TCONS_00041082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041082
Unique NameTCONS_00041082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041082 ID=TCONS_00041082|Name=TCONS_00041082|organism=Clytia hemisphaerica|type=transcript|length=388bp
NNGAATCCTAACTTAATTAAACTCggtttaaaaaatgctgaccaAAAGTA
GCATAAAGCCCTTTCGAAAAATTCCTCGTAAATTGTCATAAGTACATTGA
CTTAAAGTGATAATCGTAATATCCATAATCAAAAGAACAAATGAATAAGG
TGGACTAAAGTCACAGTTCAAACAACTCAATATCGATCATTGGAATTCCA
CCAGAATCTCTACGATAAAGAGGGATATTACGACTatccaaaattttatc
aaacaaaaagaaactgCTAAAACCAAACACGCCCTACTAAAGAAATccca
aaaaataaagataaaacgaGACTTCACCGATGAAAATTGACGTATTTACA
AAACTCCATGGTGAAATTCAAAGGACGTCATTAGCTTN
Run BLAST on NCBI

transcript from alignment at sc0002696:9110..9497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041082 ID=TCONS_00041082|Name=TCONS_00041082|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0002696:9110..9497 (Clytia hemisphaerica)
NAAGCTAATGACGTCCTTTGAATTTCACCATGGAGTTTTGTAAATACGTC
AATTTTCATCGGTGAAGTCtcgttttatctttattttttgggATTTCTTT
AGTAGGGCGTGTTTGGTTTTAGcagtttctttttgtttgataaaattttg
gatAGTCGTAATATCCCTCTTTATCGTAGAGATTCTGGTGGAATTCCAAT
GATCGATATTGAGTTGTTTGAACTGTGACTTTAGTCCACCTTATTCATTT
GTTCTTTTGATTATGGATATTACGATTATCACTTTAAGTCAATGTACTTA
TGACAATTTACGAGGAATTTTTCGAAAGGGCTTTATGCTACTTTtggtca
gcattttttaaaccGAGTTTAATTAAGTTAGGATTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025099XLOC_025099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041082-exon-sc0002696-1491911889:9110..9497TCONS_00041082-exon-sc0002696-1491911889:9110..9497Clytia hemisphaericaexon
TCONS_00041082-exon-sc0002696-1510915933:9110..9497TCONS_00041082-exon-sc0002696-1510915933:9110..9497Clytia hemisphaericaexon
TCONS_00041082-exon-sc0002696-1575043694:9110..9497TCONS_00041082-exon-sc0002696-1575043694:9110..9497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002696supercontigsc0002696:9110..9497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.270421	0.536395	0	104.047	42.76	47.4662	49.1742	9.54129	6.42212	2.37646	3.56404	0.998887	0.465905	0	0.120777	1.00687	1.02314	0	0.440945	0.691024	1.0413	0.227252	0.267602	0.212798	1.98583	0.543542	1.16017	0.27904	0.224131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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