TCONS_00041060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041060
Unique NameTCONS_00041060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041060 ID=TCONS_00041060|Name=TCONS_00041060|organism=Clytia hemisphaerica|type=transcript|length=377bp
CCTTGCTTTTGCAGGTCGCGATCGTGATCCCATATCGCAATCGTGAAAGT
CAACTCAGCATTTTCCTCAGACATTATCACCCGATATTCATACGGCAGAA
TTTACATTACCGTATTTTTGTGATCGATCAGgTGGACAAAGACCCTTTCA
ATCGTGGAAAGCTGATGAACGTTGGATACAACGAAGCGAAGAAATATTTC
CCGTATGATTGCGTGGTTTTCCATGATGTTGATCTTTTGTTGGAAGATGA
CCGACTGATGTACTCGTGCCAATCTTCACCACAACATCTTTCTGTCAGCC
TCGATAAATATAACTATAGGTTATTATACCAAGAACTATTTGGAGGGATC
GAGATGTTTACAAGAGACCATTTCGAA
Run BLAST on NCBI

protein sequence of TCONS_00041060-protein

>TCONS_00041060-protein ID=TCONS_00041060-protein|Name=TCONS_00041060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
LLLQVAIVIPYRNRESQLSIFLRHYHPIFIRQNLHYRIFVIDQVDKDPFN
RGKLMNVGYNEAKKYFPYDCVVFHDVDLLLEDDRLMYSCQSSPQHLSVSL
DKYNYRLLYQELFGGIEMFTRDHFE
Run BLAST on NCBI

transcript from alignment at sc0002683:17844..18949+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041060 ID=TCONS_00041060|Name=TCONS_00041060|organism=Clytia hemisphaerica|type=transcript|length=1106bp|location=Sequence derived from alignment at sc0002683:17844..18949+ (Clytia hemisphaerica)
CCTTGCTTTTGCAGGTCGCGATCGTGATCCCATATCGCAATCGTGAAAGT
CAACTCAGCATTTTCCTCAGACATTATCACCCGATATTCATACGGCAGAA
TTTACATTACCGTATTTTTGTGATCGATCAGGTAAGAAAACGTACTTTTC
CTTGAAAAGTTTTATTCTTTTGGAATTTTTACCTGCGCATCTTTAGTGCG
CTTCTTGAATGAGTGAGCAGTCCATGCTAGGAACTCTTCTCTGGAACGAT
TGTTGAGAAAGCCTTGAAAGTAACAAACGTTTAACTGGGTTCTAAAATGA
TCATCTAAAgctgaaaaacaataaaaaaggcTTTCAAAGCCTTTTTCATG
ACATTGTCTTCGTTGCTAGGAATTAAAACTTCTAAATTAAGTCAAAAAGT
CTGCTACTGTTGCGATTGTTGGACCTAGGTCCCTGATATGGGATGATAAT
TTATAATGACAAATAAACCGGtttaaaagctttcaaaatattctttcaaa
aaaggTGGACAAAGACCCTTTCAATCGTGGAAAGCTGATGAACGTTGGAT
ACAACGAAGCGAAGAAATATTTCCCGTATGATTGCGTGGTTTTCCATGAT
GTTGATCTTTTGTTGGAAGATGACCGACTGATGTACTCGTGCCAATCTTC
ACCACAACATCTTTCTGTCAGCCTCGATAAATATAACTATAGGTATGTTT
TCTTTGTCATCAAGAAGATGATCAAGCCTTTGGTTTGATGTGTATTTCGA
GgagcaaaaaaacaacaaaagaatcCGAAAGATTATCTGGAACTTATAAA
GTACGTCAACTACCCAGGGTCACTTTCAAAAGTTAGGGTTGACAACTTCC
ATTAGCTTCAAACGGTCTGATTTTGTAAAATAGTCTGGACTGAGATTTAA
GGTAAACTAGAACATGCTAGTTTTATGTAAATTCTGATTTTATATTTTGA
GGACCACAACAGGTAACGCCAGAGGAATACAAGAAATAATGACTAAATAG
AGAAATGACATCCATTGTAAATTGACTTGAAACATTCTCTACTTTAAGGT
TATTATACCAAGAACTATTTGGAGGGATCGAGATGTTTACAAGAGACCAT
TTCGAA

Coding sequence (CDS) from alignment at sc0002683:17844..18949+

>TCONS_00041060 ID=TCONS_00041060|Name=TCONS_00041060|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0002683:17844..18949+ (Clytia hemisphaerica)
TTGCTTTTGCAGGTCGCGATCGTGATCCCATATCGCAATCGTGAAAGTCA
ACTCAGCATTTTCCTCAGACATTATCACCCGATATTCATACGGCAGAATT
TACATTACCGTATTTTTGTGATCGATCAGgTGGACAAAGACCCTTTCAAT
CGTGGAAAGCTGATGAACGTTGGATACAACGAAGCGAAGAAATATTTCCC
GTATGATTGCGTGGTTTTCCATGATGTTGATCTTTTGTTGGAAGATGACC
GACTGATGTACTCGTGCCAATCTTCACCACAACATCTTTCTGTCAGCCTC
GATAAATATAACTATAGGTTATTATACCAAGAACTATTTGGAGGGATCGA
GATGTTTACAAGAGACCATTTCGAATTGCTTTTGCAGGTCGCGATCGTGA
TCCCATATCGCAATCGTGAAAGTCAACTCAGCATTTTCCTCAGACATTAT
CACCCGATATTCATACGGCAGAATTTACATTACCGTATTTTTGTGATCGA
TCAGgTGGACAAAGACCCTTTCAATCGTGGAAAGCTGATGAACGTTGGAT
ACAACGAAGCGAAGAAATATTTCCCGTATGATTGCGTGGTTTTCCATGAT
GTTGATCTTTTGTTGGAAGATGACCGACTGATGTACTCGTGCCAATCTTC
ACCACAACATCTTTCTGTCAGCCTCGATAAATATAACTATAGGTTATTAT
ACCAAGAACTATTTGGAGGGATCGAGATGTTTACAAGAGACCATTTCGAA
TTGCTTTTGCAGGTCGCGATCGTGATCCCATATCGCAATCGTGAAAGTCA
ACTCAGCATTTTCCTCAGACATTATCACCCGATATTCATACGGCAGAATT
TACATTACCGTATTTTTGTGATCGATCAGgTGGACAAAGACCCTTTCAAT
CGTGGAAAGCTGATGAACGTTGGATACAACGAAGCGAAGAAATATTTCCC
GTATGATTGCGTGGTTTTCCATGATGTTGATCTTTTGTTGGAAGATGACC
GACTGATGTACTCGTGCCAATCTTCACCACAACATCTTTCTGTCAGCCTC
GATAAATATAACTATAGGTTATTATACCAAGAACTATTTGGAGGGATCGA
GATGTTTACAAGAGACCATTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025079XLOC_025079Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041060-proteinTCONS_00041060-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041060-exon-sc0002683-1491911889:17844..17974TCONS_00041060-exon-sc0002683-1491911889:17844..17974Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1510915933:17844..17974TCONS_00041060-exon-sc0002683-1510915933:17844..17974Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1575043694:17844..17974TCONS_00041060-exon-sc0002683-1575043694:17844..17974Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1491911889:18348..18535TCONS_00041060-exon-sc0002683-1491911889:18348..18535Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1510915933:18348..18535TCONS_00041060-exon-sc0002683-1510915933:18348..18535Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1575043694:18348..18535TCONS_00041060-exon-sc0002683-1575043694:18348..18535Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1491911889:18892..18949TCONS_00041060-exon-sc0002683-1491911889:18892..18949Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1510915933:18892..18949TCONS_00041060-exon-sc0002683-1510915933:18892..18949Clytia hemisphaericaexon
TCONS_00041060-exon-sc0002683-1575043694:18892..18949TCONS_00041060-exon-sc0002683-1575043694:18892..18949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002683supercontigsc0002683:17844..18949 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.422354	0.823724	0.478211	0.935709	43.2872	43.6578	60.5448	61.0023	32.7437	28.2145	25.4601	21.659	11.3762	13.127	4.31688	6.04821	13.6336	10.8867	10.1019	10.336	8.77965	6.27422	3.8741	3.96239	9.29599	9.91527	2.89566	2.78129	0.93756	2.14926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003859Galactosyl_T
IPR027791Galactosyl_T_C
IPR027995Galactosyl_T_N
IPR029044Nucleotide-diphossugar_trans
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
[Close]
BLAST of TCONS_00041060 vs. Swiss-Prot (Human)
Match: B4GT1 (Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5)

HSP 1 Score: 124.79 bits (312), Expect = 1.515e-34
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 3 
Query:   12 QVAIVIPYRNRESQLSIFLRHYHPIFIRQNLHYRIFVIDQVDKDPFNRGKLMNVGYNEAKKYFPYDCVVFHDVDLLLEDDRLMYSCQSSPQHLSVSLDKYNYRLLYQELFGGIEMFTRDHF 374
            +VAI+IP+RNR+  L  +L + HP+  RQ L Y I+VI+Q     FNR KL+NVG+ EA K + Y C VF DVDL+  +D   Y C S P+H+SV++DK+ + L Y + FGG+   ++  F
Sbjct:  177 KVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQF 297
The following BLAST results are available for this feature:
BLAST of TCONS_00041060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT11.515e-3445.45Beta-1,4-galactosyltransferase 1 OS=Homo sapiens G... [more]
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