TCONS_00041012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041012
Unique NameTCONS_00041012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041012 ID=TCONS_00041012|Name=TCONS_00041012|organism=Clytia hemisphaerica|type=transcript|length=363bp
AAAGAAGAAACGGTGTTTCAAGAGCAGAATTTCAAGGTGGAAGAATGACC
GAACCTTAAATTTCAATGTTGAAAACTATTTTGATCAAGAAGAGGAATTC
TTTATCATAACTCAAAAACTTAGTGGGCAACATACCAACTCAATCATTTT
CTCTCCTGACAAAGCTGATTTTCTCATCGCTAATGTCACTGGTTATCTTT
TGGAATGGAAACGAAAGAAGTTCAAGAATGAAATGCAAAACGTGTTTTTT
AAGATCATGCGAGAAAAAGTCTTGGAAGTGCGGCGAGAAATGTGCGAAGG
ATGTTTGGAGGACTACCCAAGTCAACTTCATCACTACTGTCTCACAACGG
AGACTAAGCAATT
Run BLAST on NCBI

protein sequence of TCONS_00041012-protein

>TCONS_00041012-protein ID=TCONS_00041012-protein|Name=TCONS_00041012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
KKKRCFKSRISRWKNDRTLNFNVENYFDQEEEFFIITQKLSGQHTNSIIF
SPDKADFLIANVTGYLLEWKRKKFKNEMQNVFFKIMREKVLEVRREMCEG
CLEDYPSQLHHYCLTTETKQ
Run BLAST on NCBI

transcript from alignment at sc0002664:18247..18609

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041012 ID=TCONS_00041012|Name=TCONS_00041012|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0002664:18247..18609 (Clytia hemisphaerica)
AATTGCTTAGTCTCCGTTGTGAGACAGTAGTGATGAAGTTGACTTGGGTA
GTCCTCCAAACATCCTTCGCACATTTCTCGCCGCACTTCCAAGACTTTTT
CTCGCATGATCTTAAAAAACACGTTTTGCATTTCATTCTTGAACTTCTTT
CGTTTCCATTCCAAAAGATAACCAGTGACATTAGCGATGAGAAAATCAGC
TTTGTCAGGAGAGAAAATGATTGAGTTGGTATGTTGCCCACTAAGTTTTT
GAGTTATGATAAAGAATTCCTCTTCTTGATCAAAATAGTTTTCAACATTG
AAATTTAAGGTTCGGTCATTCTTCCACCTTGAAATTCTGCTCTTGAAACA
CCGTTTCTTCTTT

Coding sequence (CDS) from alignment at sc0002664:18247..18609

>TCONS_00041012 ID=TCONS_00041012|Name=TCONS_00041012|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0002664:18247..18609 (Clytia hemisphaerica)
TTGCTTAGTCTCCGTTGTGAGACAGTAGTGATGAAGTTGACTTGGGTAGT
CCTCCAAACATCCTTCGCACATTTCTCGCCGCACTTCCAAGACTTTTTCT
CGCATGATCTTAAAAAACACGTTTTGCATTTCATTCTTGAACTTCTTTCG
TTTCCATTCCAAAAGATAACCAGTGACATTAGCGATGAGAAAATCAGCTT
TGTCAGGAGAGAAAATGATTGAGTTGGTATGTTGCCCACTAAGTTTTTGA
GTTATGATAAAGAATTCCTCTTCTTGATCAAAATAGTTTTCAACATTGAA
ATTTAAGGTTCGGTCATTCTTCCACCTTGAAATTCTGCTCTTGAAACACC
GTTTCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025044XLOC_025044Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041012-proteinTCONS_00041012-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041012-exon-sc0002664-1491911889:18247..18609TCONS_00041012-exon-sc0002664-1491911889:18247..18609Clytia hemisphaericaexon
TCONS_00041012-exon-sc0002664-1510915933:18247..18609TCONS_00041012-exon-sc0002664-1510915933:18247..18609Clytia hemisphaericaexon
TCONS_00041012-exon-sc0002664-1575043694:18247..18609TCONS_00041012-exon-sc0002664-1575043694:18247..18609Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002664supercontigsc0002664:18247..18609 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.90447	0	0.123275	0.510387	3.16062	3.19332	1.85075	2.62558	1.00873	3.75264	0.337141	0.65043	0.965968	1.03059	0	0.681887	0.876213	1.01723	2.76269	2.20543	0.965203	1.01144	0.264143	0.731833	0.522145	1.30374	0.450293	0.532899	0.283687	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014746Gln_synth/guanido_kin_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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