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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041084 ID=TCONS_00041084|Name=TCONS_00041084|organism=Clytia hemisphaerica|type=transcript|length=286bp
GCGAAACAATTTGCTATTCTATCCTTCATTTTGTTGTAGATTATCTTCAA
CTCGGAAAGGAGTATTTGGAACGACAGCAGATCGTTTGGCACCATTAGAT
TGTAAAGATGATCATCCAGGTCCTGGAGAATACGAGGTCAAATCGAACAT
TCAACAATCGATTGGTCATAAGAAACATGCGGTATTCGAATCGGGTACCA
ATCGATTAGGTCATCCTAATTACCCTAATgaTGCACCACCGCCTGGCTCA
TACGAAGTCGCAAAATCGTTTGACAAAACTCAAGGT Run BLAST on NCBI transcript from alignment at sc0002699:10286..12190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041084 ID=TCONS_00041084|Name=TCONS_00041084|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at sc0002699:10286..12190+ (Clytia hemisphaerica)
GCGAAACAATTTGCTATTCTATCCTTCATTTTGTTGTAGATTATCTTCAA
CTCGGAAAGGAGTATTTGGAACGACAGCAGATCGTTTGGCACCATTAGAT
TGTAAAGATGATCATCCAGGTATCAACTCTATATGATGACAGCTACATCG
AATAACGGCAAAATAACCAAAATCCTCGATATTTTGAACTTCATTGTGGT
CTTAGCTGACGCTACGGAACCTTTCTATTCTGCAGGCTGACCCGAAAGCA
AAGTAGACCTGACTTACCCTGCAAAGAAATAAACTTTTCTTCTCATGTGA
AAAAAAACCATTTCATGATATCTATAGATACTTATTCTCGCTTAATATCG
AGTGTAAATTAGTTTGAAAATGCATTAAACACCTATCAAAAAAGTCTAGC
ATCGAGATCTGTAAAGACTGTATGAAAGGTCTTCAGGCTTAAATTTTCCA
ACATTCCAACATCGAATGGTATCGAATCTCGGACATCTCGGGCTTCAGAC
ACACATAGTTCAGAGTCTACTTTTAACTGAAATTTTCGAGTTTAAAACCA
AGTCATCTATTATGTAATCGCtggaaaaaaaactaatttattGTTCATTA
TTCTCCTTAACTGACGTATGTTAGCTCGGTCagctttttgtattttgtat
tttgcCTCGCAATATACATGTGTGTTTTTTATCCCCGATTACTGCAAACT
CGCCCAATGAGTAGCTTACCTAAAGAGGTAACTTTANTTTTTATCCCCGA
TTACTGCAAACTCGCCCAATGAGTAGCTTACCTAAAGAGGTAACTTTATC
AATtactaaaaataatgaaaacggTAGGTAATTTGAAACTCTGAGTATGT
GTGGCTATAAAAAGAATGTAACGCCGGACTCCTCAAACAGCCAAGACTTA
ATACCTATCTTTTACTACATTGTACCAAGAATGATAGACAAAATTTCATC
TTCGAGATgattgaagattttcttttaataataTGTTTTATATATACGCA
CTTTTCATGCTGACGAAGTAGAATTAACAAAAAgagtttctcaaaatttg
tgctAGTGCGTCGCGGGAGGAGGATAAAGTTgttctttcaatttttaagg
tgttttaagttgcaaaaatttcttcccatttttttcctaaaattttgcCC
CTCCCCCTCACTTCAAACGGCTCGCTGGGGACCATGGATAGGAGATACGT
TAAATGATGATGTCCTTTAAAGATCGTTTTTATTACTAGTAAAATATGTC
ACTTATAGGTCCTGGAGAATACGAGGTCAAATCGAACATTCAACAATCGA
TTGGTCATAAGAAACATGCGGTATTCGAATCGGGTACCAATCGATTAGGT
CATCCTAATTACCCTAATGTAAGTATCGTTTCTCTCGTTGAANTGGTCAT
AAGAAACATGCGGTATTCGAATCGGGTACCAATCGATTAGGTCATCCTAA
TTACCCTAATGTAAGTATCGTTTCTCTCGTTGAAGtcgttgaaaattttt
gatccagTCAGACGAAGAAGGAGTCAAATAACCATGAAGATGGAAGAATC
TATCTGCTCCTTTTTAGAGCTGAAGTGAAGAAATTTGGTGTTAATTTCCG
ATGAGAAGGTTGAAGAGAATAAGAATAAGCACGATGCTGGTGATTTTCTT
GGAGGGAGGGTGGTTCCTAGGATCTTCCTTTGGTGATGGGGACCTTTTTT
TCAGGCGATCTTCCAGGAAGATGATCTATCAGATTTTTATGTATattttc
aggttggtgggaagTATTGTAATTGTATTGTATTTGAGTAAGACACGCTC
CATGTTTATCTGATTTTCTTCTgattatgtttttcttttgaattttagga
TGCACCACCGCCTGGCTCATACGAAGTCGCAAAATCGTTTGACAAAACTC
AAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041084-exon-sc0002699-1491911889:10286..10404 | TCONS_00041084-exon-sc0002699-1491911889:10286..10404 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1510915933:10286..10404 | TCONS_00041084-exon-sc0002699-1510915933:10286..10404 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1575043694:10286..10404 | TCONS_00041084-exon-sc0002699-1575043694:10286..10404 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1491911889:11544..11653 | TCONS_00041084-exon-sc0002699-1491911889:11544..11653 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1510915933:11544..11653 | TCONS_00041084-exon-sc0002699-1510915933:11544..11653 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1575043694:11544..11653 | TCONS_00041084-exon-sc0002699-1575043694:11544..11653 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1491911889:12134..12190 | TCONS_00041084-exon-sc0002699-1491911889:12134..12190 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1510915933:12134..12190 | TCONS_00041084-exon-sc0002699-1510915933:12134..12190 | Clytia hemisphaerica | exon |
| TCONS_00041084-exon-sc0002699-1575043694:12134..12190 | TCONS_00041084-exon-sc0002699-1575043694:12134..12190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002699 | supercontig | sc0002699:10286..12190 + |
Blast
The following BLAST results are available for this feature:
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