TCONS_00041085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041085
Unique NameTCONS_00041085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041085 ID=TCONS_00041085|Name=TCONS_00041085|organism=Clytia hemisphaerica|type=transcript|length=250bp
TAGATTATCTTCAACTCGGAAAGGAGTATTTGGAACGACAGCAGATCGTT
TGGCACCATTAGATTGTAAAGATGATCATCCAGGTCCTGGAGAATACGAG
GTCAAATCGAACATTCAACAATCGATTGGTCATAAGAAACATGCGGTATT
CGAATCGGGTACCAATCGATTAGGTCATCCTAATTACCCTAATgaTGCAC
CACCGCCTGGCTCATACGAAGTCGCAAAATCGTTTGACAAAACTCAAGGT
Run BLAST on NCBI

transcript from alignment at sc0002699:10322..12190+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041085 ID=TCONS_00041085|Name=TCONS_00041085|organism=Clytia hemisphaerica|type=transcript|length=1869bp|location=Sequence derived from alignment at sc0002699:10322..12190+ (Clytia hemisphaerica)
TAGATTATCTTCAACTCGGAAAGGAGTATTTGGAACGACAGCAGATCGTT
TGGCACCATTAGATTGTAAAGATGATCATCCAGGTATCAACTCTATATGA
TGACAGCTACATCGAATAACGGCAAAATAACCAAAATCCTCGATATTTTG
AACTTCATTGTGGTCTTAGCTGACGCTACGGAACCTTTCTATTCTGCAGG
CTGACCCGAAAGCAAAGTAGACCTGACTTACCCTGCAAAGAAATAAACTT
TTCTTCTCATGTGAAAAAAAACCATTTCATGATATCTATAGATACTTATT
CTCGCTTAATATCGAGTGTAAATTAGTTTGAAAATGCATTAAACACCTAT
CAAAAAAGTCTAGCATCGAGATCTGTAAAGACTGTATGAAAGGTCTTCAG
GCTTAAATTTTCCAACATTCCAACATCGAATGGTATCGAATCTCGGACAT
CTCGGGCTTCAGACACACATAGTTCAGAGTCTACTTTTAACTGAAATTTT
CGAGTTTAAAACCAAGTCATCTATTATGTAATCGCtggaaaaaaaactaa
tttattGTTCATTATTCTCCTTAACTGACGTATGTTAGCTCGGTCagctt
tttgtattttgtattttgcCTCGCAATATACATGTGTGTTTTTTATCCCC
GATTACTGCAAACTCGCCCAATGAGTAGCTTACCTAAAGAGGTAACTTTA
NTTTTTATCCCCGATTACTGCAAACTCGCCCAATGAGTAGCTTACCTAAA
GAGGTAACTTTATCAATtactaaaaataatgaaaacggTAGGTAATTTGA
AACTCTGAGTATGTGTGGCTATAAAAAGAATGTAACGCCGGACTCCTCAA
ACAGCCAAGACTTAATACCTATCTTTTACTACATTGTACCAAGAATGATA
GACAAAATTTCATCTTCGAGATgattgaagattttcttttaataataTGT
TTTATATATACGCACTTTTCATGCTGACGAAGTAGAATTAACAAAAAgag
tttctcaaaatttgtgctAGTGCGTCGCGGGAGGAGGATAAAGTTgttct
ttcaatttttaaggtgttttaagttgcaaaaatttcttcccatttttttc
ctaaaattttgcCCCTCCCCCTCACTTCAAACGGCTCGCTGGGGACCATG
GATAGGAGATACGTTAAATGATGATGTCCTTTAAAGATCGTTTTTATTAC
TAGTAAAATATGTCACTTATAGGTCCTGGAGAATACGAGGTCAAATCGAA
CATTCAACAATCGATTGGTCATAAGAAACATGCGGTATTCGAATCGGGTA
CCAATCGATTAGGTCATCCTAATTACCCTAATGTAAGTATCGTTTCTCTC
GTTGAANTGGTCATAAGAAACATGCGGTATTCGAATCGGGTACCAATCGA
TTAGGTCATCCTAATTACCCTAATGTAAGTATCGTTTCTCTCGTTGAAGt
cgttgaaaatttttgatccagTCAGACGAAGAAGGAGTCAAATAACCATG
AAGATGGAAGAATCTATCTGCTCCTTTTTAGAGCTGAAGTGAAGAAATTT
GGTGTTAATTTCCGATGAGAAGGTTGAAGAGAATAAGAATAAGCACGATG
CTGGTGATTTTCTTGGAGGGAGGGTGGTTCCTAGGATCTTCCTTTGGTGA
TGGGGACCTTTTTTTCAGGCGATCTTCCAGGAAGATGATCTATCAGATTT
TTATGTATattttcaggttggtgggaagTATTGTAATTGTATTGTATTTG
AGTAAGACACGCTCCATGTTTATCTGATTTTCTTCTgattatgtttttct
tttgaattttaggaTGCACCACCGCCTGGCTCATACGAAGTCGCAAAATC
GTTTGACAAAACTCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025101XLOC_025101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041085-exon-sc0002699-1491911889:10322..10404TCONS_00041085-exon-sc0002699-1491911889:10322..10404Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1510915933:10322..10404TCONS_00041085-exon-sc0002699-1510915933:10322..10404Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1575043694:10322..10404TCONS_00041085-exon-sc0002699-1575043694:10322..10404Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1491911889:11544..11600TCONS_00041085-exon-sc0002699-1491911889:11544..11600Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1510915933:11544..11600TCONS_00041085-exon-sc0002699-1510915933:11544..11600Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1575043694:11544..11600TCONS_00041085-exon-sc0002699-1575043694:11544..11600Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1491911889:11693..11745TCONS_00041085-exon-sc0002699-1491911889:11693..11745Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1510915933:11693..11745TCONS_00041085-exon-sc0002699-1510915933:11693..11745Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1575043694:11693..11745TCONS_00041085-exon-sc0002699-1575043694:11693..11745Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1491911889:12134..12190TCONS_00041085-exon-sc0002699-1491911889:12134..12190Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1510915933:12134..12190TCONS_00041085-exon-sc0002699-1510915933:12134..12190Clytia hemisphaericaexon
TCONS_00041085-exon-sc0002699-1575043694:12134..12190TCONS_00041085-exon-sc0002699-1575043694:12134..12190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002699supercontigsc0002699:10322..12190 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5547	0	8.26	6.41009	0	0	0.0837495	14.8523	34.5123	27.0256	17.6381	12.1052	2.30255	0.546554	0	4.44549	0	5.91765	6.51943	3.87867	0	0	7.51388	4.82051	0	0	4.81503	9.08328	0.0823302	6.09635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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