TCONS_00041033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041033
Unique NameTCONS_00041033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041033 ID=TCONS_00041033|Name=TCONS_00041033|organism=Clytia hemisphaerica|type=transcript|length=228bp
atagaTATGAGACACCAGAAATAGCTGTCAACGCAGGAATGATTCTACGA
GAATGTATTCGTTACGAGCCTCTGGCTATTCTCATAATCAGATCCCCTAA
ATTTTATAACTTATTTAATTACGTGGAATTATCAACTTTCGATGTGGCCT
CAGATGCCTTCAGTACGTTCAAGGATCTTCTGAGACGTCACAAAATGGCC
AGTTCCAAATTTCTTGAAGAGGAGTATG
Run BLAST on NCBI

transcript from alignment at sc0002671:16982..18787-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041033 ID=TCONS_00041033|Name=TCONS_00041033|organism=Clytia hemisphaerica|type=transcript|length=1806bp|location=Sequence derived from alignment at sc0002671:16982..18787- (Clytia hemisphaerica)
ATAGATATGAGACACCAGAAATAGCTGTCAACGCAGGAATGATTCTACGA
GAATGTATTCGTTACGAGCCTCTGGCTATTCTCATAATCAGATCCCCTAA
ATTTTATAACTTATTTAATTACGTGGAATTATCAACTTTCGATGTGGCCT
CAGATGCCTTCAGTACGTTCAAGGTAAACACATAGTTATCTCTTAATCAA
TTTGCAAAAAGACAACAAATAAAAAATGTTATCTCATAATCAGCAACCCC
CAACCTAATTATTGTGATAGAGTCCCTACCTTCATTAGCAAAGTTGAGGG
TCAATCAATAAAGTGGCTTTTTTTAAACCTTTACTCTTTTTTTGAACCTT
TACTCTTTTGTTCTATGTTCTTTTGTTACGTTTGTTTGTTTGCATTGATC
TATTTTCTCAAGCTTTCATTCGCCTTCCAGTTTGTTTANCCCACTCTTTT
TTTGAACCTTTACTCTTTTGTTCTATGTTCTTTTGTTACGTTTGTTTGTT
TGCATTGATCTATTTTCTCAAGCTTTCATTCGCNGAAAACCATTCTCTAA
CTCTCAACGTACAAGCTTTTATGTCAATTTGAAATTAAGGATTTCAAAGA
AAAGGGTTGTGCTCATGTTGGAGGCTGTGAAAGACTTATATAGTTTTTTG
ATTTGAAAAATGCTGTCAATCTTGCCAATGCACAGAAATAAACTGATTTT
GAATGAGCACTGTTGAAAAGAAGCAAATAGTAATAAAATATATAGTAATA
TAACCTTTTTATATAGTAGGTTGATAATTCTTGGCTATTGTGTTTATTGT
TTCTTGTTTTTTTTCACGAAGGACTTTATTTTCTTNTCTTGGCTATTGTG
TTTATTGTTTCTTGTTTTTTTTCACGAAGGACTTTATTTTCTTTATAGAT
ATGAGACACCAGAAATAGCTGTCAACGCAGGAATGATTCTACGAGAATGT
ATTCGTTACGAGCCTCTGGCTGCTCTCATAATCAAATCCCCTAAATTTTA
TAACTTATTTAATTATGTGGAATTATCAACTTTCGATGTGGCCTCAGATG
CCTTCAGTACATTCAAGGTAAACACATAGTTATCTCCTAATCAATTTGCA
AAAAGACAACAAATAGAAAATGTTATCTCATATTCAGCAACCCCCAACCT
AATTATTGTGATATGGTCCCTACCTTCATTAGCAAAGTTGAGGGTCAATC
AATAAAGTGGCTAATAGACGCAACTCCAAGGGGTAATTTTTATTCCAATA
TTCATCACTCTTCATCCTTAGTTTTTCAGATATTTTGTATTTTGTAAAAA
AATCAAATTTCTAACTTTGCATGCTTTACCTGTCAGCAATAAACATGTTT
TCTGAATTTCTTTGAGATTATAAAACATTATTTTATTTATTTATCTTTTT
CACCAAAGATGGTATATATATTGGCAAGGCTCAATATGTGACCATTTTTC
TGTGGAAGTTCTCTGTCTTGAATTTCACGGGCTTTTTTTAAACCTTTACT
CTTTTGTTACTTTGTTTGTTTGTTACGTTTGTTTGTTTGCATTAATCTAT
TTTCACTTGTTCCATTTTCTCAAGCTTTCATTCACCTTCCAGTTTGTTTA
TTTGCAAAAAGCCTTCCTAGGACCTTCTGGTTGCGCAGGCCATAGATATC
ACAAGGCTCAAATTTATGAAAACTTAAGAATAACCATTTTATTAGATAAC
AAGATACTACATCAAATTTTTACTGTATTCTTATATTCCTCTTATTGCTA
GGATCTTCTGAGACGTCACAAAATGGCCAGTTCCAAATTTCTTGAAGAGG
AGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025057XLOC_025057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041033-exon-sc0002671-1575043694:18615..18787TCONS_00041033-exon-sc0002671-1575043694:18615..18787Clytia hemisphaericaexon
TCONS_00041033-exon-sc0002671-1575043694:16982..17036TCONS_00041033-exon-sc0002671-1575043694:16982..17036Clytia hemisphaericaexon
TCONS_00041033-exon-sc0002671-1510915933:18615..18787TCONS_00041033-exon-sc0002671-1510915933:18615..18787Clytia hemisphaericaexon
TCONS_00041033-exon-sc0002671-1510915933:16982..17036TCONS_00041033-exon-sc0002671-1510915933:16982..17036Clytia hemisphaericaexon
TCONS_00041033-exon-sc0002671-1491911889:18615..18787TCONS_00041033-exon-sc0002671-1491911889:18615..18787Clytia hemisphaericaexon
TCONS_00041033-exon-sc0002671-1491911889:16982..17036TCONS_00041033-exon-sc0002671-1491911889:16982..17036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002671supercontigsc0002671:16982..18787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.35319	2.32423	1.40205	0	0	0	0	0	0	0	0	0	16.9299	31.623	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00041033 vs. Swiss-Prot (Human)
Match: CAB39 (Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.472e-31
Identity = 49/74 (66.22%), Postives = 65/74 (87.84%), Query Frame = 3 
Query:    6 YETPEIAVNAGMILRECIRYEPLAILIIRSPKFYNLFNYVELSTFDVASDAFSTFKDLLRRHKMASSKFLEEEY 227
            YE+PEIA+N G++LRECIR+EPLA +I+ S +FY+ F YVE+STFD+ASDAF+TFKDLL RHK+ S++FLE+ Y
Sbjct:  134 YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHY 207
The following BLAST results are available for this feature:
BLAST of TCONS_00041033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAB394.472e-3166.22Calcium-binding protein 39 OS=Homo sapiens GN=CAB3... [more]
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