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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041052 ID=TCONS_00041052|Name=TCONS_00041052|organism=Clytia hemisphaerica|type=transcript|length=1132bp
CGAAAACGATGCAGCACGGCCACTAAGCTGTTCAGCAGGTCTGGTCCAGC
AAGAAGTTTGTCATTCAGAGATGTCCCTTTGAATTTTGCAGCAGCATCGA
ATACGACACGAACTTTTCCAGGTTTGTTGGGATGTGTCACTCCATGATGT
GGTATGTAATTGGTAACATCAGATCGAGATTTGACTTCAGAATCGGTTAG
AATACGAGCATGACCAAGATCGATGAATTCACGAATAGCAGTGTCGTACA
TACGAGCGAGTGTTGTGTCCTTGGCAAGGCTTTTTTCTAACGAGTCGAGT
CTCTGCATTGCGTAATCTCTATTGAAAGGCATTGTTGGATGGTCTTCTTT
CCAAAGTAGATCAACTTCCATACGATTGTCGATGATTTTGGATGTCTGTT
CCAGCTTCTCGAGGGCTCGCTGNTGGTCTTCTTTCCAAAGTAGATCAACT
TCCATACGATTGTCGATGATTTTGGATGTCTGTTCCAGCTTCTCGAGGGC
TCGCTGGTCGATAGGTGCAAGATTGCTCTTGTGCCAGTCTGGTAGAGTAC
CGTAAGATTCCATTTGCCAAAAACGTTCGAGTTTGTCGGAAATCTCGTCT
TTCGATCTCTTCAAAAAATTGCTGGTGACGATTAGCGAAGTGAAAGCTTT
TCCACCGAACAACATNTTGTGTGGCTTCTGAGATGAGTTGTTCAATGGTG
TAGAACGAACCAAGGTAATCGTCAACGTAGAAATTACGGAGGATTTCATC
ACGGATGAAATGTCTGTCTCCTCAGCACACGACCTGAGAGCGAAATTTGC
GATACAGGGTGAATCTTTCTTTCCGAACACGTGAAACAACAACATACAAT
CTTTAACCTCCCCATCAGGATCAAAGCGATAGAGGAATCTCAAGGTGTCA
GTGTCTTTGGGTGATACCTTGACTTGGTTGAACATTTTCTCGATATCTGC
TGATGCTGCAAAGCGACCAGCTCGAAAACGATGCAGCACGGCCACTAAGC
TGTTCAGCAGGTCTGGTCCAGCAAGAAGTTTGTCATTCAGAGATGTCCCT
TTGAATTTTGCAGCAGCATCGAATACGACACGAACTTTTCCAGGTTTGTT
GGGATGTGTCACTCCATGATGTGGTATGTAAT Run BLAST on NCBI protein sequence of TCONS_00041052-protein >TCONS_00041052-protein ID=TCONS_00041052-protein|Name=TCONS_00041052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
YIPHHGVTHPNKPGKVRVVFDAAAKFKGTSLNDKLLAGPDLLNSLVAVLH
RFRAGRFAASADIEKMFNQVKVSPKDTDTLRFLYRFDPDGEVKDCMLLFH
VFGKKDSPCIANFALRSCAEETDISSVMKSSVISTLTITLVRSTPLNNSS
QKPHXMLFGGKAFTSLIVTSNFLKRSKDEISDKLERFWQMESYGTLPDWH
KSNLAPIDQRALEKLEQTSKIIDNRMEVDLLWKEDXQRALEKLEQTSKII
DNRMEVDLLWKEDHPTMPFNRDYAMQRLDSLEKSLAKDTTLARMYDTAIR
EFIDLGHARILTDSEVKSRSDVTNYIPHHGVTHPNKPGKVRVVFDAAAKF
KGTSLNDKLLAGPDLLNSLVAVLHRF Run BLAST on NCBI transcript from alignment at sc0002678:12123..13254 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041052 ID=TCONS_00041052|Name=TCONS_00041052|organism=Clytia hemisphaerica|type=transcript|length=1132bp|location=Sequence derived from alignment at sc0002678:12123..13254 (Clytia hemisphaerica)
ATTACATACCACATCATGGAGTGACACATCCCAACAAACCTGGAAAAGTT
CGTGTCGTATTCGATGCTGCTGCAAAATTCAAAGGGACATCTCTGAATGA
CAAACTTCTTGCTGGACCAGACCTGCTGAACAGCTTAGTGGCCGTGCTGC
ATCGTTTTCGAGCTGGTCGCTTTGCAGCATCAGCAGATATCGAGAAAATG
TTCAACCAAGTCAAGGTATCACCCAAAGACACTGACACCTTGAGATTCCT
CTATCGCTTTGATCCTGATGGGGAGGTTAAAGATTGTATGTTGTTGTTTC
ACGTGTTCGGAAAGAAAGATTCACCCTGTATCGCAAATTTCGCTCTCAGG
TCGTGTGCTGAGGAGACAGACATTTCATCCGTGATGAAATCCTCCGTAAT
TTCTACGTTGACGATTACCTTGGTTCGTTCTACACCATTGAACAACTCAT
CTCAGAAGCCACACAANATGTTGTTCGGTGGAAAAGCTTTCACTTCGCTA
ATCGTCACCAGCAATTTTTTGAAGAGATCGAAAGACGAGATTTCCGACAA
ACTCGAACGTTTTTGGCAAATGGAATCTTACGGTACTCTACCAGACTGGC
ACAAGAGCAATCTTGCACCTATCGACCAGCGAGCCCTCGAGAAGCTGGAA
CAGACATCCAAAATCATCGACAATCGTATGGAAGTTGATCTACTTTGGAA
AGAAGACCANCAGCGAGCCCTCGAGAAGCTGGAACAGACATCCAAAATCA
TCGACAATCGTATGGAAGTTGATCTACTTTGGAAAGAAGACCATCCAACA
ATGCCTTTCAATAGAGATTACGCAATGCAGAGACTCGACTCGTTAGAAAA
AAGCCTTGCCAAGGACACAACACTCGCTCGTATGTACGACACTGCTATTC
GTGAATTCATCGATCTTGGTCATGCTCGTATTCTAACCGATTCTGAAGTC
AAATCTCGATCTGATGTTACCAATTACATACCACATCATGGAGTGACACA
TCCCAACAAACCTGGAAAAGTTCGTGTCGTATTCGATGCTGCTGCAAAAT
TCAAAGGGACATCTCTGAATGACAAACTTCTTGCTGGACCAGACCTGCTG
AACAGCTTAGTGGCCGTGCTGCATCGTTTTCG Coding sequence (CDS) from alignment at sc0002678:12123..13254 >TCONS_00041052 ID=TCONS_00041052|Name=TCONS_00041052|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at sc0002678:12123..13254 (Clytia hemisphaerica)
TACATACCACATCATGGAGTGACACATCCCAACAAACCTGGAAAAGTTCG
TGTCGTATTCGATGCTGCTGCAAAATTCAAAGGGACATCTCTGAATGACA
AACTTCTTGCTGGACCAGACCTGCTGAACAGCTTAGTGGCCGTGCTGCAT
CGTTTTCGAGCTGGTCGCTTTGCAGCATCAGCAGATATCGAGAAAATGTT
CAACCAAGTCAAGGTATCACCCAAAGACACTGACACCTTGAGATTCCTCT
ATCGCTTTGATCCTGATGGGGAGGTTAAAGATTGTATGTTGTTGTTTCAC
GTGTTCGGAAAGAAAGATTCACCCTGTATCGCAAATTTCGCTCTCAGGTC
GTGTGCTGAGGAGACAGACATTTCATCCGTGATGAAATCCTCCGTAATTT
CTACGTTGACGATTACCTTGGTTCGTTCTACACCATTGAACAACTCATCT
CAGAAGCCACACAANATGTTGTTCGGTGGAAAAGCTTTCACTTCGCTAAT
CGTCACCAGCAATTTTTTGAAGAGATCGAAAGACGAGATTTCCGACAAAC
TCGAACGTTTTTGGCAAATGGAATCTTACGGTACTCTACCAGACTGGCAC
AAGAGCAATCTTGCACCTATCGACCAGCGAGCCCTCGAGAAGCTGGAACA
GACATCCAAAATCATCGACAATCGTATGGAAGTTGATCTACTTTGGAAAG
AAGACCANCAGCGAGCCCTCGAGAAGCTGGAACAGACATCCAAAATCATC
GACAATCGTATGGAAGTTGATCTACTTTGGAAAGAAGACCATCCAACAAT
GCCTTTCAATAGAGATTACGCAATGCAGAGACTCGACTCGTTAGAAAAAA
GCCTTGCCAAGGACACAACACTCGCTCGTATGTACGACACTGCTATTCGT
GAATTCATCGATCTTGGTCATGCTCGTATTCTAACCGATTCTGAAGTCAA
ATCTCGATCTGATGTTACCAATTACATACCACATCATGGAGTGACACATC
CCAACAAACCTGGAAAAGTTCGTGTCGTATTCGATGCTGCTGCAAAATTC
AAAGGGACATCTCTGAATGACAAACTTCTTGCTGGACCAGACCTGCTGAA
CAGCTTAGTGGCCGTGCTGCATCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041052-exon-sc0002678-1491911889:12123..13254 | TCONS_00041052-exon-sc0002678-1491911889:12123..13254 | Clytia hemisphaerica | exon |
| TCONS_00041052-exon-sc0002678-1510915933:12123..13254 | TCONS_00041052-exon-sc0002678-1510915933:12123..13254 | Clytia hemisphaerica | exon |
| TCONS_00041052-exon-sc0002678-1575043694:12123..13254 | TCONS_00041052-exon-sc0002678-1575043694:12123..13254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002678 | supercontig | sc0002678:12123..13254 . |
Blast
The following BLAST results are available for this feature:
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