TCONS_00041015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041015
Unique NameTCONS_00041015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041015 ID=TCONS_00041015|Name=TCONS_00041015|organism=Clytia hemisphaerica|type=transcript|length=424bp
TAATGATTTACATAAATAGGTAGTTCTAATAAATCTTGTATAAATGCATC
ATCGAACATTCAGAAGAAACTCTTGTGATGCCGCACCGTGTAGAGCAGGT
ACCTCGCTCGCCATACCAGGTTTTTGtcagtaaatggtcagtgttgaatA
TAATGCAAGATTTTGAATGAATTGTGTGACCAAGAAGGCAAACTTGGGTT
TAACAATAGAGTGTTAAGACCGTTTTCTcaggaataaaagaagaaaaaat
tgtcgaaaattcgcgctcgcttcgctcgcgtgcttcttttcaaaagattt
tccttCTAGGAGACGAAGGTCAAACTAGACGACCTTTTCTTGCACCACCT
CTTTGAAGCCTGAGACTTTCCAGTCCATGATTTTAGGCCAAGCCAATTTA
TCCTTGATAGACGGGTCTGCGACG
Run BLAST on NCBI

transcript from alignment at sc0002666:10262..10685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041015 ID=TCONS_00041015|Name=TCONS_00041015|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0002666:10262..10685 (Clytia hemisphaerica)
CGTCGCAGACCCGTCTATCAAGGATAAATTGGCTTGGCCTAAAATCATGG
ACTGGAAAGTCTCAGGCTTCAAAGAGGTGGTGCAAGAAAAGGTCGTCTAG
TTTGACCTTCGTCTCCTAGaaggaaaatcttttgaaaagaagcacgcgag
cgaagcgagcgcgaattttcgacaattttttcttcttttattcctgAGAA
AACGGTCTTAACACTCTATTGTTAAACCCAAGTTTGCCTTCTTGGTCACA
CAATTCATTCAAAATCTTGCATTATattcaacactgaccatttactgaCA
AAAACCTGGTATGGCGAGCGAGGTACCTGCTCTACACGGTGCGGCATCAC
AAGAGTTTCTTCTGAATGTTCGATGATGCATTTATACAAGATTTATTAGA
ACTACCTATTTATGTAAATCATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025046XLOC_025046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041015-exon-sc0002666-1491911889:10262..10685TCONS_00041015-exon-sc0002666-1491911889:10262..10685Clytia hemisphaericaexon
TCONS_00041015-exon-sc0002666-1510915933:10262..10685TCONS_00041015-exon-sc0002666-1510915933:10262..10685Clytia hemisphaericaexon
TCONS_00041015-exon-sc0002666-1575043694:10262..10685TCONS_00041015-exon-sc0002666-1575043694:10262..10685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002666supercontigsc0002666:10262..10685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165013	0.321827	0.747344	1.46232	2.00276	1.05507	1.2729	1.39029	0.973372	1.03344	0.66872	0.219795	1.09745	0.341913	0.468498	1.40776	0.371623	1.26967	2.8066	1.83556	0.319087	0.933838	0	0.344021	0.708668	1.10682	0.45253	0	0.732605	0.933011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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