TCONS_00041031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041031
Unique NameTCONS_00041031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041031 ID=TCONS_00041031|Name=TCONS_00041031|organism=Clytia hemisphaerica|type=transcript|length=166bp
GTACTGAAGGCATCTGAGGCCACATCGAAAGTTGATAATTCCACGTAATT
AAATAAGTTATAAAATTTAGGGGATCTGATTATGAGAATAGCCAGAGGCT
CGTAACGAATACATTCTCGTAGAATCATTCCTGCGTTGACAGCTATTTCT
GGTGTCTCATAtctat
Run BLAST on NCBI

transcript from alignment at sc0002671:17728..18787+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041031 ID=TCONS_00041031|Name=TCONS_00041031|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at sc0002671:17728..18787+ (Clytia hemisphaerica)
GTACTGAAGGCATCTGAGGCCACATCGAAAGTTGATAATTCCACATAATT
AAATAAGTTATAAAATTTAGGGGATTTGATTATGAGAGCAGCCAGAGGCT
CGTAACGAATACATTCTCGTAGAATCATTCCTGCGTTGACAGCTATTTCT
GGTGTCTCATAtctataaagaaaataaagtccttcgtgaaaaaaaacaag
aaacaatAAACACAATAGCCAAGANAAGAAAATAAAGTCCttcgtgaaaa
aaaacaagaaacaatAAACACAATAGCCAAGAATTATCAACCTACTATAT
AAAAAGGTTATATTACTATATATTTTATTACTATTTGCTTCTTTTCAACA
GTGCTCATTCAAAATCAGTTTATTTCTGTGCATTGGCAAGATTGACagca
tttttcaaatcaaaaaactatataagtcTTTCACAGCCTCCAACATGAGC
ACAACCCTTTTCTTTGAAATCCTTAATTTCAAATTGACATAAAAGCTTGT
ACGTTGAGAGTTAGAGAATGGTTTTCNGCGAATGAAAGCTTGAGAAAATA
GATCAATGCAAACAAACAAACGTAACAAAAGAACATAGAACAAAAGAGTA
AAGGTTCAAAAAAAGAGTGGGNTAAACAAACTGGAAGGCGAATGAAAGCT
TGAGAAAATAGATCAATGCAAACAAACAAACGTAACAAAAGAACATAGAA
CAAAAGAGTAAAGGTTCAAAAAAAGAGtaaaggtttaaaaaaagccACTT
TATTGATTGACCCTCAACTTTGCTAATGAAGGTAGGGACTCTATCACAAT
AATTAGGTTGGGGGTTGCTGATTATGagataacattttttatttgttgtC
TTTTTGCAAATTGATTAAGAGATAACTATGTGTTTACCTTGAACGTACTG
AAGGCATCTGAGGCCACATCGAAAGTTGATAATTCCACGTAATTAAATAA
GTTATAAAATTTAGGGGATCTGATTATGAGAATAGCCAGAGGCTCGTAAC
GAATACATTCTCGTAGAATCATTCCTGCGTTGACAGCTATTTCTGGTGTC
TCATAtctat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025055XLOC_025055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041031-exon-sc0002671-1491911889:17728..17745TCONS_00041031-exon-sc0002671-1491911889:17728..17745Clytia hemisphaericaexon
TCONS_00041031-exon-sc0002671-1510915933:17728..17745TCONS_00041031-exon-sc0002671-1510915933:17728..17745Clytia hemisphaericaexon
TCONS_00041031-exon-sc0002671-1575043694:17728..17745TCONS_00041031-exon-sc0002671-1575043694:17728..17745Clytia hemisphaericaexon
TCONS_00041031-exon-sc0002671-1491911889:18640..18787TCONS_00041031-exon-sc0002671-1491911889:18640..18787Clytia hemisphaericaexon
TCONS_00041031-exon-sc0002671-1510915933:18640..18787TCONS_00041031-exon-sc0002671-1510915933:18640..18787Clytia hemisphaericaexon
TCONS_00041031-exon-sc0002671-1575043694:18640..18787TCONS_00041031-exon-sc0002671-1575043694:18640..18787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002671supercontigsc0002671:17728..18787 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00041031 vs. Swiss-Prot (Human)
Match: CAB39 (Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.521e-20
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = -3 
Query:    3 YETPEIAVNAGMILRECIRYEPLAILIIRSPKFYNLFNYVELSTFDVASDAFS 161
            YE+PEIA+N G++LRECIR+EPLA +I+ S +FY+ F YVE+STFD+ASDAF+
Sbjct:  134 YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFA 186
The following BLAST results are available for this feature:
BLAST of TCONS_00041031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAB394.521e-2066.04Calcium-binding protein 39 OS=Homo sapiens GN=CAB3... [more]
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