TCONS_00041058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041058
Unique NameTCONS_00041058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041058 ID=TCONS_00041058|Name=TCONS_00041058|organism=Clytia hemisphaerica|type=transcript|length=526bp
GAAGTAACAACAAACGAGTTCGGTGACTTTATAATTTTCGCATgcaaaaa
agtatgaaaaaaatacagttgactctcgttatttcgaattcgaattacag
aaatcaTTTCAAGATATTTCTCATTAACGAGGACTGGAGTTAAgtataaa
ttatataaaaagattttgaaaaatatataattttttttcagcctATTTTA
GTATTGTGTAAATCCTTAGATATCTATATCTAGTTTTTCATTTCTGTAAT
GCCTTGCCAACTAATTTACCATCCAACCAATAGCACTGTGAACAATTCTA
ATGAGCCAACTAACTATAGTTTAATGTACCTCCAATGCGCCCTGTAAAAT
GCTTTTCCACTTAATCTCATCTAAAATGTAACTTTGAAATACAGATAAAA
TTTCACTCATCCTAACAATAATTTCTATCTTGGGCCCGACCCTGAGACTT
GATAGTTGAGAACTTTCCAGCCGCCATGTTTTCGGGGGGGGGGCTAGACT
TTGATGAGGATAGAGTAGTCACTATG
Run BLAST on NCBI

transcript from alignment at sc0002680:18801..19326

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041058 ID=TCONS_00041058|Name=TCONS_00041058|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0002680:18801..19326 (Clytia hemisphaerica)
CATAGTGACTACTCTATCCTCATCAAAGTCTAGCCCCCCCCCCGAAAACA
TGGCGGCTGGAAAGTTCTCAACTATCAAGTCTCAGGGTCGGGCCCAAGAT
AGAAATTATTGTTAGGATGAGTGAAATTTTATCTGTATTTCAAAGTTACA
TTTTAGATGAGATTAAGTGGAAAAGCATTTTACAGGGCGCATTGGAGGTA
CATTAAACTATAGTTAGTTGGCTCATTAGAATTGTTCACAGTGCTATTGG
TTGGATGGTAAATTAGTTGGCAAGGCATTACAGAAATGAAAAACTAGATA
TAGATATCTAAGGATTTACACAATACTAAAATaggctgaaaaaaaattat
atatttttcaaaatctttttatataatttatacTTAACTCCAGTCCTCGT
TAATGAGAAATATCTTGAAAtgatttctgtaattcgaattcgaaataacg
agagtcaactgtatttttttcatacttttttgcATGCGAAAATTATAAAG
TCACCGAACTCGTTTGTTGTTACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025077XLOC_025077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041058-exon-sc0002680-1491911889:18801..19326TCONS_00041058-exon-sc0002680-1491911889:18801..19326Clytia hemisphaericaexon
TCONS_00041058-exon-sc0002680-1510915933:18801..19326TCONS_00041058-exon-sc0002680-1510915933:18801..19326Clytia hemisphaericaexon
TCONS_00041058-exon-sc0002680-1575043694:18801..19326TCONS_00041058-exon-sc0002680-1575043694:18801..19326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002680supercontigsc0002680:18801..19326 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.335752	0.218274	0.506873	0.495896	0	0	0	0	0	0	0.79371	0.0745362	2.45628	1.70058	4.04817	4.29655	2.77252	2.15284	2.1946	1.49393	2.8134	2.21676	2.56644	2.56659	0.841124	1.82309	1.22688	1.14644	7.57231	6.01653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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