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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041048 ID=TCONS_00041048|Name=TCONS_00041048|organism=Clytia hemisphaerica|type=transcript|length=453bp
CTCAACCGAATTGTAATCTGAAAGATAATTCAATGCAGCATTTCCTTGTA
TTTGTATTTGTTCAGACAATGGGTGGGGAGAGAGTAACCGAAATATATTT
TGACATATCTAGTTGTTAAAAATATATTCTTTCTAAAATttctaatgaag
aaattttaattcgtaaattaaaaaaaaagttaaattcgTCATAtttagtt
ttttacaaaaattgatccagacctggattttcaaaattttttgaagagat
TACCCTTGACCTGGTCATTCAATCCAGCCAGGAAATGAAAACAGTAATTT
AAGTTCTTTCTCTACAATCACATAGCGTTCTCGTATCGTTCAGAGACATT
TGACCAGTTGACAATATCGAAGATGGCTTTGACGTAATCCGGACGAACGT
TCTTATACTGTAGGTAATAAGCGTGTTCCCAAACGTCAATACCAAGCAAC
GGG Run BLAST on NCBI transcript from alignment at sc0002676:6283..15526- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041048 ID=TCONS_00041048|Name=TCONS_00041048|organism=Clytia hemisphaerica|type=transcript|length=9244bp|location=Sequence derived from alignment at sc0002676:6283..15526- (Clytia hemisphaerica)
CTCAACCGAATTGTAATCTGAAAGATAATTCAATGCAGCATTTCCTTGTA
TTTGTATTTGTTCAGACAATGGGTGGGGAGAGAGTAACCGAAATATATTT
TGACATATCTAGTTGTTAAAAATATATTCTTTCTAAAATTTCTAATGAAG
AAATTTTAATTCGTAAATTAAAAAAAAAGTTAAATTCGTCATATTTAGTT
TTTTACAAAAATTGATCCAGACCTGGATTTTCAAAATTTTTTGAAGAGAT
TACCCTTGACCTGGTCATTCAATCCAGCCAGGAAATGAAAACAGTAATTT
AAGTTCTTTCTCTACAATCACATAGCGTTCTCGTATCGTTCAGATACATT
TGACCAGTTGACAATATCGAAGATGGCTTTGACGTAATCCGGACGAACGT
TCTTATACTGTAGGTAATAAGCGTGTTCCCAAACGTCAATACCAAGCAAC
GGGATACGTCCTGAAATAAAGAAACGGAATGAATGATATTATTTTGATGG
GTATCCTGGCTGTGGCGATTTGACACTAAGGGTTAACAATGGTTAATTTA
ATGTCATTGATTTTCTTGAATGACCTGTTTAAAGTAGTTTTAGCATCATT
TTCTATCATAATTTTTATTTCAGTAATTTTCAGGGATAATATAGTCTACA
TAATATACAGCTCCAGGCTTTTAGGCCTTACTCGAGTAGGAGTTTTACGC
TGGAAACGAAGGAAGATATGACGTAGCCAAGGATAATAAAGCTGGAAAAT
TAAGTCTCATTTTGCTTAAAACTTTAAACATACTTAAAAAATTTATGAAT
GTCTGTAAAAGATACTAATGCAATTTCCTTACCAGTGGTCGATTGTAGAG
GGTCTTGGTTTGCCATGGCATCGATTGTTAACATCGAAGTCTTTTTATCA
TAACCCTGTCGGTTGGCAAGGAAAGAAGTGTTACAAAGAGATGGCCAAAC
TAATATTTTAATAACAAAACCGACGAAATGGGCTCTTCCAGAAAATATCC
GTACATGGGGGGTGGAGGATATATTGTCCAGGTGGTAGGAAAATCATCAA
AATTGTACGGGGAGCCAAAAGTCACTTTGTCCGAGGGGTATATCACTGAA
AATTGTTATATCCTCCACCCCCCCCATTTTTAAGGAAAGCAATTTTCGCG
AATACACTCTTCTCGAAAATGCATAAAATAATTGCAAACCTCGTTCTCAA
AGACTTACCTTATCGGCCCTTTTTACGCCGGCCCTTTATTGGCGTTATTT
TTGGGCACGTGGCGTAATAAGTGCCAAGATTTTGCAATTTTTACCTAAAA
GTGGCGTTCATTTTCTATCATTATTTTTCAATTTAAAGGATTTTAGGTAT
GATTCGAAGACAAAAATTATCCATATCTAAGACCTTACACGAAAATCAGT
AATTTTGAATGGGATTTTCAACAATTTACTACCGAATTTTTTAAACATTA
TTTACGAATTTGAAGTATAAGTAGCCATTTTTACAAATTTTGGCGTAAAA
GGGGCCCGCGTTAAATTAGGGCCGGCGTAAAAGGGCCAATAAAATATATT
AATATTATACGCGATACATTGTGCTTCACGGGTTTGAATTTACGTGAATT
TATAACAAAACGAAAAAAGCGAAGCGACTTCTTCGCACAAAAACTAGTTA
TCCAGCACTTACCAGCCATCCCCAACCGGAGCCTTGAACAGCAACAGTTG
CATTCGTCAATTGTTCTTTCATGTTTGCAAATGATCCGAAATCACGAACG
ATCGCTGCTAACAAATCACCTGCAAGAGATAAAGAGAATAAAATGAAATA
CTTTTGAATTCAAGATCGGAATGAAGCTATTTTTCGATTTTTTGTTATTC
ACCAACTTCTGTAAAAATTGATTACAATCAAAATCTATTGAAATCGCTTA
AAATTCTTATCTTAAAATCATCCTGAAATATCTTTTATAAAACTATTTTC
AAGAAATATTTTTTTTAGACTTTCGCCGTATTGATCAATAAAGACTTACT
TTCGCGATAGGAAAATACCAAAATTCGATGAAATTGATTTAAGATATCAA
AAATTGACGTCACAAAAACTTATTGACGTCAAATAATATAAAGAATGCGA
CTTTTATGAATTCAATCCAGTTTCGTTCGAAAACCCAACCTATCAAGCCG
TAAAAGTTTGAAAAGAGCTTTTTGAGTTGGATTTATAGTGCAATATATTT
TAATTGGATTAAAAGAAGTCAATTCAATCAAAAATCAACCAGACTCTGTT
GCAGGAACAGAGAATTTAGATTTTTCAAAATAAAAACCATCAGTTCGTCA
TAAAAATGAGGAACTCTTTAAAGGTTTTTGTTTTGCCGTGCCAAGACTTG
GGTCTTTGGCAAGAGGAGCGGGATGTCGTTGAACAGGTGATTCAAGAGAG
ATCCTTCCTTTTGAATCAAAAGCAAGAGAAGGGAGAGTGGGAAAGCTGCT
TTAACGCGCCTGAAAAACAACATTACGCTAAGAAGCAAAGTCGCGTAAAA
GAGATGGAGAAACGTGTTGAACAAATCATGGGTAAGTTGTTTAATTTCTT
TGCTTTTCTTAGGAGTGAATAGGAGCTATTTTTCTCGAATGAAATCCATT
TACGCTGTCGAATAATTTGCATGATTTCCCAAGTTCCGTTGGGTCGAGAA
CAAGACGGCTCAGACGTCTTGAAATCACATCAGTTCAGATTCTTTCACAG
CAAAGTGACCAAAATAAACTTGATTATGCTTTAATATTATTTCCACAGAG
CGTGAGAACCGCATCAATTTGAGCGGGGGTCGACGGAAATCCATGCAATG
CATCAAACCCAACGTTAATTTCTATGAGAACTGTCTAACAAGTGGAGCCA
TGGCAGATAGTAAGCCAAATTTATCTAGATCCTCAAACTCTACTGTCTTT
GGATGTTTAAAAATATCACAAGAACCAACATTGGTATCATCAAATCATAA
AAGGAGATTCTCTCGATACATGAATGACCTTGAACCTAAGAAAGTTGCAC
CAAGCACATCATTGTACTTACGACCAACTCCATCTGAGAAACGAATGAAG
ACATCTTCCTTGCAATACCCTGAGTCATCAGGAATGCCCGAGGTTCAATC
AGAAGTCAATGTTGAATTGAAACATCTAAAAGAAGTCGAAATGGAGGCTA
AAGCTCAATGGAAAGCCAGAGTCGTGTTTAAAGAATGCTTGGAGCTGTGC
ACTCCAGAGCTTAAGGATGAGTTGAGGAAATTGGACTCCACCATTAGCGA
GGAGGCTTTGGATAAAACCATGATGCGTTTCATGCAGTTCGATTCCGTTC
GCCGAAGTTTGACTGAAGTTGAGCGTATTACAAATATCATGGACCCAGGA
CTTTTGTCTGGTGAACGTGTCAAGCATTACCGTGCGATTGTTAACGATTA
TCTCGGAGGACATGGACTTTCAGATGAACATGGACCAGTAAAGGATCGAG
AATTGAGCAACGGTTGCAAGTTGTTTCATGAGATGGACGAGGAAGACCAA
AAGACGTTAGATAAATTTCAAGAAAACTTGAAAAAGAAACGAGAAGCTGC
CAAATCTGCCAAGCAAAATAAAGGTGAGGAGACCTTTTCATTGTGTTGTT
AAAATAACATACCCCGCAATTTTTAAGTTTCAAAGAAAAATTAGTGGTAT
CTAAACTTAAATGAGAAACGTTTAAAGTGTCTCCTAAGAAGGTCACTGTC
AATAATCTAAACATTTTGCGTTACTTTTTGGTTTCACAGATCAAGCGAGT
GAGCGAAAAGAAGTTTTGCCACAGCTTCCAATCAAATATTCTGTCCATCC
AGAAACATACAACGACAAAGTAAATAAAGCTGTAGCGCAAGTCAATGCTT
CCGTCAAGAGAGCCACGGTCTACGTACCACAAAAAACAGGCAAAGAACGA
AAAAGTGCTTTCTATAACCTGAGCAAAAGGTTTGACGCTGATCTCAGGCG
ACAACATGAGAAAAAGAAAGCCGAACGCGAAAAACAAACCGGCTTATTTA
TTGGAAACCGGACAATCGTTCCGGTTCCGAAACATCGACGTTACGAAGCG
TCCGCAATGACGTTAGATGAACGCCGTGAGAACACAGAAGAATTGATGGA
GAAGTTTCGTCACGAAGTCGCGAACGCGTTGACGATTGACGAAGGTGCCG
GTCACCGTATGTCTGCAGATGCGTATTGCAAGTTCTTGATCGATAACGCG
TATGATTACGGTGTACCACCACGTTACGTCGAAGAGCCGCGCGTCCGACG
AAAAATTCAAGAAGGCAGTTATCCTAATTGGACAGTAAAAGAGGAGGAAC
TTTCCGCTATTTTGAGGTATGTCCGTTATTGAATGACAAATCATTCTTTT
AATTTCTTTTTACTATGGTAGACAAAAAAACTTCGTTGATGAAAGTCAAT
TTTGGCTTTGCTATTCTGTACACAAAAATTCACACCGTTTAAAGCAGTAC
AATCATACAATCTTTGTTATATATTGTCTCTTTTGAGAAAGATTCTACGC
AAAACCTTAGAAATTCTGTATAGATGTGGGGTCGGTTCCAGGTAGAGACA
GACCAAAGAAAATTCAAACACAAATACGAATAAAGATTCATTTTCAATCT
TTCTACTATTCTACTTTTAGATTCGCCTGGAAAGGCAAATTGAAGAAATT
ACGTAAGGTGTTGAAGGAAGATAAGTTTCAACAGAAAATCAACAGAGTTG
ACGCACAAAAGAGGTAAAATGATGGACTAAAATATGAAAGATAGTTCTAA
GAATTTGATGAGTAAGCTAGAAGGGTTAAAATACAAAGCAGAGTAGTCTT
ATGCTACAATTATAAAACAAAGCCAAAAGGTTTACTCGCCTGGTTTGTCC
CAGGATGATAAAAATTGTTAATACGGTTGACTTTCTCTCTGTCTAATTCG
ATCTTCGGTGGACCAAAAATGTTATCAAATCGGAGAAATATTCGAATTAC
AGAGAGTAAATTAAACTACTTTTCAACCAAAAGGGAACAATATTTTAGTT
CAAATTACAGAAAGATTCAAATAATAGAAGTTCGAACTAAAGCGAGTTGA
CTGTATTAATTTTGGACTGTTCACACGAAGAAGCTTTTGAGCATCATTTA
TCGTATTCGCACTCTAATTTGAGGTAATTTTATATCCATGGGGACTATAT
CTTTTAATGTGTCTCTCTTCACTTTCACAGGACCGCACTGCACTTCGCCG
CTTCTTGGGGATGCATTAAAACTTTAAATATCTTATTGAGATGTCCTGGT
GTCGATGTCAACAAGCAAGACAACCATGGCAAAACTCCACTCTATAAAGT
AAGTGACTGGTCATTTATGTTTGACGGTGTTAAAACCGAGTAACTTTAAA
GGTTTTCTTAAGACAGGTTTTTTTTTTAGTGAGAATTATGAATAAAGATC
AATTCCATTAGCTAGGAACATTCTTCTACATCAGTGAATTTTGTGACATA
TTCGTTGTCCGAGATTTTGAGCTGTATTTTCAATGGAGATTCAATTGATC
GTATAACATGTAAACTCTTTTCGGTGATTCTGGCTCCACCAGTTAACATA
AAAAAATCGAGTGTGTTCTCGAGTGCCGGCTATACACTATACAATGACCA
TATTAACACATATGATGAACTTTCTCTCGTTTAGGCCATGGAAGTCGGTT
CCATCGAGTGCGTCAAAGCGTTGATCAAAGCAGGCGCTAACACACGTATC
AAGGCACAAGATTCTCGCGATGCTTTAACTTATTTATTGCATTTCTATGG
TGATGAACGCTTCGAGATGTTCAAACTTCTGTGGGACGTCTCACTAAGAA
CAAACGTAAGTTATACACCGCACGCACCCTCCCTTTGGGAGGCCTAGGTT
CTAGATTGAATCATAATGACATCTTCGATATACATGTTTATCACCAAGAG
GCATTGAGGCAAATTTCTTCCACTTAACATTGTTCAAAGTCTGCTTATAA
CACTCCAGAAAAATTTGTCTTCTAGGCTCTTATCTTAGCTATTTTAATGT
AATGGAATAGTATGTTGACTTGAAACTTATTGAAATTTCAATATCCAATT
TTCTTCACAGACTGAAAGCAGATTGGGCGAAATGAGCTTTCTACATATGG
CTTTGATGAACAATAAACACATCGTTGTTCTGAAGTGTATCGATTACATG
TTGCACCAAGGACTCGATGTGAACGCCAGAGAAGGCAACGGGCGGTAAGT
GATTGCAACAACATTATTTTCTACTTATATCTGCTTTGTTTTGGCTTTAG
TTGGAAGATAATCTCCTATATTGATAGCTCTCCAGGGCTTTTGAGGAAAT
CGCATATCCAATTGCCGAAAAAGATAACATTGTTAACATTCAAATTCAAG
TCTTATGACAAAATGGAATAAATGTATCAATATGCAATTCCCATCCTTTA
ACTTTTTCAACTTCAACTTATAGAACCGCAGCTCACATTGCAGTCATTGA
TGGACGAGCAGATATTCTTCAATTATTGATGGCTCACCAGATGAACCCTC
TTTACGAAGATCTCGACAATAAGACTGTCATCGATTATGTTCATCTCCGT
GTAATCGATTCGTTATCACACGATTGCAATCGAAAAGAAACGAACACCAG
ACCAATCGAATTAAATCGAATCTAATTGATCAATTAAAATTTGATTGTCG
AATTTGATTCGAAGTAGTTGTCATTTTACCGTTTTCGATTTTGTTCTTCG
GTATTTGTTCAAGCAAGTTATCGAATTCCAATCGGATACACCTCTTCTCG
AAAATGATTAAATAATTACCAACCTCGTTCTCAATGACTTGTTGCCAGGA
TACTTCAATGTCGTCAGACATAATTGATGTTTTCAAGAGTTTGCGGTACT
GTATCAAAATTGAAAACGGTCTTTTGGGAAAACATATTACATGTGTAAAT
GTCGTTTGAAGTAATCATTTCATTTGAAAACGAGGCCCGAGATGGTGTTG
ACTTATCGCTAGAATATTGTATTGATAAAATTACGCGATTAATGTTTGGA
TGACATTATAAATCAAAAACGAATGATGATAACTCATTTCTTCATTTTCT
TCGTTTTTCAGAATTTACAACTTTTTGCAAAATTATTTCGAGGATGGTCC
AGGTGACATTGCAGAAGCATCCAACCTTCGTGATGGTTCAAACAAACACA
ACATGTAAGCAAGTAGATTTCAGTAGAATCTTTATTTCTTTGTGTTTCCA
TTATTAATTAATTAGACCTGATTGGTTAAGTGGTCAATCAAGAATGTGTC
TATGTGATGATGGACAAGTAAACTTAAACTGGCAATGCCTTCAATACAGT
AAAACAGCAAATGTATCTGAGACAAAACTCAAAAGTTTTGAAATGGAGGA
CGTTTTCCTTTTTTTTGGCACTTGACTTAGACTTTTTGTATAATATTTTA
ATCGTTGGTCCTTCTTTTCTTACGTTTTCAGGCGACAAGCAGAAGCATAC
CGAACCAAATATTTCGGACATAGATTTCTCTGATTCCATTCATCAGCCGT
TGTGTCTATATATTTATATATTTTTTTATCAAACGTTTTTTTAATATTTT
CATAAAAATCAAAAAATTTTAACCTTGGATTTTGTAATAGCTTTTTTATA
AATAATTTTGTTTTTTCTTTGCAGATTTTTTCTCATTTTTCAATGTTTGT
AAATTATTTTTCTCATCGTGGATTTTTTTCTTAATTATTTACCTTGTAAA
TATATACCTATACCGTAAATTTAATAAAATTCTTCTTCACTCGTCTCATA
TCCATTTTTTCTCCTTTATCTTTGGATAGGCCAGATATATAAATCGACCA
CGTTTTAAATCATAGGACAGTTAGTTTCAGATCACCTTAAGTGGATAGAT
TTTCGCGTAGAATTATTTTCGCGAATCAGGTAGAATTTAAAGAACCTAAT
CTCGGAATAACCAATCTGGCCGACATATAAGGAGTGTCTTTACCTTTGGG
TTCGCCTCCACCGTTGGGTGAGAGATTGGTCCAGAAGATGGTGTGATTGA
CGTGGCCTCCTCCGTTGAATCGAAGTGCTGGTTGAAGTCATATCAATTTT
GGTAAGTGGCCTGAAGAAATAAGATGCCAATTAACCAATGAAAAAGTTCA
AGTAAAAGATGATTTAAATACCTATCTCTATAATTCCATCTTAAAGGGAC
CAAAACTTTATTGCATAATAGAAAGATTTGGAATAGAGAGTATTTTTTAT
ACTACTTTTAAGCAAAGGGGGCCTAATTCGAATTACAGAAAAAATTGACC
CAACCGGTCCAGTCCAGGTTGAATTTAATGAAAATCTTGAAGTAGAATCT
GTGAGTTAGATTAAATGACATTCCTCATATCACCTTGAGACAGAGCATCT
TGTAGCTGTTCTTCCGCGGCGTTCAAATTATTGACGTACGTTTGATGATG
TTTAGAATGATGAAGGGTCATAATTTCTTCAGGGATGATTGGTTCCAATG
ACGAGTATTCATAATCGAGAGCTGGTAAAGTGTGTTTTGATGCAACTTGC
ACTGTTTGCAGAGCTTGTTTTGAAAGTGCACGACGCGTGTTTCGGGCAAC
TGTCGATAGCATTTTTATGTTTTGATTATTAAGTCTTTACAAAATAAAAA
CATCTTATAATATATTAGAGCAACAAATTAGTAATATCAGAATCAGAAAG
ACTTCCCTATAAAGACCAGATAGCATAAACTAAAAGAAAGTATGATAATA
AGTCATGTTACCAAAAACATTGTTTCATAAACGGGACGAGGCTTGCTCTA
CGTCACAAGTCATAGATAGACAAACAGTTTGCATAGAGGTCTCAACCGAA
TTGTAATCTGAAAGATAATTCAATGCAGCATTTCTTTGTATTTGTATTTG
TTCAGACAATGGGTGGGGAGAGAGTAACCTAAATATATTGTGACATATCT
AGTTGTTAAAAATATATTCTTTCTAAAATTTCTAATGAAGAAATTTTAAT
TCGTAAATTAAAAAAAAGAGCTAAATTCATCATATTTAGTTTTTTACAAA
AATTGATCCAGACCTGGATTTTCAAAATTTTTTGAAGAGATTACCCTCGA
CCTGCTCATTCAATCCAGCCAGGAAATGAAAACATTAATTTAAGTTCTTT
CTCTACAATCACATAGCGTTCTCGTATCGTTCAGAGACATTTGACCAGTT
GACAATATCGAAGATGGCTTTGACGTAATCCGGACGAACGTTCTTATACT
GTAGGTAATAAGCGTGTTCCCAAACGTCAATACCAAGCAACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041048-exon-sc0002676-1575043694:15206..15526 | TCONS_00041048-exon-sc0002676-1575043694:15206..15526 | Clytia hemisphaerica | exon |
| TCONS_00041048-exon-sc0002676-1575043694:6283..6414 | TCONS_00041048-exon-sc0002676-1575043694:6283..6414 | Clytia hemisphaerica | exon |
| TCONS_00041048-exon-sc0002676-1510915933:15206..15526 | TCONS_00041048-exon-sc0002676-1510915933:15206..15526 | Clytia hemisphaerica | exon |
| TCONS_00041048-exon-sc0002676-1510915933:6283..6414 | TCONS_00041048-exon-sc0002676-1510915933:6283..6414 | Clytia hemisphaerica | exon |
| TCONS_00041048-exon-sc0002676-1491911889:15206..15526 | TCONS_00041048-exon-sc0002676-1491911889:15206..15526 | Clytia hemisphaerica | exon |
| TCONS_00041048-exon-sc0002676-1491911889:6283..6414 | TCONS_00041048-exon-sc0002676-1491911889:6283..6414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002676 | supercontig | sc0002676:6283..15526 - |
Blast
BLAST of TCONS_00041048 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.005e-18 Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = -2
Query: 333 PLLGIDVWEHAYYLQYKNVRPDYVKAIFDIVNWSNVSERY 452
PLLGIDVWEHAYYLQYKNVRPDY+KAI++++NW NV+ERY
Sbjct: 178 PLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
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