TCONS_00041080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041080
Unique NameTCONS_00041080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041080 ID=TCONS_00041080|Name=TCONS_00041080|organism=Clytia hemisphaerica|type=transcript|length=494bp
ACTATTATGGAAATAAAGAAAGATGCCAAAACGACATCATTGGCTCGCAA
TATCTTGGttggaaaaagaaatttggtTGTATCGATATTTTCAGTTCCTT
GATGAGAATTATACAAATTACTAGCTAATTATCAAATTACTAGCTAATGT
TATTGACTGAAGACAATGTAAAAATCGACAAGATTACTGAGATGACGTAG
TGAACCACCGACTTACAGAGAAAGCTGTgcttgaaaattacaaaaaatcc
AGATGAACTGACTGACAAACACAATGGAAAATGGAAGTTATGTCAGTTGC
TGAACGATCAAACGATACTGAACTACAGGAGCTATTCATGGATTCATCTT
TTCCTAAATGTTCTCTGTGGATGTCGTTAGAAATTTTAAATCTATGTAAA
CACGTAAAACACGTAAATGGTTGGGATATATTTTCTGGACATGTATTAAA
ATTGCTCAAGTACTGTATTTGTTactttattttaataaaatcgt
Run BLAST on NCBI

transcript from alignment at sc0002696:6584..7077

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041080 ID=TCONS_00041080|Name=TCONS_00041080|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0002696:6584..7077 (Clytia hemisphaerica)
acgattttattaaaataaagtAACAAATACAGTACTTGAGCAATTTTAAT
ACATGTCCAGAAAATATATCCCAACCATTTACGTGTTTTACGTGTTTACA
TAGATTTAAAATTTCTAACGACATCCACAGAGAACATTTAGGAAAAGATG
AATCCATGAATAGCTCCTGTAGTTCAGTATCGTTTGATCGTTCAGCAACT
GACATAACTTCCATTTTCCATTGTGTTTGTCAGTCAGTTCATCTggattt
tttgtaattttcaagcACAGCTTTCTCTGTAAGTCGGTGGTTCACTACGT
CATCTCAGTAATCTTGTCGATTTTTACATTGTCTTCAGTCAATAACATTA
GCTAGTAATTTGATAATTAGCTAGTAATTTGTATAATTCTCATCAAGGAA
CTGAAAATATCGATACAaccaaatttctttttccaaCCAAGATATTGCGA
GCCAATGATGTCGTTTTGGCATCTTTCTTTATTTCCATAATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025097XLOC_025097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041080-exon-sc0002696-1491911889:6584..7077TCONS_00041080-exon-sc0002696-1491911889:6584..7077Clytia hemisphaericaexon
TCONS_00041080-exon-sc0002696-1510915933:6584..7077TCONS_00041080-exon-sc0002696-1510915933:6584..7077Clytia hemisphaericaexon
TCONS_00041080-exon-sc0002696-1575043694:6584..7077TCONS_00041080-exon-sc0002696-1575043694:6584..7077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002696supercontigsc0002696:6584..7077 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21404	0.155735	0	0	48.2675	33.2011	24.8281	29.5505	7.46512	7.69244	5.11799	4.78765	0.766559	0.193715	0.673072	0.21006	2.19505	1.55605	1.23817	1.92634	0.836635	0.783985	0	0.183815	0.133652	0.153639	0.607291	0.347121	0.452191	0.424607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top