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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041088 ID=TCONS_00041088|Name=TCONS_00041088|organism=Clytia hemisphaerica|type=transcript|length=694bp
aaaaaatttaaacactGACTCGACTTTCTTGGTAGAGACTATGGAAACCA
GAATAAAACAACTTACCAAAAAAGACTGGAGCACAATGAGTATCAAGGTC
TGCGTACTCATAATCGGTGATCGGAATCAATGGTCGGATTATCGGGATTT
CAAATCGGATTTACAGCAACATGTTCGCGGTCGTATAAACATTGAGGATG
TTCTTGATATCGCTGGTATCCATGGCAACAACCAATCAAAAGCTATTGGT
GACTATCTGACCAATCGTGACGCAGTTATTCTTGTTTGCTCTAAAAAATT
ACGTCAATGTATAGAAGACCGTCGTTCAGAAGAATTTAAACTAAAAGGAC
GCTCTATAAAACTGGATGGTGGTGTATTGAAGGATCATTTGAATGTAGAA
AGTATAAAGAATAAGACAATTTTAGTTTCATTAGATTCGGAGGACGATTC
CGTTGATATAGTGCCCGCATTCCTTACGGACAGGCCCCATTTTAATGCCG
AAGATGATAATATTAACGATCAAATTATGAGCTGTTTATTAGCGGAATAA
ATAATATGGATATATTTTGTGATATttggcgagaccaatttaattagTTG
TTATACGGGCCCGATCGAACCTGaaactctaaaaataaaaataaaataga
ttttggAAGTACATTTTTATTTCCATTGCTTTACAGAatcccaa Run BLAST on NCBI protein sequence of TCONS_00041088-protein >TCONS_00041088-protein ID=TCONS_00041088-protein|Name=TCONS_00041088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
KNLNTDSTFLVETMETRIKQLTKKDWSTMSIKVCVLIIGDRNQWSDYRDF
KSDLQQHVRGRINIEDVLDIAGIHGNNQSKAIGDYLTNRDAVILVCSKKL
RQCIEDRRSEEFKLKGRSIKLDGGVLKDHLNVESIKNKTILVSLDSEDDS
VDIVPAFLTDRPHFNAEDDNINDQIMSCLLAE Run BLAST on NCBI transcript from alignment at sc0002700:7500..8469+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041088 ID=TCONS_00041088|Name=TCONS_00041088|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at sc0002700:7500..8469+ (Clytia hemisphaerica)
aaaaaatttaaacactGACTCGACTTTCTTGGTAGAGACTATGGTACATA
CTTTTCTTTGAACGATATGAAGTGGGAGTAGGATTTGAGAGTTAACAATT
AAGGAGTGGGGGAGTGTGTTACCATAGGTAAATGTTTCAGGCCTCTAAAA
GAGAGATAATCCGGGAACTTTCGCCATTAAATAGACAAAAGCAATCGTCA
TAATGATTTTTAAATCACATTGCCCCCCAAAGAGGTCCTATTCTTGGGAG
AAACGTATCTGTAACGTACGTTTCCTGGTGTAGACTAAGACTTACAAAAC
TCTATATTTGCATTTATAGGAAACCAGAATAAAACAACTTACCAAAAAAG
ACTGGAGCACAATGAGTATCAAGGTCTGCGTACTCATAATCGGTGATCGG
AATCAATGGTCGGATTATCGGGATTTCAAATCGGATTTACAGCAACATGT
TCGCGGTCGTATAAACATTGAGGATGTTCTTGATATCGCTGGTATCCATG
GCAACAACCAATCAAAAGCTATTGGTGACTATCTGACCAATCGTGACGCA
GTTATTCTTGTTTGCTCTAAAAAATTACGTCAATGTATAGAAGACCGTCG
TTCAGAAGAATTTAAACTAAAAGGACGCTCTATAAAACTGGATGGTGGTG
TATTGAAGGATCATTTGAATGTAGAAAGTATAAAGAATAAGACAATTTTA
GTTTCATTAGATTCGGAGGACGATTCCGTTGATATAGTGCCCGCATTCCT
TACGGACAGGCCCCATTTTAATGCCGAAGATGATAATATTAACGATCAAA
TTATGAGCTGTTTATTAGCGGAATAAATAATATGGATATATTTTGTGATA
TttggcgagaccaatttaattagTTGTTATACGGGCCCGATCGAACCTGa
aactctaaaaataaaaataaaatagattttggAAGTACATTTTTATTTCC
ATTGCTTTACAGAatcccaa Coding sequence (CDS) from alignment at sc0002700:7500..8469+ >TCONS_00041088 ID=TCONS_00041088|Name=TCONS_00041088|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0002700:7500..8469+ (Clytia hemisphaerica)
aaaaatttaaacactGACTCGACTTTCTTGGTAGAGACTATGGAAACCAG
AATAAAACAACTTACCAAAAAAGACTGGAGCACAATGAGTATCAAGGTCT
GCGTACTCATAATCGGTGATCGGAATCAATGGTCGGATTATCGGGATTTC
AAATCGGATTTACAGCAACATGTTCGCGGTCGTATAAACATTGAGGATGT
TCTTGATATCGCTGGTATCCATGGCAACAACCAATCAAAAGCTATTGGTG
ACTATCTGACCAATCGTGACGCAGTTATTCTTGTTTGCTCTAAAAAATTA
CGTCAATGTATAGAAGACCGTCGTTCAGAAGAATTTAAACTAAAAGGACG
CTCTATAAAACTGGATGGTGGTGTATTGAAGGATCATTTGAATGTAGAAA
GTATAAAGAATAAGACAATTTTAGTTTCATTAGATTCGGAGGACGATTCC
GTTGATATAGTGCCCGCATTCCTTACGGACAGGCCCCATTTTAATGCCGA
AGATGATAATATTAACGATCAAATTATGAGCTGTTTATTAGCGGAATAAa
aaaatttaaacactGACTCGACTTTCTTGGTAGAGACTATGGAAACCAGA
ATAAAACAACTTACCAAAAAAGACTGGAGCACAATGAGTATCAAGGTCTG
CGTACTCATAATCGGTGATCGGAATCAATGGTCGGATTATCGGGATTTCA
AATCGGATTTACAGCAACATGTTCGCGGTCGTATAAACATTGAGGATGTT
CTTGATATCGCTGGTATCCATGGCAACAACCAATCAAAAGCTATTGGTGA
CTATCTGACCAATCGTGACGCAGTTATTCTTGTTTGCTCTAAAAAATTAC
GTCAATGTATAGAAGACCGTCGTTCAGAAGAATTTAAACTAAAAGGACGC
TCTATAAAACTGGATGGTGGTGTATTGAAGGATCATTTGAATGTAGAAAG
TATAAAGAATAAGACAATTTTAGTTTCATTAGATTCGGAGGACGATTCCG
TTGATATAGTGCCCGCATTCCTTACGGACAGGCCCCATTTTAATGCCGAA
GATGATAATATTAACGATCAAATTATGAGCTGTTTATTAGCGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041088-exon-sc0002700-1491911889:7500..7542 | TCONS_00041088-exon-sc0002700-1491911889:7500..7542 | Clytia hemisphaerica | exon |
| TCONS_00041088-exon-sc0002700-1510915933:7500..7542 | TCONS_00041088-exon-sc0002700-1510915933:7500..7542 | Clytia hemisphaerica | exon |
| TCONS_00041088-exon-sc0002700-1575043694:7500..7542 | TCONS_00041088-exon-sc0002700-1575043694:7500..7542 | Clytia hemisphaerica | exon |
| TCONS_00041088-exon-sc0002700-1491911889:7819..8469 | TCONS_00041088-exon-sc0002700-1491911889:7819..8469 | Clytia hemisphaerica | exon |
| TCONS_00041088-exon-sc0002700-1510915933:7819..8469 | TCONS_00041088-exon-sc0002700-1510915933:7819..8469 | Clytia hemisphaerica | exon |
| TCONS_00041088-exon-sc0002700-1575043694:7819..8469 | TCONS_00041088-exon-sc0002700-1575043694:7819..8469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002700 | supercontig | sc0002700:7500..8469 + |
Blast
The following BLAST results are available for this feature:
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