TCONS_00040994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040994
Unique NameTCONS_00040994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040994 ID=TCONS_00040994|Name=TCONS_00040994|organism=Clytia hemisphaerica|type=transcript|length=1339bp
TAAGAAACGGGAAATAGCATAATACGGAAAAAGTAAATATCTTTCCGCAT
AGAGACAATATAAAGACTCCAGATTTCATTATTAGAGGTATGTCTTTCAT
CAGATTAAAACGATGAGGACGTTAACAATCTTTCTGGTTTTGGGCCTTGC
AGCATCAGTTGTACTGGGTGGTTCAGCGTATGGACGACGTGGTGCTAAAT
ATGACCAACGCGCTCATGTCTCCAACAAGCTTATCAAAAGTGACGATGGA
AATTTTGGTTATGGAATTGAAAATGGAAATCCAGTTCTAGATACTCCTGG
CGACGAAAATCCAGCTCCGGTTGAAAATGAAAATCTATTTCCCGGTGGAA
ACGGGAATGAAGTTCCAAGTGGAAACGGAAATTTAGTTCCAGGTGAAAAC
GGAAATGAAATTTCAGGTGGAAATGAAAATCATGCTTTGGGTGGAAATGA
AGGTGGTTACCAGGCAGTAGGAGAAAATTTGCTTTCGCTAGTCTCCAATG
TGCTACCTAATGAAAGAGGATCATCATCTGGTTCAATGGGAAAAGGAAGA
GGTGGTCGAGGAGGAGGAAACACAGCAATGGGGAGAAGCAGAGGAAACAG
AAGAGCTTACGGAAGAGGCAGAACAAGTCGATCGAGCCGACGTCGTCGAA
GTAGAAGAAGCAGAAGCAGAAGGAGCAGAAGCAGAAGAAGCAGAAGCAGA
AGAAGCAGGAGAAGAAGTAGTCGAAGGAGCGGGAGAAGCAGAAGGCGTAG
AAGAAGCAGAAAAGGTTGGCTTGGTCGTTAAAAAAAATAAACTGGAACCC
TCGATATCGTGACAATGGCATTTATTGAAGAATCAACGTACAGCGGGGTC
TCTTTAACTCGAACCTCTATAACTCAAAAGTTTCCTTAACTCGAACAAGT
TTTATGGTCCCTTCAGTTGACCTTTTAAGCCTTACTCTGAAATTTCTTTG
ACTTAAATCTATGCGTGTTCGAGTTATAGAGATTCTACTGTCTTTCTAAA
TATCATTATGTATAAAATTTAATCATGGACTTGTATTAGTACGACAACAG
TTGTATCATAATTTAAACATATAACTAGCACTACAGTAGACTTCCGGTTA
TTCGAAGTTCCGAGGGAAGTGGAGATTTATTTCTAATCACGGAGTTCAAA
TTAACCCTGAAAAACTGAAATTTCCAGCAAGGTCGTTTTTCCCAGTTGAT
TTCAAATAACTGGAGTGTCTACTGCAGCTTTCAGAATTTTCCAATTTTTC
ATTATATTATCTTATTTGTGTGTAGTGGGATATGCCCAACACATTTTAGT
AAATTAGCGATTCTTAATTTGAACAAAATACAAAAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00040994-protein

>TCONS_00040994-protein ID=TCONS_00040994-protein|Name=TCONS_00040994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MCYLMKEDHHLVQWEKEEVVEEEETQQWGEAEETEELTEEAEQVDRADVV
EVEEAEAEGAEAEEAEAEEAGEEVVEGAGEAEGVEEAEKVGLVVKKNKLE
PSIS
Run BLAST on NCBI

transcript from alignment at sc0002658:3028..6120-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040994 ID=TCONS_00040994|Name=TCONS_00040994|organism=Clytia hemisphaerica|type=transcript|length=3093bp|location=Sequence derived from alignment at sc0002658:3028..6120- (Clytia hemisphaerica)
TAAGAAACGGGAAATAGCATAATACGGAAAAAGTAAATATCTTTCCGCAT
AGAGACAATATAAAGACTCCAGATTTCATTATTAGAGGTATGTCTTTCAT
CAGATTAAAACGATGAGGACGTTAACAATCTTTCTGGTTTTGGGCCTTGC
AGCATCAGTTGTACTGGGTAAGAAATGGTTTCTTGTTTCTTGTCAAATCC
TTATAACTTAACTTTAAGTAAGTTTGCGAACAGTATCATAGATGACTCGA
AAGCTCTTCTGTCCATCCACTCAGTCAGTCAAAACTTGTAAAAGCGAAAA
TTGGAAAATTCAAACCGGAAACATAACAAAAATAAATAAAACTTTTTTTT
TTACAGGTGATTCAGCGTATGGACGACGTGGTGCTAAATATGACCAACGC
GCTCATGTCTCTAACAAGCTTACCAAAAGTAAGTACAGTCAAGCTCAAAA
TAAATATTGATCATTTTGGGTCTTTTAACGTTTTCCAAAGTCCATTTTTC
AAGTTCGGACGAGAATTGCGATTTCAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AGTTGTACTGGGTAAGAAATGGTTTCTTGTTTCTTGTCAAATCCTTATAA
CTTAACTTTAAGTAAGTTTGCGAACAGTATCATAGATGACCCGAAAGCTC
TTCTGTCCATTCACTCAGTCAGTCAAAACTTGTAAAAGCGAAAATTTGAA
AATTCGAACCGGAAACATAACAAAAATAAATAAAACTTTTTTATACAGGT
GGTTCAGCGTATGGACGACGTGGTGCTAAATATGACCAACGCGCTCATGT
CTCCAACAAGCTTATCAAAAGTGAGTACAATAGTCAAGCTCAAAATAAAT
ATTGATCATTTTGGGTCTTTTAACGTTTTCCAAAGTCCAGAAACTATATA
ATTTTCTATAAATTCTAGGTGACGATGGAAATTTTGGTTATGGAATTGAA
AATGGAAATCCAGTTCTAGGTACTATTCATCTTTTCAATCAATATATATT
TCATAGAGGTCAATAAACCTGAGAAATACACCTATACCTGATGCTTTCTT
ACTACCTCTGTTTCTTGATGTATTTTTTCTCCAGATCAATCAAAATACAA
GCACAGAAAAAACCCTTATGCCAAATCTAACATTAAAAAGTTTTCGAAAA
GAGAATTCAGCAAAAATCGACAAGCTTCCAGGCTATATTCTCTTTTTATA
AGAACAATTTACAATAACAAAGAACAACGAGGCTCAAAAATGACAAAAAA
ATAAGAACAATTAGTGGACCATGTTTAGCATAGAAAAGCTAATTTTAAGC
AAATTATGGGTAAATACCTCAGTTTTAACTTAAGAATAAGAACAGGATAG
GAACAATTTTAGGCTCAAAATGTCAAACTAAGAAGAAACAGCCTAGTATT
ATCAATAATTTACTGATTCTTTTAACAAAAAGAGTGCAATACATCTCAAC
CATTTGCTTTAATTATAATTTATTTTGATTCCTTTTTATTCAGATACTCC
TGGCGACGAAAATCCAGCTCCGGTTGAAAATGAAAATCTATTTCCCGGTG
GAAACGGGAATGAAGTTCCAAGTGGAAACGGAAATTTAGTTCCAGGTGAA
AACGGAAATGAAATTTCAGGTGGAAATGAAAATCATGCTTTGGGTATAAT
ATGCATTTGAGTAACTCTACCTTTATTCAACTTTTTCTGTTTTTGTTGAT
ATAACTGTCGTAAAAAATTACTTCAATTTTCTTATTCATTTAATTCTAAA
GTTGTCCTTGAGAAAGACGAAAGACGATACCAGAATGGTCTAAAAGGACT
GAGCCACTTAAAATAACATATATCATTGTTTTCATTATAACCAGGTGGAA
ATGAAGGTGGTTACCAGGCAGTAGGAGAAAATTTGCTTTCGCTAGTCTCC
AATGTGCTACCTAATGAAAGAGGATCATCATCTGGTTCAATGGGAAAAGG
AAGAGGTGGTCGAGGAGGAGGAAACACAGCAATGGGGAGAAGCAGAGGAA
ACAGAAGAGCTTACGGAAGAGGCAGAACAAGTCGATCGAGCCGACGTCGT
CGAAGTAGAAGAAGCAGAAGCAGAAGGAGCAGAAGCAGAAGAAGCAGAAG
CAGAAGAAGCAGGAGAAGAAGTAGTCGAAGGAGCGGGAGAAGCAGAAGGC
GTAGAAGAAGCAGAAAAGGTTGGCTTGGTCGTTAAAAAAAATAAACTGGA
ACCCTCGATATCGTGACAATGGCATTTATTGAAGAATCAACGTACAGCGG
GGTCTCTTTAACTCGAACCTCTATAACTCAAAAGTTTCCTTAACTCGAAC
AAGTTTTATGGTCCCTTCAGTTGACCTTTTAAGCCTTACTCTGAAATTTC
TTTGACTTAAATCTATGCGTGTTCGAGTTATAGAGATTCTACTGTCTTTC
TAAATATCATTATGTATAAAATTTAATCATGGACTTGTATTAGTACGACA
ACAGTTGTATCATAATTTAAACATATAACTAGCACTACAGTAGACTTCCG
GTTATTCGAAGTTCCGAGGGAAGTGGAGATTTATTTCTAATCACGGAGTT
CAAATTAACCCTGAAAAACTGAAATTTCCAGCAAGGTCGTTTTTCCCAGT
TGATTTCAAATAACTGGAGTGTCTACTGCAGCTTTCAGAATTTTCCAATT
TTTCATTATATTATCTTATTTGTGTGTAGTGGGATATGCCCAACACATTT
TAGTAAATTAGCGATTCTTAATTTGAACAAAATACAAAAAAAA

Coding sequence (CDS) from alignment at sc0002658:3028..6120-

>TCONS_00040994 ID=TCONS_00040994|Name=TCONS_00040994|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0002658:3028..6120- (Clytia hemisphaerica)
ATGTGCTACCTAATGAAAGAGGATCATCATCTGGTTCAATGGGAAAAGGA
AGAGGTGGTCGAGGAGGAGGAAACACAGCAATGGGGAGAAGCAGAGGAAA
CAGAAGAGCTTACGGAAGAGGCAGAACAAGTCGATCGAGCCGACGTCGTC
GAAGTAGAAGAAGCAGAAGCAGAAGGAGCAGAAGCAGAAGAAGCAGAAGC
AGAAGAAGCAGGAGAAGAAGTAGTCGAAGGAGCGGGAGAAGCAGAAGGCG
TAGAAGAAGCAGAAAAGGTTGGCTTGGTCGTTAAAAAAAATAAACTGGAA
CCCTCGATATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025031XLOC_025031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040994-exon-sc0002658-1575043694:5954..6120TCONS_00040994-exon-sc0002658-1575043694:5954..6120Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1575043694:4951..5022TCONS_00040994-exon-sc0002658-1575043694:4951..5022Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1575043694:4802..4852TCONS_00040994-exon-sc0002658-1575043694:4802..4852Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1575043694:4128..4277TCONS_00040994-exon-sc0002658-1575043694:4128..4277Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1575043694:3028..3926TCONS_00040994-exon-sc0002658-1575043694:3028..3926Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1510915933:5954..6120TCONS_00040994-exon-sc0002658-1510915933:5954..6120Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1510915933:4951..5022TCONS_00040994-exon-sc0002658-1510915933:4951..5022Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1510915933:4802..4852TCONS_00040994-exon-sc0002658-1510915933:4802..4852Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1510915933:4128..4277TCONS_00040994-exon-sc0002658-1510915933:4128..4277Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1510915933:3028..3926TCONS_00040994-exon-sc0002658-1510915933:3028..3926Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1491911889:5954..6120TCONS_00040994-exon-sc0002658-1491911889:5954..6120Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1491911889:4951..5022TCONS_00040994-exon-sc0002658-1491911889:4951..5022Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1491911889:4802..4852TCONS_00040994-exon-sc0002658-1491911889:4802..4852Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1491911889:4128..4277TCONS_00040994-exon-sc0002658-1491911889:4128..4277Clytia hemisphaericaexon
TCONS_00040994-exon-sc0002658-1491911889:3028..3926TCONS_00040994-exon-sc0002658-1491911889:3028..3926Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040994-proteinTCONS_00040994-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002658supercontigsc0002658:3028..6120 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0470943	0.0376918	0.0823734	0.0347786	0.0211698	0.0669146	0.0605472	0.0566836	0.026457	0.0163856	0.0159043	0.0209097	2.02093	1.2015	0.255	0.0903231	0	0	0.0828509	0.41555	0	0	0	0	18.5419	30.2584	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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