|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041087 ID=TCONS_00041087|Name=TCONS_00041087|organism=Clytia hemisphaerica|type=transcript|length=770bp
TTGACTTTGAAGCAGAGAAAGTtgaacattttttgtgaaaaatattttgt
gctTTTTGGAGATATGTTAGAAGAATTTTGAACATCAAGATTTGGTcgct
tttgcttaaaaaaggaAAGGAAACCAGAATAAAACAACTTACCAAAAAAG
ACTGGAGCACAATGAGTATCAAGGTCTGCGTACTCATAATCGGTGATCGG
AATCAATGGTCGGATTATCGGGATTTCAAATCGGATTTACAGCAACATGT
TCGCGGTCGTATAAACATTGAGGATGTTCTTGATATCGCTGGTATCCATG
GCAACAACCAATCAAAAGCTATTGGTGACTATCTGACCAATCGTGACGCA
GTTATTCTTGTTTGCTCTAAAAAATTACGTCAATGTATAGAAGACCGTCG
TTCAGAAGAATTTAAACTAAAAGGACGCTCTATAAAACTGGATGGTGGTG
TATTGAAGGATCATTTGAATGTAGAAAGTATAAAGAATAAGACAATTTTA
GTTTCATTAGATTCGGAGGACGATTCCGTTGATATAGTGCCCGCATTCCT
TACGGACAGGCCCCATTTTAATGCCGAAGATGATAATATTAACGATCAAA
TTATGAGCTGTTTATTAGCGGAATAAATAATATGGATATATTTTGTGATA
TttggcgagaccaatttaattagTTGTTATACGGGCCCGATCGAACCTGa
aactctaaaaataaaaataaaatagattttggAAGTACATTTTTATTTCC
ATTGCTTTACAGAatcccaa Run BLAST on NCBI transcript from alignment at sc0002700:6336..8469+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041087 ID=TCONS_00041087|Name=TCONS_00041087|organism=Clytia hemisphaerica|type=transcript|length=2134bp|location=Sequence derived from alignment at sc0002700:6336..8469+ (Clytia hemisphaerica)
TTGACTTTGAAGCAGAGAAAGTtgaacattttttgtgaaaaatattttgt
gctTTTTGGAGATATGTTAGAAGAATTTTGAACATCAAGATTTGGTcgct
tttgcttaaaaaaggaAAGGTAAGAAGTGTGCTATTTCTTTTATACCGTA
CATAATGGCCAAAAATAAAACTTCCTGATTTCAAACTGTTTGAACTTTCC
TAtacccggcggaacaaccgtaaaagtgggaaggctgaaggctcaaatgg
GATAAAATTCACTAGGAATTTGAGAGAAAATATCTCATTTTCTCAGAAGT
GGTAAGGCTAAAGTCTagccagtctccccgcttccgctgGGCCTGCTTCC
AAGGAAATTATATACTAGTAGTATATTTTATAGTTTACTACTGCATATCA
TTTCTCTGAACTTTCTAACATCCCAGAAAACATTTTTACACCCCTCCCTC
GGTGACCcgatgaaattttgaattaaagCCGGGGTggctttaaaaaaagt
aaaatttcaccTCAGTCACCGACATCCCACCGACATCTCAAAACTCACTG
GGTGAAGaatttgaatataattttcGCCGGGGTAGGACAAAATCAGAGGG
AAAAAATATTCCCAGAATTATATaaccaaaattttgtttttcttttcgat
TTTGACTGGGTTGACCTACTTAATACGAATTTTGACCGGGTAAAACCATA
AATTTCCCAGTTTTGCTCagagcaaaaaaattcaactaaTTTTTACCGGA
TTTACTCATTATCCAACTGGTGCTTAAAATTAGGTCCTTTTAGCCAATAT
CTTTTCACCGGGTTATCCACCGGAGCGGATCTGACtgggtcactgataca
ggggtggtttttttttcgaaatagtcCCGTAGTCTAGGGGGAACTGGCTT
TGTGAAGTGACGAGTGTTATGGGTGCCAAATTCACCCTCGTAGGAAAAGA
ATTGCCATTTTGGGACTCATCAGAGAGATTCCTTTGAGGAAAAAAACTTT
CGTAAACCTTCCATTACAAACTCTCCAGTATGTCCTCCATATTTATCTTG
AGTGAGATGACGTCATCCCGAAAGTTGACTTAACGATATCACACAGGGTC
TCGaattacaaaaacttttttgagaaaaaaacaacatttttataaagtgA
GAGATGGatgattcaaaaaatttaaacactGACTCGACTTTCTTGGTAGA
GACTATGGTACATACTTTTCTTTGAACGATATGAAGTGGGAGTAGGATTT
GAGAGTTAACAATTAAGGAGTGGGGGAGTGTGTTACCATAGGTAAATGTT
TCAGGCCTCTAAAAGAGAGATAATCCGGGAACTTTCGCCATTAAATAGAC
AAAAGCAATCGTCATAATGATTTTTAAATCACATTGCCCCCCAAAGAGGT
CCTATTCTTGGGAGAAACGTATCTGTAACGTACGTTTCCTGGTGTAGACT
AAGACTTACAAAACTCTATATTTGCATTTATAGGAAACCAGAATAAAACA
ACTTACCAAAAAAGACTGGAGCACAATGAGTATCAAGGTCTGCGTACTCA
TAATCGGTGATCGGAATCAATGGTCGGATTATCGGGATTTCAAATCGGAT
TTACAGCAACATGTTCGCGGTCGTATAAACATTGAGGATGTTCTTGATAT
CGCTGGTATCCATGGCAACAACCAATCAAAAGCTATTGGTGACTATCTGA
CCAATCGTGACGCAGTTATTCTTGTTTGCTCTAAAAAATTACGTCAATGT
ATAGAAGACCGTCGTTCAGAAGAATTTAAACTAAAAGGACGCTCTATAAA
ACTGGATGGTGGTGTATTGAAGGATCATTTGAATGTAGAAAGTATAAAGA
ATAAGACAATTTTAGTTTCATTAGATTCGGAGGACGATTCCGTTGATATA
GTGCCCGCATTCCTTACGGACAGGCCCCATTTTAATGCCGAAGATGATAA
TATTAACGATCAAATTATGAGCTGTTTATTAGCGGAATAAATAATATGGA
TATATTTTGTGATATttggcgagaccaatttaattagTTGTTATACGGGC
CCGATCGAACCTGaaactctaaaaataaaaataaaatagattttggAAGT
ACATTTTTATTTCCATTGCTTTACAGAatcccaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041087-exon-sc0002700-1491911889:6336..6454 | TCONS_00041087-exon-sc0002700-1491911889:6336..6454 | Clytia hemisphaerica | exon |
| TCONS_00041087-exon-sc0002700-1510915933:6336..6454 | TCONS_00041087-exon-sc0002700-1510915933:6336..6454 | Clytia hemisphaerica | exon |
| TCONS_00041087-exon-sc0002700-1575043694:6336..6454 | TCONS_00041087-exon-sc0002700-1575043694:6336..6454 | Clytia hemisphaerica | exon |
| TCONS_00041087-exon-sc0002700-1491911889:7819..8469 | TCONS_00041087-exon-sc0002700-1491911889:7819..8469 | Clytia hemisphaerica | exon |
| TCONS_00041087-exon-sc0002700-1510915933:7819..8469 | TCONS_00041087-exon-sc0002700-1510915933:7819..8469 | Clytia hemisphaerica | exon |
| TCONS_00041087-exon-sc0002700-1575043694:7819..8469 | TCONS_00041087-exon-sc0002700-1575043694:7819..8469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002700 | supercontig | sc0002700:6336..8469 + |
Blast
The following BLAST results are available for this feature:
|
