TCONS_00041014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041014
Unique NameTCONS_00041014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041014 ID=TCONS_00041014|Name=TCONS_00041014|organism=Clytia hemisphaerica|type=transcript|length=943bp
GTGGCATTCATCAGGGCTATTTGCTTCTCGTTGTGGTGAAGGACGGTGGT
TCGGGAGATTCTTGTTATGGAAGTTCGAATTTAAAactgaaatttttaaa
ttcattatACCTGCCAAGATTTTAACATGACCAAACGAACGAAAGGAAAG
ACAGATATGGTGGAGGACCACAATGTGCTGTCTGGGTGGTATGGTATGGA
TTTTTCGTTTCGATCTAGTGGTGTTGCAGTTTTGACAAGTTTAAAAGttt
cattTATCGTTGATGAGCGAATCAACCCACTGGTTTTGGATGTCCCGGAT
CTATACCATTCTTGCTGGTCAAGTCTAGCCTGAGTTTACTATTAACATTG
TCGAAACCATCACCAGCATACAGGACCGATCTTTAACACTTTGGTATCGA
TTGCACGACCCCTACCTCGCCACGGTATGCGCCATAGAGGGAATGTCTTA
TAGAGCGTTGACGATTATGCTTGGAAAACAGATTACGATATACTGAAATC
TGTTCAAACGATGGCGAAATTCAAAGATCCTGGAAGCACTTTATTCGtat
ttttttagacttcaaAGCAAAACGTATGGTACAACCTTGGAATCTCTTCT
GTGGTCTTTTGGAAAACATGGTGCGGATTATAGCACTGTATAACAGAAAG
AATTTAGAGCCAAGTTAACCATGGTTGATGCTGATGCAGATGATCGTCAC
TGAATATTGATGCAGGATACGACAATGACGTCACAATACTtgtgcttatt
ttttacttaaaaggaaataaataaactctccgtcataaattttgaatcCT
CTCAGATCCGCCACTGCACTTACTTCTATAGCTTTTTTAGACCACTTTCA
AGGAATATTAAACATTTGAAGACCTCTTCNTACTTCTATAGCTTTTTTAG
ACCACTTTCAAGGAATATTAAACATTTGAAAACCTCTTTATAG
Run BLAST on NCBI

transcript from alignment at sc0002666:15585..18117-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041014 ID=TCONS_00041014|Name=TCONS_00041014|organism=Clytia hemisphaerica|type=transcript|length=2533bp|location=Sequence derived from alignment at sc0002666:15585..18117- (Clytia hemisphaerica)
GTGGCATTCATCAGGGCTATTTGCTTCTCGTTGTGGTGAAGGACGGTGGT
TCGGGAGATTCTTGTTATGGAAGTTCGAATTTAAAACTGAAATTTTTAAA
TTCATTATACCTGCCAAGATTTTAACATGACCAAACGAACGAAAGGAAAG
ACAGATATGGTGGAGGACCACAATGTGCTGTCTGGGTGGTATGGTATGGA
TTTTTCGTTTCGATCTAGTGGTGTTGCAGTTTTGACAAGTTTAAAAGGCA
ATTTTAGTGTTTTTAAGCTATAGATTTTCCTCTATTTAAGAGATCGTTTT
TTCTCAAAACAAGGCAACCTTCGACTTTAATCTAATTGTTTGATTTGCGC
TCTTGAAAAATCATGTCTTTCTCATACATTGAAAAAAATTGTGTCGTGAA
ACATTTATTTTTGACATTTCTTTAGGAAATTTAAATTGCTTTGTTTGTGG
CAGTTTTGGTAGTAAAAGCGAAATTAGCTTTTATTGGCAAGATGGTGCGA
AATGATATTTATTTTGGTGCTCACATACATCAATTGAATATTTTGTGAAG
CTAGATTTTTTTGTACCGTGAATGTTGGTTTGTGTGTTTGAAGTTAATAT
TTTTTTTGTTGGCCTTGAAAATACAAACTTAATTGTTCCTGATTAACATT
ACACACAAATGAAACCCATTATAGGGATTAAAGTAATTAACGATGAAAAT
TGTTTTGTCACTTGGAAAATCTTCTGTTTAAAATTTTATTGCAACACTCT
TTGAAAGAATTGTCAATGCTGAGCAGTGACATCTAGAACAGTGTTGTAAT
TCATTTTTGTTTTTATTTAAGATTGACAACACATTTTCAGGTTTGTACCA
AATGAAGCAATGGTCAGAGAGTTAAAAAGATTTTTGGGAAAAAGGATTTC
TGGTCGGGTTTTTGAAGGTTTAGTTTTTGTTATGATTTTTTTATGAATTC
TTGTTTAGGTTTGTGATTTTTTTATGAATTCTTGTTTAGGTTTGTGAATC
TGTTGTAAACCTATCATCATCTGTCAAAGTGTTCGATACACGTTTTTCAT
AAGAACATCCAAAATCTTTGAAGCCTTCGGATGTTTAAATTTTTGAGTTT
TAAACCTAAAAAAATTTTCTTAACATCGTTCTTATTTTCGCAATTTTGAG
TATTTTTGTCCATTTTCCTAAAAAAGCGAATTCTCAAAATGTTTTTAACT
TGTTCTTAATATTTCGGCAATCGAAGCCTTATGTTCTTATATAGTTTGTT
CTCATAAAAAAACGTTTATTTGTAAGGATTATTGTGCGTTTCACTTGTTG
CGTTGACATTTTATGTGTGTAATGAATTTGATAATTCATTATTACCTACT
TATGTTTTTTTATAAGAATATGCCCAAAGTTTTTGAGGCCTTCAGATGTT
CTTATTTTTTAAAATTTTAACCCGTAAATGTTCTCAACATGTTCTTATTT
TCACCACTTTAATGTATTCTTGTGCAATTTCGTAAGATATCGGTTTGTTT
TGGATTCCACAAGGCCTTAGAATATGTATGGTTCTTGATTTTTTGATTTT
AACCTTTTATACCTTATTTTTCAGTTTCATTTATCGTTGATGAGCGAATC
AACCCACTGGTTTTGGATGTCCCGGATCTATACCATTCTTGCTGGTCAAG
TCTAGCCTGAGTTTACTATTAACATTGTCGAAACCATCACCAGCATACAG
GACCGATCTTTAACACTTTGGTATCGATTGCACGACCCCTACCTCGCCAC
GGTATGCGCCATAGAGGGAATGTCTTATAGAGCGTTGACGATTATGCTTG
GAAAACAGATTACGATATACTGTAAGTTTACATCCTTTTTTTGGGATATT
CTGATGGACGTTTGGTAGTGTTCTACTACTAAGTTAAAGTATAGATGTTT
ATAGTGTTAATTGAAACGGCAGTTCTTCCAGTTTAATGCTTTCTACGTAC
ATGGTAGATTCTGTTATTAAGTTGTCCTTGTAAACTTCGTCAGCTATATC
ATTGTTTTAAGTTTTAAAGGTTACTCAGCTTGATCGTCTATGATTATTAT
TTTCAAAACAGATTTGTTCTCTCGCTTTTTTCAGGAAATCTGTTCAAACG
ATGGCGAAATTCAAAGATCCTGGAAGCACTTTATTCGTATTTTTTTAGAC
TTCAAAGCAAAACGTATGGTACAACCTTGGAATCTCTTCTGTGGTCTTTT
GGAAAACATGGTGCGGATTATAGCACTGTATAACAGAAAGAATTTAGAGC
CAAGTTAACCATGGTTGATGCTGATGCAGATGATCGTCACTGAATATTGA
TGCAGGATACGACAATGACGTCACAATACTTGTGCTTATTTTTTACTTAA
AAGGAAATAAATAAACTCTCCGTCATAAATTTTGAATCCTCTCAGATCCG
CCACTGCACTTACTTCTATAGCTTTTTTAGACCACTTTCAAGGAATATTA
AACATTTGAAGACCTCTTCNTACTTCTATAGCTTTTTTAGACCACTTTCA
AGGAATATTAAACATTTGAAAACCTCTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025045XLOC_025045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041014-exon-sc0002666-1575043694:17871..18117TCONS_00041014-exon-sc0002666-1575043694:17871..18117Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1575043694:16297..16543TCONS_00041014-exon-sc0002666-1575043694:16297..16543Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1575043694:15585..16033TCONS_00041014-exon-sc0002666-1575043694:15585..16033Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1510915933:17871..18117TCONS_00041014-exon-sc0002666-1510915933:17871..18117Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1510915933:16297..16543TCONS_00041014-exon-sc0002666-1510915933:16297..16543Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1510915933:15585..16033TCONS_00041014-exon-sc0002666-1510915933:15585..16033Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1491911889:17871..18117TCONS_00041014-exon-sc0002666-1491911889:17871..18117Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1491911889:16297..16543TCONS_00041014-exon-sc0002666-1491911889:16297..16543Clytia hemisphaericaexon
TCONS_00041014-exon-sc0002666-1491911889:15585..16033TCONS_00041014-exon-sc0002666-1491911889:15585..16033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002666supercontigsc0002666:15585..18117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.90859	4.74789	2.74054	2.64352	0	1.03016	0	0.746428	0	0.39931	0	0	0	0	0	0	0	0	0	0	0	0	3.12451	0.721639	0	0	0	0	1.79899	3.3794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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