTTTTTT
TAGGGAAAGGtgacccctggattttttttcaggacccccttggatttttt
tctgattttttttaaccaccctggattttcgacctcgttttactgaccac
cctggattttccaaCTTATTTCACttaccaccctggatttttgcaCTCGA
AAAATCACACCCTCTGGATTATTTTATTTTCGAGGCCAcactggacgtca
cacctcctcaacatagggggcacagactatttctggaatagccagATTCT
TCCCAGCTTTTCCCTGGAAATGAATTCTTTcagtttaaaatgttcttaaa
aacttCGCCACTGACAAAACCAATTGTGAAATTGTACAGAAACAAGAAGA
AAAGCAACAAAATTGCTGAAAAATCTGGTAAAAGCTTGATATATGGAAAG
ACTCTTATTTTGGGCTTTGAGACAATGAGAGCTTAGCTGGGTTTTGTTTC
AAAGAAACTGATCAAACCCAGAGACAGGCTTACCCAGAAACAAACCAATG
GTTATATTTAAAGGAAAATGGTAAAGTTATCATTGTATCAGGAGTTGGGT
TTGCCGAGCAGTggaataaatgtattttattctGAAGTGGTAGAACATAT
TTCAATACAGTTTGTCCGGTTCAGCAGAACAGAATTTCTATAAAGTAAAA
AGTTCTCATACTTTGCATTGCTTTTTATGACCTAAATATTCGATAATTTT
ATTACGTTTGGGAATCGGATAATCTATTGAATGAGAAAAGACATTCAGTC
CTTTTGCAAATTccagttttaaaattttaataccTGCTTCGCTTTTTTTC
CGAACATACTGTAGATTTGTAAGAGTTTATGATACACGCCCTTTttacag
acccggtgggactccaaaaattggccaaaatattgtctcAGTTGAAAATT
ATTCTCAAGCTTTTGTCC
Run BLAST on NCBI

transcript from alignment at sc0002700:9214..14271-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041089 ID=TCONS_00041089|Name=TCONS_00041089|organism=Clytia hemisphaerica|type=transcript|length=5058bp|location=Sequence derived from alignment at sc0002700:9214..14271- (Clytia hemisphaerica)
GATTCAGAAGAAGGCAAAAAATGGAGTGATTTCAAACTTGTTCTAAACGG
GGAAGCTTTTGAGACACACAAGGTATTTTATGACTGTTCTCGCCCTACAT
TTAGAGGGGTCTTGGATACACACAAGGGGTGTGTTGAAAGCTTGAATTTC
CTAAGGGGGGTTCGCCAGTTAGGGGGGGAGGGGTTCTTCATAAAATTATG
TACAAACGTTTCCTGAGGGGGTCTGAATTTTCAAATGTATTTCCGATGGG
GGTTACCACTTAAAGGTGGTGTCTTCCTACCTAGGGGGTGGTCTTGACCC
CTCTAGAAACTATGCTAATTTCTTCTTCCTGTACTTATCTCAGTAGCGAA
ATTATGTATTCGAAGTAAATCGAAGGAGAAGGTGTAAAGTAAAGTTGATA
TACCTCCAAAATCCCCGTCCACTTTGCCCGACGACGGTAAAAAAAAATAA
AAAATGCCGTCGTCTCTTTAGGTGAGCAAAAGCGATACAGAGCCGTACAT
CAACTATCGACTTTGTTTTGCGTCGACTTACCACTTACCGTCGCCCTCAA
TATCCTCTGATACACAAACTCGCTAATTTTGTGATTTTTACAGATAGAGA
TTTAGGAATGATGGTCTTAACACTGGGACTTTTTTTGAGGAGATCCTGAA
AATTTGACGTTTTGAAATCTTATATATCTAATAAGGATCAAACCTAAATG
TTTCTATCTTGCTATTTTTTTATGTTTAAGATTGTATTGGCTGCTCGGAG
TAGGTGAGAAACTCATTTTATTACACACCACAAGAAGACTGGGTTCGAGT
CTAACTTATGGTTCGAAAATAACGTTAAAGTATCTATCTGATAATATAGC
GGTAGTACAACGGCTTCGTTTTTGACGTCGTTAAAAACCCTTGTAAACTC
TGACTAAACCTTCTTTTATAAGTAAGTTTGCGACCGCATTCAGAGGCGAC
CCGAAGGCTCGTCTTTCGATAGCTATCTACCCAAAGGTAGGAGAGGGTGC
CACTTTTTCTCCCTGGATTGCTCCACTTACCTTCGACCCTTCTCTTAGTT
GCTGAGCATCAAGCAGAGAGGCATCAAGTACCATTTTGGAAATCTTTGGT
ATGACCCGGCTGGGGGTTGAGCCCAAAACTTTGCGCACCGTAGCCGGATG
CTCTACCACTGTACTACAGTCGCTTCTTTTACGTAGTGAATGTGCAAATA
ATGAAATGAGTTGAATATCAGCATGAAATATTTGACTTATCATACACTAC
CAACACGGAGTATGATTCATATTGGCCAATTGCATCGCTAGTACACTGAG
CTATCAAGTCCAAACTCGATCAGGAGTAGCTTCGTTGTTTTATCATTTTA
GCAACCTGACATTGGTTCATTACTTAAAGGTTTTATGTTTAAATAAGAGG
ATATCGTTCGCACTTACTCATCAATTTTAATTTACAAGCTTTCTCGCATT
AGATTGACACGGATGTGGAGAAAGGTTGGTCAGAAAGAGGAAAAGAAAAG
CAATATTTTGTTTATATCGGCAGAATATAACAATAGGCAGACACTGTCCT
GATATGAAATATGTGTCTGATATGAAACGGAAACACTCATGTAAAAATAA
AACCTTTAAAAACTACTTTGTTTGGAAACTATACCTGTTCTTCTTCTACG
ACATTTTTGGTATCATAATTTATCTATTCTTTTTCTGTTGTTTTTTTCAG
CTATTTTGAAGCTATGTTTCGCTCTTTCTCGCCACCTGACAACCAAGCTA
ATGTAAGTATATTATACGTATTATAAGTTTTAAACGAACAAAAAATTAAG
ATCAACGGTTTTTTTTTGGTTTTTTTTTGTTTTGTTTTTTACGATCTTTC
GTCTTTTTTCAAAACCTCATCAAGTATCATATCAGACTAGGTTATATTCG
CTGTCTTTGGTCGAAGCTTTTTTGAAAGTGGTACCCGCAATGAAGCCATT
GCTGTGTTTAAACGACGCTACATCATCACAAGTGTTTAAGGAAAATTAGA
CCTAAGCGGTCTCGATGTTTTGACGAATGCTACCATTAGGGTACCATTTC
CAAAAAAACTCCGATGAAAGGTTTCGGTTGGCCGAGATTGGAAACTCTCG
TCTCCAGGCTCTACACAATCGACTCTTGTTTGTTTGAATTCAAAAGGGGA
ATCTCATTTGTTCGAATTACAAAGAGATTTGAATTATAGAAAGTAGTTTG
GGAAGGTTTCCCTTGACGGGGTCTGGGAACAAGTTCAAATTATAGAGAGA
TTTAAATAATAGAAGTTCGAATAAGCGAAAGTCTGCTGTAGATCAGTGTT
TTTACACTGCTTGTTTAAAAGCCGTCTAGTATGATAAATTACTATTACTA
CGAAGATAATTTTTTTACATTAGGTGACTATTGGAGAAACTATTCCTTCA
CCGCAGTCCTTCTCATCGCTTTTGCGGTACATTTACTACGGCGATGTTAC
ANTTCGTTGTCTATTTTCTGTTTGGATTTCTAGTTTTCTACTTAAGTTCT
TAATATTTCGACCAGTCATTAATAAAACCTTTTCACAGCCACAAGCATGA
TAAATTACTATTACTACGGAGATAATTTTTTTATATTAGGTGACTATTGG
AGAAACTATTCCTTCGCCGCAGTCCTTCTCATCGCTTTTGCGGTACATTT
ACTACGGCGATGTTACAATGCCACCTGAAGACTCATTGTATCTGTTCTCT
GCACCCTTCTATTATGGCTTCACTAATAGCAGACTCCAGGTATGTGTTAG
AAAAAACGAGCAATTTCTGACAAAGAGGTTTTTGAAGAAGGATTACGTTA
TTTTCAGGTGATTCGCTCACTTTTTCTGTGGAAATTGCACAAAAATACTC
AAAAAATGTAGCGAACATCGGTAAGCTCCAACAATCTTGGACGCTCTTAT
AAAAAAACGCACAAATTGAGTATGGGTGCCTTAAATAAACTACACGTTTT
TTTGTTTTTTTTTTAATAGACACACTTTTTAGAAACATGAGGCTCAGAAT
GCCTAAAAACTAAGAAACATCTAGTAACATGCGTAGTCGTGTTTTATAAT
AACAATTTTACAAGGACATAGGCACAGTTTCGGCAAACTCGAGAGTGCAA
ATTAAAAACAATCACACTCTCAAATTTCAGAAACAGCTAAAAGAAAGCAG
ATTTTTAGACCAATAAGTAAACAAAGTAAGCATAATTAAGCAAAAAATCA
CAAAAAACAGCCGGGCATCAACCAAAATTTAATAGTTTCTTATAAAAAAG
TTTGTTTTGAATTAATTTTGACTTTATTTCTAAATTTTTCATTTTTAGGC
ATTTTGTAAACAAAACTTAGAAATGAATGTCACAAACCAAAATGTCATCC
ATGTAAGTCATCCAAAGCTCTTCTTAATTCACCCCTGTATCAGTGACCCG
GTCAGATCCGCCCCTGTGCATAATATGGTGAAAAAAGGCCAGAAAATCGC
CTAATTTTTAACTCTGGTAGGATATTTTGTAACCCCGGTCAAAATCGAAA
AATAGTAAAGTCTAGGAAAAACAGACTCCGCTAATACTTGAAAGTGAACT
TTTTCCCTACCCCGGTGGAAATTAGTTAAAGGTTTCCAAAGCAGTAGAGA
TTGTGAGATCCGGTGAAATCATAGCCACCCCGGTGGATTTCAAAAAAACT
TCACTGAGAAAGGGGTGGTCCTTATACCAACTCGTAGTTACTCATTACAA
TTTTCTTTTTACCTTCAGATACTCGAGGCATCGCATGGTATCGGTGCCGT
AGACATGAAGCGGCATGCGCTAAGTATTATCGTTCAACAGTTTCATAAGG
TCGCTCGTCTGTCGGACATTAGACGCTTAAAGAAAGAACTTTTACNTTCA
TAAGGTCGCTCGACTGTCGGACATTAGGCGCTTAAAGAAAGAACTTTTAC
TTGATATATTAGATGCTGTAGCTGAGTTCATGACTCCACCTCCCAGTACC
ACGGAAGAAGTTGTACCGGCATTTTCTTCTGAAAGTTGAGAACTATAGAT
TGTTGCCCTTTTGAACTTATGCTGAGGATTGTGGTGCTGTGATTTATCAT
GGACTCTTATTTGGGCTCCAAGTTTTACTTGTGTTTTGCAAGCTAATTGG
GCTATTCCAGAAAACACTTTTACCCCAGAGGAGGTTTTTTTAGGGAAAGG
TGACCCCTGGATTTTTTTTCAGGACCCCCTTGGATTTTTTTCTGATTTTT
TTTAACCACCCTGGATTTTCGACCTCGTTTTACTGACCACCCTGGATTTT
CCAACTTATTTCACTTACCACCCTGGATTTTTGCACTCGAAAAATCACAC
CCTCTGGATTATTTTATTTTCGAGGCCACACTGGACGTCACACCTCCTCA
ACATAGGGGGCACAGACTATTTCTGGAATAGCCAGATTCTTCCCAGCTTT
TCCCTGGAAATGAATTCTTTCAGTTTAAAATGTTCTTAAAAACTTCGCCA
CTGACAAAACCAATTGTGAAATTGTACAGAAACAAGAAGAAAAGCAACAA
AATTGCTGAAAAATCTGGTAAAAGCTTGATATATGGAAAGACTCTTATTT
TGGGCTTTGAGACAATGAGAGCTTAGCTGGGTTTTGTTTCAAAGAAACTG
ATCAAACCCAGAGACAGGCTTACCCAGAAACAAACCAATGGTTATATTTA
AAGGAAAATGGTAAAGTTATCATTGTATCAGGAGTTGGGTTTGCCGAGCA
GTGGAATAAATGTATTTTATTCTGAAGTGGTAGAACATATTTCAATACAG
TTTGTCCGGTTCAGCAGAACAGAATTTCTATAAAGTAAAAAGTTCTCATA
CTTTGCATTGCTTTTTATGACCTAAATATTCGATAATTTTATTACGTTTG
GGAATCGGATAATCTATTGAATGAGAAAAGACATTCAGTCCTTTTGCAAA
TTCCAGTTTTAAAATTTTAATACCTGCTTCGCTTTTTTTCCGAACATACT
GTAGATTTGTAAGAGTTTATGATACACGCCCTTTTTACAGACCCGGTGGG
ACTCCAAAAATTGGCCAAAATATTGTCTCAGTTGAAAATTATTCTCAAGC
TTTTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025104XLOC_025104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041089-exon-sc0002700-1575043694:14200..14271TCONS_00041089-exon-sc0002700-1575043694:14200..14271Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1575043694:13519..13541TCONS_00041089-exon-sc0002700-1575043694:13519..13541Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1575043694:12520..12571TCONS_00041089-exon-sc0002700-1575043694:12520..12571Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1575043694:11533..11682TCONS_00041089-exon-sc0002700-1575043694:11533..11682Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1575043694:10920..10973TCONS_00041089-exon-sc0002700-1575043694:10920..10973Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1575043694:10473..10553TCONS_00041089-exon-sc0002700-1575043694:10473..10553Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1575043694:9214..10399TCONS_00041089-exon-sc0002700-1575043694:9214..10399Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:14200..14271TCONS_00041089-exon-sc0002700-1510915933:14200..14271Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:13519..13541TCONS_00041089-exon-sc0002700-1510915933:13519..13541Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:12520..12571TCONS_00041089-exon-sc0002700-1510915933:12520..12571Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:11533..11682TCONS_00041089-exon-sc0002700-1510915933:11533..11682Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:10920..10973TCONS_00041089-exon-sc0002700-1510915933:10920..10973Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:10473..10553TCONS_00041089-exon-sc0002700-1510915933:10473..10553Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1510915933:9214..10399TCONS_00041089-exon-sc0002700-1510915933:9214..10399Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:14200..14271TCONS_00041089-exon-sc0002700-1491911889:14200..14271Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:13519..13541TCONS_00041089-exon-sc0002700-1491911889:13519..13541Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:12520..12571TCONS_00041089-exon-sc0002700-1491911889:12520..12571Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:11533..11682TCONS_00041089-exon-sc0002700-1491911889:11533..11682Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:10920..10973TCONS_00041089-exon-sc0002700-1491911889:10920..10973Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:10473..10553TCONS_00041089-exon-sc0002700-1491911889:10473..10553Clytia hemisphaericaexon
TCONS_00041089-exon-sc0002700-1491911889:9214..10399TCONS_00041089-exon-sc0002700-1491911889:9214..10399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002700supercontigsc0002700:9214..14271 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.30257	0.555635	4.61071	2.97604	3.29532	4.24664	4.01933	2.08024	3.15687	2.45884	0	0	0	0	0	0	0	0	0	0	5.10392	6.97905	0	0	0	0
Blast
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BLAST of TCONS_00041089 vs. Swiss-Prot (Human)
Match: LZTR1 (Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens GN=LZTR1 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 3.204e-57
Identity = 101/163 (61.96%), Postives = 126/163 (77.30%), Query Frame = 1 
Query:   13 GKKWSDFKLVLNGEAFETHKIVLAARSSYFEAMFRSFSPPDNQANVTIGETIPSPQSFSSLLRYIYYGDVTMPPEDSLYLFSAPFYYGFTNSRLQAFCKQNLEMNVTNQNVIHILEASHGIGAVDMKRHALSIIVQQFHKIRRL------KKELLLDILDAVA 483
            G ++ D  L+L+G     HK +LAARSSYFEAMFRSF P D Q N++IGE +PS Q+F S+LRYIYYG+V MPPEDSLYLF+AP+YYGF N+RLQA+CKQNLEMNVT QNV+ ILEA+    A+DMKRH L IIV QF K+ +L       ++LLLDI+D++A
Sbjct:  663 GAEFCDITLLLDGHPRPAHKAILAARSSYFEAMFRSFMPEDGQVNISIGEMVPSRQAFESMLRYIYYGEVNMPPEDSLYLFAAPYYYGFYNNRLQAYCKQNLEMNVTVQNVLQILEAADKTQALDMKRHCLHIIVHQFTKVSKLPTLRSLSQQLLLDIIDSLA 825
The following BLAST results are available for this feature:
BLAST of TCONS_00041089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LZTR13.204e-5761.96Leucine-zipper-like transcriptional regulator 1 OS... [more]
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