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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041041 ID=TCONS_00041041|Name=TCONS_00041041|organism=Clytia hemisphaerica|type=transcript|length=136bp
TCGTCATTGGAACCAATCATCCCTGAAGAAATTATGACCCTTCATCATTC
TAAACATCATCAAACGTACGTTAATAATTTGAACGCCGCGGAAGAACAAT
TACAAGATGCTCTGTCTCAAGGCGACGTACCAAAAG Run BLAST on NCBI transcript from alignment at sc0002676:7073..16265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041041 ID=TCONS_00041041|Name=TCONS_00041041|organism=Clytia hemisphaerica|type=transcript|length=9193bp|location=Sequence derived from alignment at sc0002676:7073..16265+ (Clytia hemisphaerica)
TCGTCATTGGAACCAATCATCCCTGAAGAAATTATGACCCTTCATCATTC
TAAACATCATCAAACGTACGTCAATAATTTGAACGCCGCGGAAGAACAGC
TACAAGATGCTCTGTCTCAAGGTGATATGAGGAATGTCATTTAATCTAAC
TCACAGATTCTACTTcaagattttcattaaattcaACCTGGACTGGACCG
GTtgggtcaattttttctgtaattcgaattagGCCCCCTTTGCTTAAAAG
TAGTATAAAAAATACTCTCTATTCCAAATCTTTCTATTATGCAATAAAGT
TTTGGTCCCTTTAAGATGGAATTATAGAGATAGGTATTTAAATCATCTTT
TACTTGAACTTTTTCATTGGTTAATTGGCATCTTATTTCTTCAGGCCACT
TACCAAAATTGATATGACTTCAACCAGCACTTCGATTCAACGGAGGAGGC
CACGTCAATCACACCATCTTCTGGACCAATCTCTCACCCAACGGTGGAGG
CGAACCCAAAGGTAAAGACACTCCTTATATGTCGGCCAGATTGGTTATTC
CGAGATTAGGTTCTTTAAATTCTAcctgattcgcgaaaataaTTCTACGC
GAAAATCTATCCACTTAAGGTGATCTGAAACTAACTGTCCTATGATTTAA
AACGTGGTCGATTTATATATCTGGCCTATCCAAAGATAAAGGAGAAAAAA
TGGATATGAGACGAGTGAAGaagaattttattaaatttacgGTATAGGTA
TATATTTACAAGGTaaataattaagaaaaaaatccacgatgagaaaaata
atttacaaacattgaaaaatgagaaaaaatctgcaaagaaaaaacaaaat
tatttataaaaaagctattacaaAATCCAaggttaaaattttttgatttt
tatgaaaatattaaaaaaacgtttgataaaaaaatatataaatatatagA
CACAACGGCTGATGAATGGAATCAGAGAAATCTATGTCCGAAATATTTGG
TTCGGTATGCTTCTGCTTGTCGCCTGAAAACGTAAGAAAAGAAGGACCAA
CGATTAAAATATTATACAAAAAGTCTAAGTCAAGtgccaaaaaaaaggaa
aacgtcctccatttcaaaacttttgagttTTGTCTCagatacatttgctg
ttttacTGTATTGAAGGCATTGCCAGTTTAAGTTTACTTGTCCATCATCA
CATAGACACATTCTTGATTGACCACTTAACCAATCAGGTCTAATTAATTA
ATAATGGAAACACAAAGAAATAAAGATTCTACTGAAATCTACTTGCTTAC
ATGTTGTGTTTGTTTGAACCATCACGAAGGTTGGATGCTTCTGCAATGTC
ACCTGGACCATCCTCGAAATAATTTTGCAAAAAGttgtaaattctgaaaa
acgaagaaaatgaagaaatgagTTATCATCATTCGTTTTTGATTTATAAT
GTCATCCAAACATTAATCGCGTAATTTTATCAATACAATATTCTAGCGAT
AAGTCAACACCATCTcgggcctcgttttcaaatgaaatgatTACTTCAAA
CGACATTTACACATGTAATATGTTTTCCCAAAAGAccgttttcaattttg
atacagTACCGCAAACTCTTGAAAACATCAATTATGTCTGACGACATTGA
AGTATCCTGGCAACAAGTCATTGAGAACGAGGTTGGTAATTATTTAATCA
TTTTCGAGAAGAGGTGTATCCGATTGGAATTCGATAACTTGCTTGAACAA
ATACCGAAGAACAAAATCGAAAACGGTAAAATGACAACTACTTCGAATCA
AATTCGACAATCAAATTTTAATTGATCAATTAGATTCGATTTAATTCGAT
TGGTCTGGTGTTCGTTTCTTTTCGATTGCAATCGTGTGATAACGAATCGA
TTACACGGAGATGAACATAATCGATGACAGTCTTATTGTCGAGATCTTCG
TAAAGAGGGTTCATCTGGTGAGCCATCAATAATTGAAGAATATCTGCTCG
TCCATCAATGACTGCAATGTGAGCTGCGGTTCTATAAGTTGAAGTTGAAA
AAGTTAAAGGATGGGAATTGCATATTGATACATTTATTCCATTTTGTCAT
AAGACTTGAATTTGAATGTTAACAATGTTATCTTTTTCGGCAATTGGATA
TGCGATTTCCTCAAAAGCCCTGGAGAGCTATCAATATAGGAGATTATCTT
CCAACTAAAGCCAAAACAAAGCAGATATAAGTAGAAAATAATGTTGTTGC
AATCACTTACCGCCCGTTGCCTTCTCTGGCGTTCACATCGAGTCCTTGGT
GCAACATGTAATCGATACACTTCAGAACAACGATGTGTTTATTGTTCATC
AAAGCCATATGTAGAAAGCTCATTTCGCCCAATCTGCTTTCAGTCTGTGA
AGAAAATTGgatattgaaatttcaataagtTTCAAGTCAACATACTATTC
CATTACATTAAAATAGCTAAGATAAGAGCCTAGAAGACAAATTTTTCTGG
AGTGTTATAAGCAGACTTTGAACAATGTTAAGTGGAAGAAATTTGCCTCA
ATGCCTCTTGGTGATAAACATGTATATCGAAGATGTCATTATGATTCAAT
CTAGAACCTAGGCCTCCCAAAGGGAGGGTGCGTGCGGTGTATAACTTACG
TTTGTTCTTAGTGAGACGTCCCACAGAAGTTTGAACATCTCGAAGCGTTC
ATCACCATAGAAATGCAATAAATAAGTTAAAGCATCGCGAGAATCTTGTG
CCTTGATACGTGTGTTAGCGCCTGCTTTGATCAACGCTTTGACGCACTCG
ATGGAACCGACTTCCATGGCCTAAACGAGAGAAAGTTCATCATATGTGTT
AATATGGTCATTGTATAGTGTATAGCCGGCACTCGAGAACACACTCGATT
TTTTTATGTTAACTGGTGGAGCCAGAATcaccgaaaagagtttacatgTT
ATACGATCAATTGAATCTCCATTGAAAATACAGCTCAAAATCTCGGACAA
CGAATATGTCACAAAATTCACTGATGTAGAAGAATGTTCCTAGCTAATGG
AATTGATCTTTATTCATAATTCTCactaaaaaaaaaacctgtcttaagaa
aacctttaaagttaCTCGGTTTTAACACCGTCAAACATAAATGACCAGTC
ACTTACTTTATAGAGTGGAGTTTTGCCATGGTTGTCTTGCTTGTTGACAT
CGACACCAGGACATCTCAATAAGATATTTAAAGTTTTAATGCATCCCCAA
GAAGCGGCGAAGTGCAGTGCGGTCCTGTGAAAGTGAAGAGAGACACATTA
AAAGATATAGTCCccatggatataaaattaccTCAAATTAGAGTGCGAAT
ACGATAAATGATGCTCAAAAGCTTCTTCGTGTGAACAGTCCAAAATTAAT
ACAGTCAACTCGCTTTagttcgaacttctattatttgaatctttctgtaa
tttgaactaAAATATTGTTCCCTTTTGGTTGAAAAGTAGTTTAatttact
ctctgtaattcgaatatttctccGATTTGATAACATTTTTGGTCCACCGA
AGATCGAATTAGACAGAGAGAAAGTCAACCGTATTAACAATTTTTATCAT
CCTGGGACAAACCAGGCGAGTAAACCTTTTGGCTTTGTTTTATAATTGTA
GCATAAGACTACTCTGCTTTGTATTTTAACCCTTCTAGCTTACTCATCAA
ATTCTTAGAACTATCTTTCATATTTTAGTCCATCATTTTACCTCTTTTGT
GCGTCAACTCTGTTGATTTTCTGTTGAAACTTATCTTCCTTCAACACCTT
ACGTAATTTCTTCAATTTGCCTTTCCAGGCGAATCTAAAAGTAGAATAGt
agaaagattgaaaatgaatctTTATTCGTATTTGTGTTTGAATTTTCTTT
GGTCTGTCTCTACCTGGAACCGACCCCACATCTATACAGAATTTCTAAGG
TTTTGCGTAGAATCTTTCTCAAAAGAGACAATATATAACAAAGATTGTAT
GATTGTACTGCTTTAAACGGTGTGAATTTTTGTGTACAGAATAGCAAAGC
CAAAATTGACTTTCATCAACGAAGTTTTTTTGTCTACCAtagtaaaaaga
aattaaaagaatgatTTGTCATTCAATAACGGACATACCTCAAAATAGCG
GAAAGTTCCTCCTCTTTTACTGTCCAATTAGGATAACTGCCTTCTTGAAT
TTTTCGTCGGACGCGCGGCTCTTCGACGTAACGTGGTGGTACACCGTAAT
CATACGCGTTATCGATCAAGAACTTGCAATACGCATCTGCAGACATACGG
TGACCGGCACCTTCGTCAATCGTCAACGCGTTCGCGACTTCGTGACGAAA
CTTCTCCATCAATTCTTCTGTGTTCTCACGGCGTTCATCTAACGTCATTG
CGGACGCTTCGTAACGTCGATGTTTCGGAACCGGAACGATTGTCCGGTTT
CCAATAAATAAGCCGGTTTGTTTTTCGCGTTCGGCTTTCTTTTTCTCATG
TTGTCGCCTGAGATCAGCGTCAAACCTTTTGCTCAGGTTATAGAAAGCAC
TTTTTCGTTCTTTGCCTGTTTTTTGTGGTACGTAGACCGTGGCTCTCTTG
ACGGAAGCATTGACTTGCGCTACAGCTTTATTTACTTTGTCGTTGTATGT
TTCTGGATGGACAGAATATTTGATTGGAAGCTGTGGCAAAACTTCTTTTC
GCTCACTCGCTTGATCTGTGAAACCAAAAAGTAACGCAAAATGTTTAGAT
TATTGACAGTGACCTTCTTAGGAGACACTTTAAACGTTTCTCATTTAAGT
TTAGATACCactaatttttctttgaaacttaAAAATTGCGGGGTATGTTA
TTTTAACAACACAATGAAAAGGTCTCCTCACCTTTATTTTGCTTGGCAGA
TTTGGCAGCTTCTcgtttctttttcaagttttcttgaaatttatctAACG
TCTTTTGGTCTTCCTCGTCCATCTCATGAAACAACTTGCAACCGTTGCTC
AATTCTCGATCCTTTACTGGTCCATGTTCATCTGAAAGTCCATGTCCTCC
GAGATAATCGTTAACAATCGCACGGTAATGCTTGACACGTTCACCAGACA
AAAGTCCTGGGTCCATGATATTTGTAATACGCTCAACTTCAGTCAAACTT
CGGCGAACGGAATCGAACTGCATGAAACGCATCATGGTTTTATCCAAAGC
CTCCTCGCTAATGGTGGAGTCCAATTTCCTCAACTCATCCTTAAGCTCTG
GAGTGCACAGCTCCAAGCATTCTTTAAACACGACTCTGGCTTTCCATTGA
GCTTTAGCCTCCATTTCGACTTCTTTTAGATGTTTCAATTCAACATTGAC
TTCTGATTGAACCTCGGGCATTCCTGATGACTCAGGGTATTGCAAGGAAG
ATGTCTTCATTCGTTTCTCAGATGGAGTTGGTCGTAAGTACAATGATGTG
CTTGGTGCAACTTTCTTAGGTTCAAGGTCATTCATGTATCGAGAGAATCT
CCTTTTATGATTTGATGATACCAATGTTGGTTCTTGTGATATTTTTAAAC
ATCCAAAGACAGTAGAGTTTGAGGATCTAGATAAATTTGGCTTACTATCT
GCCATGGCTCCACTTGTTAGACAGTTCTCATAGAAATTAACGTTGGGTTT
GATGCATTGCATGGATTTCCGTCGACCCCCGCTCAAATTGATGCGGTTCT
CACGCTCTGTGGAAATAATATTAAAGCATAATCAAGTTTATTTTGGTCAC
TTTGCTGTGAAAGAATCTGAACTGATGTGATTTCAAGACGTCTGAGCCGT
CTTGTTCTCGACCCAACGGAACTTGGGAAATCATGCAAATTATTCGACAG
CGTAAATGGATTTCATTCGAGAAAAATAGCTCCTATTCACTCCTAAGAAA
AGCAAAGAAATTAAACAACTTACCCATGATTTGTTCAACACGTTTCTCCA
TCTCTTTTACGCGACTTTGCTTCTTAGCGTAATGTTGTTTTTCAGGCGCG
TTAAAGCAGCTTTCCCACTCTCCCTTCTCTTGCTTTTGATTCAAAAGGAA
GGATCTCTCTTGAATCACCTGTTCAACGACATCCCGCTCCTCTTGCCAAA
GACCCAAGTCTTGGCACGGCaaaacaaaaacctttaaaGAGTTCCTCATT
TTTATGACGAACTGatggtttttattttgaaaaatctaaattctcTGTTC
CTGCAACAGAGTCTggttgatttttgattgaattgacttcttttaatcca
attaaaatatattgcacTATAAATCCAACTCAAAAAgctcttttcaaact
tttacgGCTTGATAGGTTGGGTTTTCGAACGAAACTGGATTGAATTCATA
AAAGTCGCATTCTTtatattatttgacgtcaataagtttttgtgacgtca
atttttgatatCTTAAATCAATTTCATCGAATTTTGGTATTTTCCTATCG
CGAAAGTAAGTCTTTATTGATCAATACGGCGAAAgtctaaaaaaaatatt
tcttgaaaatagttttataaaagatatttcaggatgattttaagataaga
attttaagcgatttcaatagattttgattgtAATCAATTTTTACAGAAGT
TGGTGAAtaacaaaaaatcgaaaaatagctTCATTCCGATCTTGAATTCA
AAAGTATTTCATTTTATTCTCTTTATCTCTTGCAGGTGATTTGTTAGCAG
CGATCGTTCGTGATTTCGGATCATTTGCAAACATGAAAGAACAATTGACG
AATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGTAAGTGC
TGGATAACTAGTTTTTGTGCGAAGAAGTCGCTTCGCTTTTTTCGTTTTGT
TATAAATTCACGTAAATTCAAACCCGTGAAGCACAATGTATCGCGTAtaa
tattaatatattttattggcccttttacgccggccctaatttaacgcggg
ccccttttacgccaaaatttgtaaaaatggctacttatACTTCAAATTCG
taaataatgtttaaaaaattcgGTAGTAAATTGTTGAAAATCCCATTCAA
AATTACTGATTTTCGTGTAAGGTCTTAGATATGGATAATTTTtgtcttcg
aatcatacctaaaatcctttaaattgaaaaataatgataGAAAATGAACG
CcacttttaggtaaaaattgcaaaatcttggcACTTATTACGCCACgtgc
ccaaaaataacgccaataaagggccggcgtaaaaagggccgataaggtaa
gtcTTTGAGAACGAGGTTTGCAAttattttatgcattttcgagaagagtg
tattcgcGAAAATTGCTTTCCTTAAAAatggggggggtggaggatataac
aattttcagtgatatACCCctcggacaaagtgacttttggctcCCCGtac
aattttgatgattttcctaccacctggacaatatatcctccaccccccat
gtacggatattttctggaagagcccatttcgtCGGTTTTGTTATTAAAAT
ATTAGTTTGGCCATCTCTTTGTAACACTTCTTTCCTTGCCAACCGACAGG
GTTATGATAAAAAGACTTCGATGTTAACAATCGATGCCATGGCAAACCAA
GACCCTCTACAATCGACCACTGGTAAGGAAATTGCATTAGTATCTTTTAC
AGACATTCATAAATTTTTTAAGTATGTTTAAAGTTTTAAGCAAAATGAGA
CTTAATTTTCCAGCTTTATTATCCttggctacgtcatatcttccttcgtt
tccagcgtaaaactcctactcgagtaaggcctaaaagcctggagctgtat
aTTATGTAGACTATATTATCCCTGAAAAttactgaaataaaaattatgat
agAAAATGATGCTAAAACTACTTTAAACAGGTCATTCAAGAAAATCAATG
ACATTAAATTAACCATTGTTAACCCTTAGTGTCAAATCGCCACAGCCAGG
ATACCCATCAAAATAATATCATTCATTCCGTTTCTTTATTTCAGGACGTA
TCCCGTTGCTTGGTATTGACGTTTGGGAACACGCTTATTACCTACAGTAT
AAGAACGTTCGTCCGGATTACGTCAAAGCCATCTTCGATATTGTCAACTG
GTCAAATGTATCTGAACGATACGAGAACGCTATGTGATTGTAGAGAAAGA
ACTTAAATTACTGTTTTCATTTCCTGGCTGGATTGAATGACCAGGTCAAG
GGTAatctcttcaaaaaattttgaaaatccaggtctggatcaatttttgt
aaaaaactaaaTATGAcgaatttaactttttttttaatttacgaattaaa
atttcttcattagaaATTTTAGAAAGAATATATTTTTAACAACTAGATAT
GTCAAAATATATTTCGGTTACTCTCTCCCCACCCATTGTCTGAACAAATA
CAAATACAAGGAAATGCTGCATTGAATTATCTTTCAGATTACAATTCGGT
TGAGACCTCTATGCAAACTGTTTGTCTATCTATGACTTGTGACGTAGAag
acattttttcaaataaagcctCGTCCCGTTAATGAAACAATGTTTTTGGT
AACATGACTTATTATCAAACTTTCTTTTAGTTTATGCTATCTGGTCTTCA
TAGGAAAGTCTTTCTGATTCTGATATTACTAATATGTTGCTCTAATATat
tataaaatgttttcattttacaGAGACTTAAtaattaaaacataaaaatg
cTATCGACAGTCGCCCGAAACACGCGTGGTGCACTTTCAAAACAAGCTCT
GCAAACAGTGCAAGTTGCATCAAAACACACTGAATACTCATCATTGCAAC
CAATCATCCCTGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAA
ACGTACGTTAATAATTTGAACGCCGCGGAAGAACAATTACAAGATGCTCT
GTCTCAAGGCGAGTAATGTCATTTAATCTCACAGATTCTACTTcaagatt
ttcattaaattcaACCTGTTCAATTCAAACTGGACCGATTGGGTCAattc
tttctgtaattcgaattagGCCCCCTTTGCTTAAAAGTAGTATAAAAATA
CTCCCTATTCCAAATCTTTCTATTATTTAATAGAAGTCTTGGTCCCTTGA
TGGAATTATAGAGGTAGGTATTTAAACCATCTTTTACTTGAACTTTTTCA
TTGGTTGATTGGCATCTTATTTCTTCAGGCGACGTACCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00041041-exon-sc0002676-1491911889:7073..7127 | TCONS_00041041-exon-sc0002676-1491911889:7073..7127 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1510915933:7073..7127 | TCONS_00041041-exon-sc0002676-1510915933:7073..7127 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1575043694:7073..7127 | TCONS_00041041-exon-sc0002676-1575043694:7073..7127 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1491911889:15915..15980 | TCONS_00041041-exon-sc0002676-1491911889:15915..15980 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1510915933:15915..15980 | TCONS_00041041-exon-sc0002676-1510915933:15915..15980 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1575043694:15915..15980 | TCONS_00041041-exon-sc0002676-1575043694:15915..15980 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1491911889:16251..16265 | TCONS_00041041-exon-sc0002676-1491911889:16251..16265 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1510915933:16251..16265 | TCONS_00041041-exon-sc0002676-1510915933:16251..16265 | Clytia hemisphaerica | exon |
| TCONS_00041041-exon-sc0002676-1575043694:16251..16265 | TCONS_00041041-exon-sc0002676-1575043694:16251..16265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002676 | supercontig | sc0002676:7073..16265 + |
Blast
The following BLAST results are available for this feature:
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