TCONS_00041019 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041019
Unique Name	TCONS_00041019
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	662

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002668:16955..19135+
coding sequence from alignment at sc0002668:16955..19135+

transcript sequence

>TCONS_00041019 ID=TCONS_00041019|Name=TCONS_00041019|organism=Clytia hemisphaerica|type=transcript|length=662bp
CTGACTCCTTGACCAAAACTTTGTTCTGCAAAATACACTTGTGAGTCATC
ATTATGGGAAATATGAAAGTAAATGATAACAAGATGGTAGCCCAGCTATG
TACAACAAAGGAGAAATATCACGTGATTCGCACATATACTGGAATATAAT
GAGGAGTGACATACAAATACCTCAGATCGCTTTGATTAATTCAAATGATG
AACATgttGGAAGAAAGAACAGCACATATACCAATAGCAAGTTTTCTGAT
GAAGATTCTTCCGACTCGTCTAGCGATTCTGACAATGAAGAGACTGGAAG
AAAGAACAGCACATTTACAAATAGCAAGTTTTCCGATGAAGATTCTCTCC
AGACTTGTCTAGCATTTCTGACAATGAAGAGacTGGAAGAAAGAACAGCA
CATTTACAAATAGCAAGTTTTCTGATGAAGATTCTCCCGACTCGTCTAGC
GATTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATATACAAATAG
CAAGTTTTCCGATGAAGACTCTCCAGACTCGTCTAGCGATTCTGACGAAG
AGGTATTTTTCTAATTATGAGAGAACATGATCGATATCCTGAATACTGAC
ATTAGTGACAGTATTTACATAttaagagaactaattttggcgagtttAGC
CGAACTAATTTT

Run BLAST on NCBI

protein sequence of TCONS_00041019-protein

>TCONS_00041019-protein ID=TCONS_00041019-protein|Name=TCONS_00041019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MYNKGEISRDSHIYWNIMRSDIQIPQIALINSNDEHVGRKNSTYTNSKFS
DEDSSDSSSDSDNEETGRKNSTFTNSKFSDEDSLQTCLAFLTMKRLEERT
AHLQIASFLMKILPTRLAILTMKRLEERTAHIQIASFPMKTLQTRLAILT
KRYFSNYERT

Run BLAST on NCBI

transcript from alignment at sc0002668:16955..19135+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041019 ID=TCONS_00041019|Name=TCONS_00041019|organism=Clytia hemisphaerica|type=transcript|length=2181bp|location=Sequence derived from alignment at sc0002668:16955..19135+ (Clytia hemisphaerica)
CTGACTCCTTGACCAAAACTTTGTTCTGCAAAATACACTTGTGAGTCATC
ATTATGGGAAATATGAAAGTAAATGATAACAAGATGGTAGCCCAGCTATG
TACAACAAAGGAGAAATATCACGTGATTCGCACATATACTGGAATATAAT
GGTCTGGTGATGTTGAACTTCAAAGCCTTTTATACACCTATAGACCTTTT
ACTAATCAGGATGTCATGTTAAATAATTAAAACTTAAATGTGTCATATTG
TTTTATTGTTGGATTTAAAAATTCTATACCTCTCTTCAATTATTTAACCA
TTTTAATTGGAAGTAGAGAGAAAAATTCTAATATGCAAAAGTTATcctga
aatgaaagaaaatgtatttctttgaaattatgcttaaaaatttggaaaca
atCAACATTATACATTGACACTTCATCGATTGAGCTAAGGTATTTTACTC
AGAAAAGTGACTGTTTACCTGTCTTCTTTTATTTCAACAGAGGAGTGACA
TACAAATACCTCAGATCGCTTTGATTAATTCAAATGATGAACATGTaagt
aaatattttctggtACAATTTCTTTACTGCGTATTCATTATACATTTGTA
AAACATAAACTATAATTAAGTATAggtattgaaaattttaatctgTTTAG
TATCAAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggg
tacttaggcaaaaatggatgatgggtatgtgcggacggtaaaggtcggtt
tttacacctttcaaagtctctctaagggtcggaagatttttaggaaattt
tttgatttccagagaaaaatttgtactaaagtctctctaagggtattact
tttttcaaaaatcgaaaaaaagaattcaaaaagtctctaagggtcacctt
ttcagcaaaaatcagtctctaagggtcggtttttggaggtcctGTCATTA
CAtgcccctcattcgccaaccctagtaccccccgttTATCAAATACATTT
TAAAATCTGTACAAAATAATTAACAACGAGTGTGTACTTTTCATTATGGG
AACATGATCGAGATCTTGTGAGATAATCATAGAATATGTACCATCAGCTG
TAGTGGATAATTATAATATAAGATATTTGAAAGCAATGTAATGCAGTTTA
TTCATGGTTAAACAtcacacttttttttttgattctttctttttcaggtt
GGAAGAAAGAACAGCACATATACCAATAGCAAGTTTTCTGATGAAGATTC
TTCCGACTCGTCTAGCGATTCTGACAATGAAGAGGTATTTTTCTAATATT
ATGTGAACATTTTGATCGTCATGTGTCATCAGTGGTAGTGTATAGTTAAG
ATGTTTGAAAGCAATGTAATGCAGTTTATTCATGGTTAAACATCACACta
ataattttgattctttcTTGTTTCAGACTGGAAGAAAGAACAGCACATTT
ACAAATAGCAAGTTTTCCGATGAAGATTCTCTCCAGACTTGTCTAGCATT
TCTGACAATGAAGAGGTATTTTTCTAATATTATGTGCGCATTTTGATCGT
CATGTGTCATCAGTGGTAGTGTATAGCTAAGATGTTTGAAAGCAATGTAA
TACAGTTTATTCATGGTTATAAACATCACACTATTTTtttgattctttct
ttttcagacTGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTTTCTG
ATGAAGATTCTCCCGACTCGTCTAGCGATTCTGACAATGAAGAGGTATTT
TTCTAATATTATGTGAACATTTTGATCGTCATGTGTCATCAGCTGTATTG
TATAGCTAAGATATTTAAAAGCAATGTAATGCAGTTTATTCATGGTTACA
AACATCAcactatttttttttattctttctttttcagacTGGAAGAAAGA
ACAGCACATATACAAATAGCAAGTTTTCCGATGAAGACTCTCCAGACTCG
TCTAGCGATTCTGACGAAGAGGTATTTTTCTAATTATGAGAGAACATGAT
CGATATCCTGAATACTGACATTAGTGACAGTATTTACATAttaagagaac
taattttggcgagtttAGCCGAACTAATTTT

Coding sequence (CDS) from alignment at sc0002668:16955..19135+

>TCONS_00041019 ID=TCONS_00041019|Name=TCONS_00041019|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at sc0002668:16955..19135+ (Clytia hemisphaerica)
ATGTACAACAAAGGAGAAATATCACGTGATTCGCACATATACTGGAATAT
AATGAGGAGTGACATACAAATACCTCAGATCGCTTTGATTAATTCAAATG
ATGAACATgttGGAAGAAAGAACAGCACATATACCAATAGCAAGTTTTCT
GATGAAGATTCTTCCGACTCGTCTAGCGATTCTGACAATGAAGAGACTGG
AAGAAAGAACAGCACATTTACAAATAGCAAGTTTTCCGATGAAGATTCTC
TCCAGACTTGTCTAGCATTTCTGACAATGAAGAGacTGGAAGAAAGAACA
GCACATTTACAAATAGCAAGTTTTCTGATGAAGATTCTCCCGACTCGTCT
AGCGATTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATATACAAA
TAGCAAGTTTTCCGATGAAGACTCTCCAGACTCGTCTAGCGATTCTGACG
AAGAGGTATTTTTCTAATTATGAGAGAACATGAATGTACAACAAAGGAGA
AATATCACGTGATTCGCACATATACTGGAATATAATGAGGAGTGACATAC
AAATACCTCAGATCGCTTTGATTAATTCAAATGATGAACATgttGGAAGA
AAGAACAGCACATATACCAATAGCAAGTTTTCTGATGAAGATTCTTCCGA
CTCGTCTAGCGATTCTGACAATGAAGAGACTGGAAGAAAGAACAGCACAT
TTACAAATAGCAAGTTTTCCGATGAAGATTCTCTCCAGACTTGTCTAGCA
TTTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATTTACAAATAGC
AAGTTTTCTGATGAAGATTCTCCCGACTCGTCTAGCGATTCTGACAATGA
AGAGacTGGAAGAAAGAACAGCACATATACAAATAGCAAGTTTTCCGATG
AAGACTCTCCAGACTCGTCTAGCGATTCTGACGAAGAGGTATTTTTCTAA
TTATGAGAGAACATGAATGTACAACAAAGGAGAAATATCACGTGATTCGC
ACATATACTGGAATATAATGAGGAGTGACATACAAATACCTCAGATCGCT
TTGATTAATTCAAATGATGAACATgttGGAAGAAAGAACAGCACATATAC
CAATAGCAAGTTTTCTGATGAAGATTCTTCCGACTCGTCTAGCGATTCTG
ACAATGAAGAGACTGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTT
TCCGATGAAGATTCTCTCCAGACTTGTCTAGCATTTCTGACAATGAAGAG
acTGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTTTCTGATGAAGA
TTCTCCCGACTCGTCTAGCGATTCTGACAATGAAGAGacTGGAAGAAAGA
ACAGCACATATACAAATAGCAAGTTTTCCGATGAAGACTCTCCAGACTCG
TCTAGCGATTCTGACGAAGAGGTATTTTTCTAATTATGAGAGAACATGAA
TGTACAACAAAGGAGAAATATCACGTGATTCGCACATATACTGGAATATA
ATGAGGAGTGACATACAAATACCTCAGATCGCTTTGATTAATTCAAATGA
TGAACATgttGGAAGAAAGAACAGCACATATACCAATAGCAAGTTTTCTG
ATGAAGATTCTTCCGACTCGTCTAGCGATTCTGACAATGAAGAGACTGGA
AGAAAGAACAGCACATTTACAAATAGCAAGTTTTCCGATGAAGATTCTCT
CCAGACTTGTCTAGCATTTCTGACAATGAAGAGacTGGAAGAAAGAACAG
CACATTTACAAATAGCAAGTTTTCTGATGAAGATTCTCCCGACTCGTCTA
GCGATTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATATACAAAT
AGCAAGTTTTCCGATGAAGACTCTCCAGACTCGTCTAGCGATTCTGACGA
AGAGGTATTTTTCTAATTATGAGAGAACATGAATGTACAACAAAGGAGAA
ATATCACGTGATTCGCACATATACTGGAATATAATGAGGAGTGACATACA
AATACCTCAGATCGCTTTGATTAATTCAAATGATGAACATgttGGAAGAA
AGAACAGCACATATACCAATAGCAAGTTTTCTGATGAAGATTCTTCCGAC
TCGTCTAGCGATTCTGACAATGAAGAGACTGGAAGAAAGAACAGCACATT
TACAAATAGCAAGTTTTCCGATGAAGATTCTCTCCAGACTTGTCTAGCAT
TTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATTTACAAATAGCA
AGTTTTCTGATGAAGATTCTCCCGACTCGTCTAGCGATTCTGACAATGAA
GAGacTGGAAGAAAGAACAGCACATATACAAATAGCAAGTTTTCCGATGA
AGACTCTCCAGACTCGTCTAGCGATTCTGACGAAGAGGTATTTTTCTAAT
TATGAGAGAACATGAATGTACAACAAAGGAGAAATATCACGTGATTCGCA
CATATACTGGAATATAATGAGGAGTGACATACAAATACCTCAGATCGCTT
TGATTAATTCAAATGATGAACATgttGGAAGAAAGAACAGCACATATACC
AATAGCAAGTTTTCTGATGAAGATTCTTCCGACTCGTCTAGCGATTCTGA
CAATGAAGAGACTGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTTT
CCGATGAAGATTCTCTCCAGACTTGTCTAGCATTTCTGACAATGAAGAGa
cTGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTTTCTGATGAAGAT
TCTCCCGACTCGTCTAGCGATTCTGACAATGAAGAGacTGGAAGAAAGAA
CAGCACATATACAAATAGCAAGTTTTCCGATGAAGACTCTCCAGACTCGT
CTAGCGATTCTGACGAAGAGGTATTTTTCTAATTATGAGAGAACATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025048	XLOC_025048	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041019-protein	TCONS_00041019-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002668	supercontig	sc0002668:16955..19135 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56635	1.58427	1.5988	1.49004	6.44253	6.2594	10.6655	9.04935	3.80825	3.49814	3.56616	3.31603	2.15149	3.08072	0.6234	1.12652	0.96652	1.14649	1.09836	2.8955	1.49139	2.02394	0	0.876357	1.13704	2.74366	1.45215	0.859844	0.471409	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041019 vs. Swiss-Prot (Human)

BLAST of TCONS_00041019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041019 (transcript) - C. hemisphaerica