TCONS_00041047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041047
Unique NameTCONS_00041047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041047 ID=TCONS_00041047|Name=TCONS_00041047|organism=Clytia hemisphaerica|type=transcript|length=571bp
AATTGTAATCTGAAAGATAATTCAATGCAgcatttctttgtatttgtatt
TGTTCAGACAATGGGTGGGGAGAGAGTAACCTAAATATATTGTGACATAT
CTAGTTGTTAAAAATATATTCTTTCTAAAATttctaatgaagaaatttta
attcgtaaattaaaaaaaagagctAAATTCATCATAtttagttttttaca
aaaattgatccagacctggattttcaaaattttttgaagagatTACCCTC
GACCTGCTCATTCAATCCAGCCAGGAAATGAAAACATTAATTTAAGTTCT
TTCTCTACAATCACATAGCGTTCTCGTATCGTTCAGAGACATTTGACCAG
TTGACAATATCGAAGATGGCTTTGACGTAATCCGGACGAACGTTCTTATA
CTGTAGGTAATAAGCGTGTTCCCAAACGTCAATACCAAGCAACGGGATAC
GTCCTGAAATAAAGAAACGGAATGAATGATATTATTTTGATGGGTAGCCT
GGCTCTgggggacgagatggagtttttacaagctcttatttgatttcgtt
ggtcgttaaccagtaataaaa
Run BLAST on NCBI

transcript from alignment at sc0002676:6158..6728-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041047 ID=TCONS_00041047|Name=TCONS_00041047|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0002676:6158..6728- (Clytia hemisphaerica)
AATTGTAATCTGAAAGATAATTCAATGCAGCATTTCTTTGTATTTGTATT
TGTTCAGACAATGGGTGGGGAGAGAGTAACCTAAATATATTGTGACATAT
CTAGTTGTTAAAAATATATTCTTTCTAAAATTTCTAATGAAGAAATTTTA
ATTCGTAAATTAAAAAAAAGAGCTAAATTCATCATATTTAGTTTTTTACA
AAAATTGATCCAGACCTGGATTTTCAAAATTTTTTGAAGAGATTACCCTC
GACCTGCTCATTCAATCCAGCCAGGAAATGAAAACATTAATTTAAGTTCT
TTCTCTACAATCACATAGCGTTCTCGTATCGTTCAGAGACATTTGACCAG
TTGACAATATCGAAGATGGCTTTGACGTAATCCGGACGAACGTTCTTATA
CTGTAGGTAATAAGCGTGTTCCCAAACGTCAATACCAAGCAACGGGATAC
GTCCTGAAATAAAGAAACGGAATGAATGATATTATTTTGATGGGTAGCCT
GGCTCTGGGGGACGAGATGGAGTTTTTACAAGCTCTTATTTGATTTCGTT
GGTCGTTAACCAGTAATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025067XLOC_025067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041047-exon-sc0002676-1575043694:6158..6728TCONS_00041047-exon-sc0002676-1575043694:6158..6728Clytia hemisphaericaexon
TCONS_00041047-exon-sc0002676-1510915933:6158..6728TCONS_00041047-exon-sc0002676-1510915933:6158..6728Clytia hemisphaericaexon
TCONS_00041047-exon-sc0002676-1491911889:6158..6728TCONS_00041047-exon-sc0002676-1491911889:6158..6728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002676supercontigsc0002676:6158..6728 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.4798	45.0602	51.309	63.5669	30.5735	22.329	25.0257	29.8498	25.0069	23.2004	19.5588	19.4067	11.8376	10.3069	20.5144	27.4828	36.1381	31.6243	10.5569	10.7061	19.7275	18.1943	24.6506	23.7458	15.0678	16.6902	27.3524	19.8942	20.0383	17.032
Blast
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BLAST of TCONS_00041047 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.061e-19
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = -1 
Query:  326 ISGRIPLLGIDVWEHAYYLQYKNVRPDYVKAIFDIVNWSNVSERY 460
             +G IPLLGIDVWEHAYYLQYKNVRPDY+KAI++++NW NV+ERY
Sbjct:  173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
BLAST of TCONS_00041047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM3.061e-1977.78Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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