TCONS_00041029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041029
Unique NameTCONS_00041029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041029 ID=TCONS_00041029|Name=TCONS_00041029|organism=Clytia hemisphaerica|type=transcript|length=601bp
TttctttatataattttatgaATTCACTGTTCTTCCATATGTGGTTTGGT
ATGAAATCATTAATTAGCGTTTCTgtatttatttcattgttttgagATGG
TTTTGATGGAAAGTTCATGGTTAGTTTGATTGCAAGGTGGTCTCCTGTGT
TGATTGCATTTGGTTCTGTAACATGAGTgtcaataaataaatcaaacaGC
GATTGAGATATTAGAAAATGATCTATATAGGATTTGTGTGGGAGAGATGC
ATGATGATACGTATAAGCAGGACCATGTCCATGAGTGAGATCGATCGGCG
CAAGGTAGTTTTCAGTAATGAATTCTGATAAATAGTCCGATAGAGCATTG
GGGCTAGTAGATCTTTGTGTGATGGGTTCACTGGGACACGACTGGAAATC
TCCAAGGATAATACATTCGGAAGTTGCAGAGAATTGATTCAAAATACCCG
TTATTGAAGAAAGTTGGTTTTTGTAAGTCTCTTTACAGTCAGATTTTGAG
TTAACAGATTGGAGATATACTCCTGTGATGATTAATGATCGATTGTTGAG
TGTGGTTTTTATGGTAGTCATGAAGTCCTCCTGAAAAATGGTAGCTGTAT
T
Run BLAST on NCBI

protein sequence of TCONS_00041029-protein

>TCONS_00041029-protein ID=TCONS_00041029-protein|Name=TCONS_00041029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
NTATIFQEDFMTTIKTTLNNRSLIITGVYLQSVNSKSDCKETYKNQLSSI
TGILNQFSATSECIILGDFQSCPSEPITQRSTSPNALSDYLSEFITENYL
APIDLTHGHGPAYTYHHASLPHKSYIDHFLISQSLFDLFIDTHVTEPNAI
NTGDHLAIKLTMNFPSKPSQNNEINTETLINDFIPNHIWKNSEFIKLYKE
Run BLAST on NCBI

transcript from alignment at sc0002670:15600..16200

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041029 ID=TCONS_00041029|Name=TCONS_00041029|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at sc0002670:15600..16200 (Clytia hemisphaerica)
AATACAGCTACCATTTTTCAGGAGGACTTCATGACTACCATAAAAACCAC
ACTCAACAATCGATCATTAATCATCACAGGAGTATATCTCCAATCTGTTA
ACTCAAAATCTGACTGTAAAGAGACTTACAAAAACCAACTTTCTTCAATA
ACGGGTATTTTGAATCAATTCTCTGCAACTTCCGAATGTATTATCCTTGG
AGATTTCCAGTCGTGTCCCAGTGAACCCATCACACAAAGATCTACTAGCC
CCAATGCTCTATCGGACTATTTATCAGAATTCATTACTGAAAACTACCTT
GCGCCGATCGATCTCACTCATGGACATGGTCCTGCTTATACGTATCATCA
TGCATCTCTCCCACACAAATCCTATATAGATCATTTTCTAATATCTCAAT
CGCtgtttgatttatttattgacACTCATGTTACAGAACCAAATGCAATC
AACACAGGAGACCACCTTGCAATCAAACTAACCATGAACTTTCCATCAAA
ACCATctcaaaacaatgaaataaatacAGAAACGCTAATTAATGATTTCA
TACCAAACCACATATGGAAGAACAGTGAATtcataaaattatataaagaa
A

Coding sequence (CDS) from alignment at sc0002670:15600..16200

>TCONS_00041029 ID=TCONS_00041029|Name=TCONS_00041029|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0002670:15600..16200 (Clytia hemisphaerica)
AATACAGCTACCATTTTTCAGGAGGACTTCATGACTACCATAAAAACCAC
ACTCAACAATCGATCATTAATCATCACAGGAGTATATCTCCAATCTGTTA
ACTCAAAATCTGACTGTAAAGAGACTTACAAAAACCAACTTTCTTCAATA
ACGGGTATTTTGAATCAATTCTCTGCAACTTCCGAATGTATTATCCTTGG
AGATTTCCAGTCGTGTCCCAGTGAACCCATCACACAAAGATCTACTAGCC
CCAATGCTCTATCGGACTATTTATCAGAATTCATTACTGAAAACTACCTT
GCGCCGATCGATCTCACTCATGGACATGGTCCTGCTTATACGTATCATCA
TGCATCTCTCCCACACAAATCCTATATAGATCATTTTCTAATATCTCAAT
CGCtgtttgatttatttattgacACTCATGTTACAGAACCAAATGCAATC
AACACAGGAGACCACCTTGCAATCAAACTAACCATGAACTTTCCATCAAA
ACCATctcaaaacaatgaaataaatacAGAAACGCTAATTAATGATTTCA
TACCAAACCACATATGGAAGAACAGTGAATtcataaaattatataaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025054XLOC_025054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041029-exon-sc0002670-1491911889:15600..16200TCONS_00041029-exon-sc0002670-1491911889:15600..16200Clytia hemisphaericaexon
TCONS_00041029-exon-sc0002670-1510915933:15600..16200TCONS_00041029-exon-sc0002670-1510915933:15600..16200Clytia hemisphaericaexon
TCONS_00041029-exon-sc0002670-1575043694:15600..16200TCONS_00041029-exon-sc0002670-1575043694:15600..16200Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041029-proteinTCONS_00041029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002670supercontigsc0002670:15600..16200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05745	1.00177	0.781108	0	1.60392	1.119	1.21951	1.85744	0.584238	0.585927	0	0.831073	0.23667	0.0959297	0.563441	1.06801	1.0834	1.15896	0	0	0.387052	1.48812	0.243067	1.23796	1.89276	2.87881	0.217315	0.184117	0	0.179845
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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