TCONS_00041018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041018
Unique NameTCONS_00041018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041018 ID=TCONS_00041018|Name=TCONS_00041018|organism=Clytia hemisphaerica|type=transcript|length=547bp
CAAGACTGCAAGATGGATGACAAGGAGAACAATcagAGGAGTGACATACA
AATACCTCAGATCGCTTTGATTAATTCAAATGATGAACATgttGGAAGAA
AGAACAGCACATATACCAATAGCAAGTTTTCTGATGAAGATTCTTCCGAC
TCGTCTAGCGATTCTGACAATGAAGAGACTGGAAGAAAGAACAGCACATT
TACAAATAGCAAGTTTTCCGATGAAGATTCTCTCCAGACTTGTCTAGCAT
TTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATTTACAAATAGCA
AGTTTTCTGATGAAGATTCTCCCGACTCGTCTAGCGATTCTGACAATGAA
GAGacTGGAAGAAAGAACAGCACATATACAAATAGCAAGTTTTCCGATGA
AGACTCTCCAGACTCGTCTAGCGATTCTGACGAAGAGGTATTTTTCTAAT
TATGAGAGAACATGATCGATATCCTGAATACTGACATTAGTGACAGTATT
TACATAttaagagaactaattttggcgagtttAGCCGAACTAATTTT
Run BLAST on NCBI

transcript from alignment at sc0002668:14833..19135+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041018 ID=TCONS_00041018|Name=TCONS_00041018|organism=Clytia hemisphaerica|type=transcript|length=4303bp|location=Sequence derived from alignment at sc0002668:14833..19135+ (Clytia hemisphaerica)
CAAGACTGCAAGATGGATGACAAGGAGAACAATcaggtaattatttttaa
tttgcaGTAACTATTCTTTGCTTACCAAAAACGACAGAAATCAGATAAAA
GCCATAAAAGATGCTTTATACTTGACAAAAATCCCTCATACTTCAGGTTG
TCTACATAATCTCAGGGTCAGAGGAAGAAAGTGAGAGCAAGGTCGACTTC
ACAAACCATGCTTTGGTATGTAAATTTCTTTCGGAGTCATTTTCATTTCG
AGTAATTTCTTTGGCCTTACATAATAAATTTTCTAGTCTTGTAGCATTAG
AATGAGTTGGTTCTGGTGGGGTTTGCATTGGAATGTGTTGGGGGCTGGGA
TGCTGGTGATGTTGCATTTAAATGTGTTGATTCTGGTGATGTTGCATCAG
AATGAGTTGATGCTGGTGATGTTGTATTGGAATGTGTTGGTGCTGGTGAT
GTTGTATTGGAATGTGTTGGTGTGTTGGGTGTTGGTGATATTATATTGGA
ATGTGTTGGTGTGTTGGGTGCTGGTGATGTTGTATTGGAATGTGTTGATG
CTGGTGATGTTGCATTTGAGTGTGTTGGTGTGTTGGAATGTATTGGTGCT
GGGGATGTTGCATTGGAATAAGTTGGGTGCTGGTGATTTTGCATTGGAAT
GTGTTGGTGCTGGTGATGTTGCATTTGAGTGTGTTGGTGTGTTGGAATGT
ATTGGTGCTGGGGATGTTGCATTGGAATAAGTTGGGTGCTGGTGATTTTG
CATTGGAATGTGTTGGTGTTGGTGATTTTGCATTGGAATGTATTGGTTCT
GATGATCTTGCATTTGAATGTGTTGGTGGTGGTGATGTTGCATTGGAATG
TGTTGGTGTGTTGGTTCTGATGATGATGCATTTGAATGTGTTGGTGCTGG
GGATTTTGCATTGGAATGTATTGGTGATTTTGCATTGGGATGTATTGGTT
CTGATGATTTTGCATTTGAATGTGTTGGTGGTGGTGATGTTGCATTGGAA
TGTGTTGGTGTGTTGGTTTTGATGATGATGCATTTGAATGTGTTGGTGCT
GGTGATTTTGCATTGGAATGTATTGGTGATGTTGCATCAGATTGTGTTAA
TGCTGGTGATACTGCATTGGAATGTGTTGGTGCTGAGGACGTTGCATTTG
AATGTATTGGTGATGTTGCATCAGAATGTGTTGATACTGGTGATACTGCA
TTGGAATGTGTTGGTGCTGGTGATGTTGCATTTGAGTGTGTTGGTGTGTT
GGAATGTATTGGTGCTGGGGATGTTGCATTGGAATAAGTTGGGTGCTGGT
GATTTTGCATTGGAATGTGTTGGTGTGTTGGAATGTATTGGTGCTGGGGA
TGTTGCATTGGAATAAGTTGGGTGCTGGTGATTTTGCATTGGAATGTGTT
GGTGTTGGTGATTTTGCATGGAATGTATTGGTTCTGATGATTTTGCATTT
GAATGTGTTGGTGGTGGTGATGTTGCATTGGAATGTGTTGGTGTGTTGGT
TCTGATGATGCTGCATTCGAATGTGTTGGTGCTGGTGATTTTGCATTGGA
ATGTATTGGTGATGTTGCATCAGAATGTGCTGATGCTGGTGATACTGCAT
TAGAATGTGTTGGTGCTGAGGATGTTGCATGGAATGTGTTGGTGCTGAGG
ATGTTGCATTTGAATGTATTGGTGATGTTGCATCAGAATGTGTTGATGCT
GGTGATACTGCATTGGAATGTGTTGGTGCTGGTGGTGTTTCATTTGAATG
TGTTGGTGTGTTGGTGATGTTACATTGGAAGGTGTTGGGTGCTGGTGATG
TTGTATTGGAATGTGTTGGTGTGTTGGTGATGTTACATTGGAAGGTGCGT
TGTATTTGTAGTGACTAAAAATCACTAAAGAATGGTGGATGGTCCTTGGA
CAAAAGTCAGTAATTAGGAGACAGTAATTTCACATGTGAAGACATTTCTT
CTGTAGCGTCATGATCAGAATAGAAGTGAGATAACTGGCTAAGTCCCCAT
GCACTTATATTGGGAATCTGAGATTTAGGGTCAAACTCATAGGCCCAGTC
CTTTAAAGCATGGGTAAGTAAGGCAAAAGAGGCTAATGACAAAAGGCAAA
ACACAGAAGCGACTGATGACTCCTGACTCCTTGACCAAAACTTTGTTCTG
CAAAATACACTTGTGAGTCATCATTATGGGAAATATGAAAGTAAATGATA
ACAAGATGGTAGCCCAGCTATGTACAACAAAGGAGAAATATCACGTGATT
CGCACATATACTGGAATATAATGGTCTGGTGATGTTGAACTTCAAAGCCT
TTTATACACCTATAGACCTTTTACTAATCAGGATGTCATGTTAAATAATT
AAAACTTAAATGTGTCATATTGTTTTATTGTTGGATTTAAAAATTCTATA
CCTCTCTTCAATTATTTAACCATTTTAATTGGAAGTAGAGAGAAAAATTC
TAATATGCAAAAGTTATcctgaaatgaaagaaaatgtatttctttgaaat
tatgcttaaaaatttggaaacaatCAACATTATACATTGACACTTCATCG
ATTGAGCTAAGGTATTTTACTCAGAAAAGTGACTGTTTACCTGTCTTCTT
TTATTTCAACAGAGGAGTGACATACAAATACCTCAGATCGCTTTGATTAA
TTCAAATGATGAACATGTaagtaaatattttctggtACAATTTCTTTACT
GCGTATTCATTATACATTTGTAAAACATAAACTATAATTAAGTATAggta
ttgaaaattttaatctgTTTAGTATCAAATATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNggggggggggggggtacttaggcaaaaatggatgatgggtat
gtgcggacggtaaaggtcggtttttacacctttcaaagtctctctaaggg
tcggaagatttttaggaaattttttgatttccagagaaaaatttgtacta
aagtctctctaagggtattacttttttcaaaaatcgaaaaaaagaattca
aaaagtctctaagggtcaccttttcagcaaaaatcagtctctaagggtcg
gtttttggaggtcctGTCATTACAtgcccctcattcgccaaccctagtac
cccccgttTATCAAATACATTTTAAAATCTGTACAAAATAATTAACAACG
AGTGTGTACTTTTCATTATGGGAACATGATCGAGATCTTGTGAGATAATC
ATAGAATATGTACCATCAGCTGTAGTGGATAATTATAATATAAGATATTT
GAAAGCAATGTAATGCAGTTTATTCATGGTTAAACAtcacactttttttt
ttgattctttctttttcaggttGGAAGAAAGAACAGCACATATACCAATA
GCAAGTTTTCTGATGAAGATTCTTCCGACTCGTCTAGCGATTCTGACAAT
GAAGAGGTATTTTTCTAATATTATGTGAACATTTTGATCGTCATGTGTCA
TCAGTGGTAGTGTATAGTTAAGATGTTTGAAAGCAATGTAATGCAGTTTA
TTCATGGTTAAACATCACACtaataattttgattctttcTTGTTTCAGAC
TGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTTTCCGATGAAGATT
CTCTCCAGACTTGTCTAGCATTTCTGACAATGAAGAGGTATTTTTCTAAT
ATTATGTGCGCATTTTGATCGTCATGTGTCATCAGTGGTAGTGTATAGCT
AAGATGTTTGAAAGCAATGTAATACAGTTTATTCATGGTTATAAACATCA
CACTATTTTtttgattctttctttttcagacTGGAAGAAAGAACAGCACA
TTTACAAATAGCAAGTTTTCTGATGAAGATTCTCCCGACTCGTCTAGCGA
TTCTGACAATGAAGAGGTATTTTTCTAATATTATGTGAACATTTTGATCG
TCATGTGTCATCAGCTGTATTGTATAGCTAAGATATTTAAAAGCAATGTA
ATGCAGTTTATTCATGGTTACAAACATCAcactatttttttttattcttt
ctttttcagacTGGAAGAAAGAACAGCACATATACAAATAGCAAGTTTTC
CGATGAAGACTCTCCAGACTCGTCTAGCGATTCTGACGAAGAGGTATTTT
TCTAATTATGAGAGAACATGATCGATATCCTGAATACTGACATTAGTGAC
AGTATTTACATAttaagagaactaattttggcgagtttAGCCGAACTAAT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025048XLOC_025048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041018-exon-sc0002668-1491911889:14833..14868TCONS_00041018-exon-sc0002668-1491911889:14833..14868Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1510915933:14833..14868TCONS_00041018-exon-sc0002668-1510915933:14833..14868Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1575043694:14833..14868TCONS_00041018-exon-sc0002668-1575043694:14833..14868Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1491911889:17445..17498TCONS_00041018-exon-sc0002668-1491911889:17445..17498Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1510915933:17445..17498TCONS_00041018-exon-sc0002668-1510915933:17445..17498Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1575043694:17445..17498TCONS_00041018-exon-sc0002668-1575043694:17445..17498Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1491911889:18252..18338TCONS_00041018-exon-sc0002668-1491911889:18252..18338Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1510915933:18252..18338TCONS_00041018-exon-sc0002668-1510915933:18252..18338Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1575043694:18252..18338TCONS_00041018-exon-sc0002668-1575043694:18252..18338Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1491911889:18481..18569TCONS_00041018-exon-sc0002668-1491911889:18481..18569Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1510915933:18481..18569TCONS_00041018-exon-sc0002668-1510915933:18481..18569Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1575043694:18481..18569TCONS_00041018-exon-sc0002668-1575043694:18481..18569Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1491911889:18712..18798TCONS_00041018-exon-sc0002668-1491911889:18712..18798Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1510915933:18712..18798TCONS_00041018-exon-sc0002668-1510915933:18712..18798Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1575043694:18712..18798TCONS_00041018-exon-sc0002668-1575043694:18712..18798Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1491911889:18942..19135TCONS_00041018-exon-sc0002668-1491911889:18942..19135Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1510915933:18942..19135TCONS_00041018-exon-sc0002668-1510915933:18942..19135Clytia hemisphaericaexon
TCONS_00041018-exon-sc0002668-1575043694:18942..19135TCONS_00041018-exon-sc0002668-1575043694:18942..19135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002668supercontigsc0002668:14833..19135 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.377276	0.19539	0	1.96394	0.0733511	1.41255	0	0	0	0	0.593608	0.10405	0	0.42373	0	0	0	0	0	0.534244	0.392696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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