|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041040 ID=TCONS_00041040|Name=TCONS_00041040|organism=Clytia hemisphaerica|type=transcript|length=640bp
GTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATG
AAAGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGG
ATGGCTGGGTTATGATAAAAAGACTTCGATGTTAACAATCGATGCTATGG
CAAACCAAGACCCTCTACAATCGACAACCGGACGTATCCCGTTGCTTGGT
ATTGACGTTTGGGAACACGCTTATTACCTACAGTATAAGAACGTTCGTCC
GGATTACGTCAAAGCCATCTTCGATATTGTCAACTGGTCAAATGTATCTG
AACGATACGAGAACGCTATGTGATTGTAGAGAAAGAACTTAAATTACTGT
TTTCATTTCCTGGCTGGATTGAATGACCAGGTCAAGGGTAatctcttcaa
aaaattttgaaaatccaggtctggatcaatttttgtaaaaaactaaaTAT
GAcgaatttaactttttttttaatttacgaattaaaatttcttcattaga
aATTTTAGAAAGAATATATTTTTAACAACTAGATATGTCAAAATATATTT
CGGTTACTCTCTCCCCACCCATTGTCTGAACAAATACAAATACAAGGAAA
TGCTGCATTGAATTATCTTTCAGATTACAATTCGGTTGAG Run BLAST on NCBI protein sequence of TCONS_00041040-protein >TCONS_00041040-protein ID=TCONS_00041040-protein|Name=TCONS_00041040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
DLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGWLGYDKKTSMLTIDAMA
NQDPLQSTTGRIPLLGIDVWEHAYYLQYKNVRPDYVKAIFDIVNWSNVSE
RYENAM Run BLAST on NCBI transcript from alignment at sc0002676:4808..15526+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041040 ID=TCONS_00041040|Name=TCONS_00041040|organism=Clytia hemisphaerica|type=transcript|length=10719bp|location=Sequence derived from alignment at sc0002676:4808..15526+ (Clytia hemisphaerica)
GTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATG
AAAGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGG
ATGGCTGGTAAGTGTTGGATAAATAGTTTTTGCGCGAACAATTCTTCGCT
TTTTTCGTTTTGTTATAAAATCACGTAAATTCAAACCCGTGAAGCACAAT
GTATCGCGTATAATATTGATATATcttattggccctttttacgccggccc
taatttaacgtgGGCCCCTTTTACGCGGGCCCTTATTACACCACAgtcta
attttgggcttaggccaattagggccgttaataacgccaaaatttgtaaa
aatggctacttatacttcaaattagtaaataatcTTTAAAAGTTTCGGTA
GTAAATTGTTGAAAATCCCATTCAAAATTACTGATTTTCGTGAGGTCTTA
GATATGGATAATTTTtgtcttcgaatcatacctaaaatcctttaaattga
aaaaaaatgatagaaaatTAACGCCACTTTTAGGTAAAGATTGCAAAATC
TTGGCACTTATTACGCCACGTGCCCAAAAATATAGCGCCAataaagggcc
ggcgtaaaaagggccgataaggtaagtcTTTGAGAACGAGGTTTGCAAtt
attttatgcattttcgAGAAGAGTGTATGAGTGTATTCGCAAAAATTGCT
TTCCTTAAAAatggggggtggggggggggggggggatataacaattttca
gtgatatACCCctcggacaaagtgactttggCTCCCCGtacaattttgat
gattttcctACCACAtggacaaaatatcctccaccccccatgtacggaca
ttttctggaagagcccatttcgtCGGTTTTGTTATTAAATTACTAGTTTG
GATATCTCTTTGTAACACTTCTTTCCTCGCCAACCGACAGGGTTATGATA
AAAAGACTTCGATGTTAACAATCGATGCTATGGCAAACCAAGACCCTCTA
CAATCGACAACCGGTAAGGAAAATGCATTATTATATTTTACAGACATTCA
TAAATTTAagtatttgtaaagttttaagcaAAATGAGACATCATTTTCCA
GCTTTATTATCCttggctacgtcatatcttccttcgtttccagcgtaaaa
ctcctactctagTAAGGCCTTaaagcctggagctgtataTTATGTAGACT
ATTTTATCCCTGAAAAttactgaaataaaaattatgatagAAAGTGATGC
TAAAATTACTTTAAACAGCCCATTCAAGAAAATCAATGACATTAAATTgt
tcatttgaagtaataaaaatgatgcatccttaagaaaaagtaacaaaatt
ttttattactggttaacgaccaacgaaatcaaataagagcttgtaaaaac
tccatctcgtcccccAGAGCCAGGCTACCCATCAAAATAATATCATTCAT
TCCGTTTCTTTATTTCAGGACGTATCCCGTTGCTTGGTATTGACGTTTGG
GAACACGCTTATTACCTACAGTATAAGAACGTTCGTCCGGATTACGTCAA
AGCCATCTTCGATATTGTCAACTGGTCAAATGTCTCTGAACGATACGAGA
ACGCTATGTGATTGTAGAGAAAGAACTTAAATTAATGTTTTCATTTCCTG
GCTGGATTGAATGAGCAGGTCGAGGGTAatctcttcaaaaaattttgaaa
atccaggtctggatcaatttttgtaaaaaactaaaTATGATGAATTTagc
tcttttttttaatttacgaattaaaatttcttcattagaaATTTTAGAAA
GAATATATTTTTAACAACTAGATATGTCACAATATATTTAGGTTACTCTC
TCCCCACCCATTGTCTGAACAaatacaaatacaaagaaatgcTGCATTGA
ATTATCTTTCAGATTACAATTCGGTTGAGACCTCTATGCAAACTGTTTGT
CTATCTATGACTTGTGACGTAGAGCAAGCCTCGTCCCGTTTATGAAACAA
TGTTTTTGGTAACATGACTTATTATCATACTTTCTTTTAGTTTATGCTAT
CTGGTCTTTATAGGGAAGTCTTTCTGATTCTGATATTACTAATTTGTTGC
TCTAATATATTAtaagatgtttttattttgtaaagacttaataatcaaaa
cataaaaatgctATCGACAGTTGCCCGAAACACGCGTCGTGCACTTTCAA
AACAAGCTCTGCAAACAGTGCAAGTTGCATCAAAACACACTTTACCAGCT
CTCGATTATGAATACTCGTCATTGGAACCAATCATCCCTGAAGAAATTAT
GACCCTTCATCATTCTAAACATCATCAAACGTACGTCAATAATTTGAACG
CCGCGGAAGAACAGCTACAAGATGCTCTGTCTCAAGGTGATATGAGGAAT
GTCATTTAATCTAACTCACAGATTCTACTTcaagattttcattaaattca
ACCTGGACTGGACCGGTtgggtcaattttttctgtaattcgaattagGCC
CCCTTTGCTTAAAAGTAGTATAAAAAATACTCTCTATTCCAAATCTTTCT
ATTATGCAATAAAGTTTTGGTCCCTTTAAGATGGAATTATAGAGATAGGT
ATTTAAATCATCTTTTACTTGAACTTTTTCATTGGTTAATTGGCATCTTA
TTTCTTCAGGCCACTTACCAAAATTGATATGACTTCAACCAGCACTTCGA
TTCAACGGAGGAGGCCACGTCAATCACACCATCTTCTGGACCAATCTCTC
ACCCAACGGTGGAGGCGAACCCAAAGGTAAAGACACTCCTTATATGTCGG
CCAGATTGGTTATTCCGAGATTAGGTTCTTTAAATTCTAcctgattcgcg
aaaataaTTCTACGCGAAAATCTATCCACTTAAGGTGATCTGAAACTAAC
TGTCCTATGATTTAAAACGTGGTCGATTTATATATCTGGCCTATCCAAAG
ATAAAGGAGAAAAAATGGATATGAGACGAGTGAAGaagaattttattaaa
tttacgGTATAGGTATATATTTACAAGGTaaataattaagaaaaaaatcc
acgatgagaaaaataatttacaaacattgaaaaatgagaaaaaatctgca
aagaaaaaacaaaattatttataaaaaagctattacaaAATCCAaggtta
aaattttttgatttttatgaaaatattaaaaaaacgtttgataaaaaaat
atataaatatatagACACAACGGCTGATGAATGGAATCAGAGAAATCTAT
GTCCGAAATATTTGGTTCGGTATGCTTCTGCTTGTCGCCTGAAAACGTAA
GAAAAGAAGGACCAACGATTAAAATATTATACAAAAAGTCTAAGTCAAGt
gccaaaaaaaaggaaaacgtcctccatttcaaaacttttgagttTTGTCT
CagatacatttgctgttttacTGTATTGAAGGCATTGCCAGTTTAAGTTT
ACTTGTCCATCATCACATAGACACATTCTTGATTGACCACTTAACCAATC
AGGTCTAATTAATTAATAATGGAAACACAAAGAAATAAAGATTCTACTGA
AATCTACTTGCTTACATGTTGTGTTTGTTTGAACCATCACGAAGGTTGGA
TGCTTCTGCAATGTCACCTGGACCATCCTCGAAATAATTTTGCAAAAAGt
tgtaaattctgaaaaacgaagaaaatgaagaaatgagTTATCATCATTCG
TTTTTGATTTATAATGTCATCCAAACATTAATCGCGTAATTTTATCAATA
CAATATTCTAGCGATAAGTCAACACCATCTcgggcctcgttttcaaatga
aatgatTACTTCAAACGACATTTACACATGTAATATGTTTTCCCAAAAGA
ccgttttcaattttgatacagTACCGCAAACTCTTGAAAACATCAATTAT
GTCTGACGACATTGAAGTATCCTGGCAACAAGTCATTGAGAACGAGGTTG
GTAATTATTTAATCATTTTCGAGAAGAGGTGTATCCGATTGGAATTCGAT
AACTTGCTTGAACAAATACCGAAGAACAAAATCGAAAACGGTAAAATGAC
AACTACTTCGAATCAAATTCGACAATCAAATTTTAATTGATCAATTAGAT
TCGATTTAATTCGATTGGTCTGGTGTTCGTTTCTTTTCGATTGCAATCGT
GTGATAACGAATCGATTACACGGAGATGAACATAATCGATGACAGTCTTA
TTGTCGAGATCTTCGTAAAGAGGGTTCATCTGGTGAGCCATCAATAATTG
AAGAATATCTGCTCGTCCATCAATGACTGCAATGTGAGCTGCGGTTCTAT
AAGTTGAAGTTGAAAAAGTTAAAGGATGGGAATTGCATATTGATACATTT
ATTCCATTTTGTCATAAGACTTGAATTTGAATGTTAACAATGTTATCTTT
TTCGGCAATTGGATATGCGATTTCCTCAAAAGCCCTGGAGAGCTATCAAT
ATAGGAGATTATCTTCCAACTAAAGCCAAAACAAAGCAGATATAAGTAGA
AAATAATGTTGTTGCAATCACTTACCGCCCGTTGCCTTCTCTGGCGTTCA
CATCGAGTCCTTGGTGCAACATGTAATCGATACACTTCAGAACAACGATG
TGTTTATTGTTCATCAAAGCCATATGTAGAAAGCTCATTTCGCCCAATCT
GCTTTCAGTCTGTGAAGAAAATTGgatattgaaatttcaataagtTTCAA
GTCAACATACTATTCCATTACATTAAAATAGCTAAGATAAGAGCCTAGAA
GACAAATTTTTCTGGAGTGTTATAAGCAGACTTTGAACAATGTTAAGTGG
AAGAAATTTGCCTCAATGCCTCTTGGTGATAAACATGTATATCGAAGATG
TCATTATGATTCAATCTAGAACCTAGGCCTCCCAAAGGGAGGGTGCGTGC
GGTGTATAACTTACGTTTGTTCTTAGTGAGACGTCCCACAGAAGTTTGAA
CATCTCGAAGCGTTCATCACCATAGAAATGCAATAAATAAGTTAAAGCAT
CGCGAGAATCTTGTGCCTTGATACGTGTGTTAGCGCCTGCTTTGATCAAC
GCTTTGACGCACTCGATGGAACCGACTTCCATGGCCTAAACGAGAGAAAG
TTCATCATATGTGTTAATATGGTCATTGTATAGTGTATAGCCGGCACTCG
AGAACACACTCGATTTTTTTATGTTAACTGGTGGAGCCAGAATcaccgaa
aagagtttacatgTTATACGATCAATTGAATCTCCATTGAAAATACAGCT
CAAAATCTCGGACAACGAATATGTCACAAAATTCACTGATGTAGAAGAAT
GTTCCTAGCTAATGGAATTGATCTTTATTCATAATTCTCactaaaaaaaa
aacctgtcttaagaaaacctttaaagttaCTCGGTTTTAACACCGTCAAA
CATAAATGACCAGTCACTTACTTTATAGAGTGGAGTTTTGCCATGGTTGT
CTTGCTTGTTGACATCGACACCAGGACATCTCAATAAGATATTTAAAGTT
TTAATGCATCCCCAAGAAGCGGCGAAGTGCAGTGCGGTCCTGTGAAAGTG
AAGAGAGACACATTAAAAGATATAGTCCccatggatataaaattaccTCA
AATTAGAGTGCGAATACGATAAATGATGCTCAAAAGCTTCTTCGTGTGAA
CAGTCCAAAATTAATACAGTCAACTCGCTTTagttcgaacttctattatt
tgaatctttctgtaatttgaactaAAATATTGTTCCCTTTTGGTTGAAAA
GTAGTTTAatttactctctgtaattcgaatatttctccGATTTGATAACA
TTTTTGGTCCACCGAAGATCGAATTAGACAGAGAGAAAGTCAACCGTATT
AACAATTTTTATCATCCTGGGACAAACCAGGCGAGTAAACCTTTTGGCTT
TGTTTTATAATTGTAGCATAAGACTACTCTGCTTTGTATTTTAACCCTTC
TAGCTTACTCATCAAATTCTTAGAACTATCTTTCATATTTTAGTCCATCA
TTTTACCTCTTTTGTGCGTCAACTCTGTTGATTTTCTGTTGAAACTTATC
TTCCTTCAACACCTTACGTAATTTCTTCAATTTGCCTTTCCAGGCGAATC
TAAAAGTAGAATAGtagaaagattgaaaatgaatctTTATTCGTATTTGT
GTTTGAATTTTCTTTGGTCTGTCTCTACCTGGAACCGACCCCACATCTAT
ACAGAATTTCTAAGGTTTTGCGTAGAATCTTTCTCAAAAGAGACAATATA
TAACAAAGATTGTATGATTGTACTGCTTTAAACGGTGTGAATTTTTGTGT
ACAGAATAGCAAAGCCAAAATTGACTTTCATCAACGAAGTTTTTTTGTCT
ACCAtagtaaaaagaaattaaaagaatgatTTGTCATTCAATAACGGACA
TACCTCAAAATAGCGGAAAGTTCCTCCTCTTTTACTGTCCAATTAGGATA
ACTGCCTTCTTGAATTTTTCGTCGGACGCGCGGCTCTTCGACGTAACGTG
GTGGTACACCGTAATCATACGCGTTATCGATCAAGAACTTGCAATACGCA
TCTGCAGACATACGGTGACCGGCACCTTCGTCAATCGTCAACGCGTTCGC
GACTTCGTGACGAAACTTCTCCATCAATTCTTCTGTGTTCTCACGGCGTT
CATCTAACGTCATTGCGGACGCTTCGTAACGTCGATGTTTCGGAACCGGA
ACGATTGTCCGGTTTCCAATAAATAAGCCGGTTTGTTTTTCGCGTTCGGC
TTTCTTTTTCTCATGTTGTCGCCTGAGATCAGCGTCAAACCTTTTGCTCA
GGTTATAGAAAGCACTTTTTCGTTCTTTGCCTGTTTTTTGTGGTACGTAG
ACCGTGGCTCTCTTGACGGAAGCATTGACTTGCGCTACAGCTTTATTTAC
TTTGTCGTTGTATGTTTCTGGATGGACAGAATATTTGATTGGAAGCTGTG
GCAAAACTTCTTTTCGCTCACTCGCTTGATCTGTGAAACCAAAAAGTAAC
GCAAAATGTTTAGATTATTGACAGTGACCTTCTTAGGAGACACTTTAAAC
GTTTCTCATTTAAGTTTAGATACCactaatttttctttgaaacttaAAAA
TTGCGGGGTATGTTATTTTAACAACACAATGAAAAGGTCTCCTCACCTTT
ATTTTGCTTGGCAGATTTGGCAGCTTCTcgtttctttttcaagttttctt
gaaatttatctAACGTCTTTTGGTCTTCCTCGTCCATCTCATGAAACAAC
TTGCAACCGTTGCTCAATTCTCGATCCTTTACTGGTCCATGTTCATCTGA
AAGTCCATGTCCTCCGAGATAATCGTTAACAATCGCACGGTAATGCTTGA
CACGTTCACCAGACAAAAGTCCTGGGTCCATGATATTTGTAATACGCTCA
ACTTCAGTCAAACTTCGGCGAACGGAATCGAACTGCATGAAACGCATCAT
GGTTTTATCCAAAGCCTCCTCGCTAATGGTGGAGTCCAATTTCCTCAACT
CATCCTTAAGCTCTGGAGTGCACAGCTCCAAGCATTCTTTAAACACGACT
CTGGCTTTCCATTGAGCTTTAGCCTCCATTTCGACTTCTTTTAGATGTTT
CAATTCAACATTGACTTCTGATTGAACCTCGGGCATTCCTGATGACTCAG
GGTATTGCAAGGAAGATGTCTTCATTCGTTTCTCAGATGGAGTTGGTCGT
AAGTACAATGATGTGCTTGGTGCAACTTTCTTAGGTTCAAGGTCATTCAT
GTATCGAGAGAATCTCCTTTTATGATTTGATGATACCAATGTTGGTTCTT
GTGATATTTTTAAACATCCAAAGACAGTAGAGTTTGAGGATCTAGATAAA
TTTGGCTTACTATCTGCCATGGCTCCACTTGTTAGACAGTTCTCATAGAA
ATTAACGTTGGGTTTGATGCATTGCATGGATTTCCGTCGACCCCCGCTCA
AATTGATGCGGTTCTCACGCTCTGTGGAAATAATATTAAAGCATAATCAA
GTTTATTTTGGTCACTTTGCTGTGAAAGAATCTGAACTGATGTGATTTCA
AGACGTCTGAGCCGTCTTGTTCTCGACCCAACGGAACTTGGGAAATCATG
CAAATTATTCGACAGCGTAAATGGATTTCATTCGAGAAAAATAGCTCCTA
TTCACTCCTAAGAAAAGCAAAGAAATTAAACAACTTACCCATGATTTGTT
CAACACGTTTCTCCATCTCTTTTACGCGACTTTGCTTCTTAGCGTAATGT
TGTTTTTCAGGCGCGTTAAAGCAGCTTTCCCACTCTCCCTTCTCTTGCTT
TTGATTCAAAAGGAAGGATCTCTCTTGAATCACCTGTTCAACGACATCCC
GCTCCTCTTGCCAAAGACCCAAGTCTTGGCACGGCaaaacaaaaaccttt
aaaGAGTTCCTCATTTTTATGACGAACTGatggtttttattttgaaaaat
ctaaattctcTGTTCCTGCAACAGAGTCTggttgatttttgattgaattg
acttcttttaatccaattaaaatatattgcacTATAAATCCAACTCAAAA
AgctcttttcaaacttttacgGCTTGATAGGTTGGGTTTTCGAACGAAAC
TGGATTGAATTCATAAAAGTCGCATTCTTtatattatttgacgtcaataa
gtttttgtgacgtcaatttttgatatCTTAAATCAATTTCATCGAATTTT
GGTATTTTCCTATCGCGAAAGTAAGTCTTTATTGATCAATACGGCGAAAg
tctaaaaaaaatatttcttgaaaatagttttataaaagatatttcaggat
gattttaagataagaattttaagcgatttcaatagattttgattgtAATC
AATTTTTACAGAAGTTGGTGAAtaacaaaaaatcgaaaaatagctTCATT
CCGATCTTGAATTCAAAAGTATTTCATTTTATTCTCTTTATCTCTTGCAG
GTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATG
AAAGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGG
ATGGCTGGTAAGTGCTGGATAACTAGTTTTTGTGCGAAGAAGTCGCTTCG
CTTTTTTCGTTTTGTTATAAATTCACGTAAATTCAAACCCGTGAAGCACA
ATGTATCGCGTAtaatattaatatattttattggcccttttacgccggcc
ctaatttaacgcgggccccttttacgccaaaatttgtaaaaatggctact
tatACTTCAAATTCGtaaataatgtttaaaaaattcgGTAGTAAATTGTT
GAAAATCCCATTCAAAATTACTGATTTTCGTGTAAGGTCTTAGATATGGA
TAATTTTtgtcttcgaatcatacctaaaatcctttaaattgaaaaataat
gataGAAAATGAACGCcacttttaggtaaaaattgcaaaatcttggcACT
TATTACGCCACgtgcccaaaaataacgccaataaagggccggcgtaaaaa
gggccgataaggtaagtcTTTGAGAACGAGGTTTGCAAttattttatgca
ttttcgagaagagtgtattcgcGAAAATTGCTTTCCTTAAAAatgggggg
ggtggaggatataacaattttcagtgatatACCCctcggacaaagtgact
tttggctcCCCGtacaattttgatgattttcctaccacctggacaatata
tcctccaccccccatgtacggatattttctggaagagcccatttcgtCGG
TTTTGTTATTAAAATATTAGTTTGGCCATCTCTTTGTAACACTTCTTTCC
TTGCCAACCGACAGGGTTATGATAAAAAGACTTCGATGTTAACAATCGAT
GCCATGGCAAACCAAGACCCTCTACAATCGACCACTGGTAAGGAAATTGC
ATTAGTATCTTTTACAGACATTCATAAATTTTTTAAGTATGTTTAAAGTT
TTAAGCAAAATGAGACTTAATTTTCCAGCTTTATTATCCttggctacgtc
atatcttccttcgtttccagcgtaaaactcctactcgagtaaggcctaaa
agcctggagctgtataTTATGTAGACTATATTATCCCTGAAAAttactga
aataaaaattatgatagAAAATGATGCTAAAACTACTTTAAACAGGTCAT
TCAAGAAAATCAATGACATTAAATTAACCATTGTTAACCCTTAGTGTCAA
ATCGCCACAGCCAGGATACCCATCAAAATAATATCATTCATTCCGTTTCT
TTATTTCAGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCT
TATTACCTACAGTATAAGAACGTTCGTCCGGATTACGTCAAAGCCATCTT
CGATATTGTCAACTGGTCAAATGTATCTGAACGATACGAGAACGCTATGT
GATTGTAGAGAAAGAACTTAAATTACTGTTTTCATTTCCTGGCTGGATTG
AATGACCAGGTCAAGGGTAatctcttcaaaaaattttgaaaatccaggtc
tggatcaatttttgtaaaaaactaaaTATGAcgaatttaacttttttttt
aatttacgaattaaaatttcttcattagaaATTTTAGAAAGAATATATTT
TTAACAACTAGATATGTCAAAATATATTTCGGTTACTCTCTCCCCACCCA
TTGTCTGAACAAATACAAATACAAGGAAATGCTGCATTGAATTATCTTTC
AGATTACAATTCGGTTGAG Coding sequence (CDS) from alignment at sc0002676:4808..15526+ >TCONS_00041040 ID=TCONS_00041040|Name=TCONS_00041040|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0002676:4808..15526+ (Clytia hemisphaerica)
GATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATGAA
AGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGGAT
GGCTGGGTTATGATAAAAAGACTTCGATGTTAACAATCGATGCTATGGCA
AACCAAGACCCTCTACAATCGACAACCGGACGTATCCCGTTGCTTGGTAT
TGACGTTTGGGAACACGCTTATTACCTACAGTATAAGAACGTTCGTCCGG
ATTACGTCAAAGCCATCTTCGATATTGTCAACTGGTCAAATGTATCTGAA
CGATACGAGAACGCTATGTGAGATTTGTTAGCAGCGATCGTTCGTGATTT
CGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTGTTGCTG
TTCAAGGCTCCGGTTGGGGATGGCTGGGTTATGATAAAAAGACTTCGATG
TTAACAATCGATGCTATGGCAAACCAAGACCCTCTACAATCGACAACCGG
ACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCTTATTACCTAC
AGTATAAGAACGTTCGTCCGGATTACGTCAAAGCCATCTTCGATATTGTC
AACTGGTCAAATGTATCTGAACGATACGAGAACGCTATGTGAGATTTGTT
AGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATGAAAGAACAAT
TGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGGT
TATGATAAAAAGACTTCGATGTTAACAATCGATGCTATGGCAAACCAAGA
CCCTCTACAATCGACAACCGGACGTATCCCGTTGCTTGGTATTGACGTTT
GGGAACACGCTTATTACCTACAGTATAAGAACGTTCGTCCGGATTACGTC
AAAGCCATCTTCGATATTGTCAACTGGTCAAATGTATCTGAACGATACGA
GAACGCTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041040-exon-sc0002676-1491911889:4808..4914 | TCONS_00041040-exon-sc0002676-1491911889:4808..4914 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1510915933:4808..4914 | TCONS_00041040-exon-sc0002676-1510915933:4808..4914 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1575043694:4808..4914 | TCONS_00041040-exon-sc0002676-1575043694:4808..4914 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1491911889:5748..5820 | TCONS_00041040-exon-sc0002676-1491911889:5748..5820 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1510915933:5748..5820 | TCONS_00041040-exon-sc0002676-1510915933:5748..5820 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1575043694:5748..5820 | TCONS_00041040-exon-sc0002676-1575043694:5748..5820 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1491911889:15067..15526 | TCONS_00041040-exon-sc0002676-1491911889:15067..15526 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1510915933:15067..15526 | TCONS_00041040-exon-sc0002676-1510915933:15067..15526 | Clytia hemisphaerica | exon |
| TCONS_00041040-exon-sc0002676-1575043694:15067..15526 | TCONS_00041040-exon-sc0002676-1575043694:15067..15526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002676 | supercontig | sc0002676:4808..15526 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0004784 | superoxide dismutase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006801 | superoxide metabolic process |
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006801 |
superoxide metabolic process |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0004784 |
superoxide dismutase activity |
Blast
BLAST of TCONS_00041040 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 9.346e-49 Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 3
Query: 3 DLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGWLGYDKKTSMLTIDAMANQDPLQSTTGRIPLLGIDVWEHAYYLQYKNVRPDYVKAIFDIVNWSNVSERY 308
+LL AI RDFGSF KE+LT A+V VQGSGWGWLG++K+ L I A NQDPLQ TTG IPLLGIDVWEHAYYLQYKNVRPDY+KAI++++NW NV+ERY
Sbjct: 116 ELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
|
