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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040992 ID=TCONS_00040992|Name=TCONS_00040992|organism=Clytia hemisphaerica|type=transcript|length=1963bp
acgggaacacttatgtaaaacaataaaacctttaaagtagGATTTGATAA
ATCAGTTAAGTTATATCTATTAGCTATGGTTTGCATCACCAAAGACAGTG
CTCGACATAAAGTGTTTATGTAATATATAATTTTGAACTGaatttaataa
agaaaaatcatcaaataaaGCTTTGTTATTCTTTCAATTTAACCAAACCA
TTTATCATTCAAACAAACCAAACCAAATTCATTCATACCGTACAGTGTTG
GTATATTTTAATCGACtgttatttcaaaaattcgTCTCGGTAAAATTTTC
TAATCGATGCAAGCCAATCCCCGTTTTCTGTCATGTGATGTTTCACATAA
TTCACCTGAAAGGCCGTTGCTAATTGACTTGCCATTTCCGGGTGCTTTTT
TCTGATAGCTGGCATAATCATGGTCTCAAAAAGCTTTCTTTTAGCAGCCA
TGGTTGGCTCATCTAAATCGCCAAATCGGATCTCGCTAATGAAATTTGAT
ATCATGCGACACGCATGCTTGAAGATTTCATCGTCGTCTTTATCCGTCTG
AAATAGAAGAGAAATAAGTTTGTCCACATTTGCTTGGATCAGCTCTCTCA
TACAATCTTTCTCAAGTTGCATAGAGGAATCTTGCAGCTGGCGTTCAAGG
GCTTTGACCTTCTCATTAAGCTTAATATTGAACCGATATCTAACTGAATC
TTTTTTGTTagcctttttctctttttcggTTCGAGGGCGTTTTCCCTCAT
TTTTTGTCAAAGGTGTAGTTTGGTTGTCGCTGGGATCCTGGACAATAGCT
GTGGCCATATTTGGTCTTGAATCAGTTGAAATATTTTGTGTAAACACATG
ATCGTTGGCCTGTTGGGTTCTCTCATAGGGTTTAGACTTTCCTCTTTTAG
TGCGATTCCGTCGCTTTTTTGGTCTAGTGACTAACCGGACATCTTCATTC
TAGATATTTTTTAACCCTTCACTGTCAGACGAAAGTTCACTGCCATGATC
ACTTTCGACAGCTTCATTCTTCCTTTTTGTTATCAGAATGTTTCCATTGA
TAGACTTGTCGCCATCTTCATTTTCTGTAAGAAGGTCAGGAATAGCCATC
TCACAAGAAGCCTTCAAGTTATTTGCAATTCTTCCAACAACAATTGTTTC
CTCTTCGACAGTATCTGATTGAGCTTGATAAAAGTGAACGTCTTGGCCAT
TACTCTCAACGATTTATTCGACCATGTTGGCGATTTTTGCTACATTATCA
TCACCGTGTTTTCTTGGCAACGATTCCATCGGAGGGCTGACGTCACTTCT
TGCAGAAAATGCTGACTCAAGATTTCTAAGTAAGCATCCATGAACAAACT
ACTTGTNGGCTCTTCTTGTAAATGCTGACTCAAGATTTCTAAGTAAGCAT
CCATCAACAAACTACTAGCTACCGAAAGTGTTTGCTGGTCCAATTCGATG
TCTCCAAGCTGCGGTGCTGAGACATCCATTGCATCATAATCTGCTAATGA
CTCAATTGGTTGATCTGCTGAAGGGATAACATATCCATCATTAGCCTGAT
AAGATCGGTTGGGTTCGAACGAAGGTTGCTGGGGAAAGTTTTCAAGAGAT
ATGAGGGATACACCACAAACAGGAGTTCTCAAATAATCGCCAAAGGTTTC
AGGTGCTGCATTTGTGACATTCGAGAATTCTGGTTCTTCATCAACAACAT
AACGAAGTGATGGCGGTGCTAAAAGCCCCCTTGATTATTTCTTTGTGAAT
TGGTCATTGGAAGTAAACTCTGTTTCCTCAAGCTTTAGCAATCTTTTCTC
AGTTTCGCCACCATTGTACTGAATAGTGAGCCCATCGATATAGTTTGTGT
TATTATTGATGTTGATGCATAAGTTCACGGCTGAAAAGGAATGCAAAAGA
ATCAATTTCACCTTTGTTTCAGTATACCTGGTGTGGCAGACAATTTTCTC
TCCAGGTTTTCTT Run BLAST on NCBI protein sequence of TCONS_00040992-protein >TCONS_00040992-protein ID=TCONS_00040992-protein|Name=TCONS_00040992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MATAIVQDPSDNQTTPLTKNEGKRPRTEKEKKANKKDSVRYRFNIKLNEK
VKALERQLQDSSMQLEKDCMRELIQANVDKLISLLFQTDKDDDEIFKHAC
RMISNFISEIRFGDLDEPTMAAKRKLFETMIMPAIRKKHPEMASQLATAF
QVNYVKHHMTENGDWLASIRKFYRDEFLK Run BLAST on NCBI transcript from alignment at sc0002657:3299..5261 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040992 ID=TCONS_00040992|Name=TCONS_00040992|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at sc0002657:3299..5261 (Clytia hemisphaerica)
AAGAAAACCTGGAGAGAAAATTGTCTGCCACACCAGGTATACTGAAACAA
AGGTGAAATTGATTCTTTTGCATTCCTTTTCAGCCGTGAACTTATGCATC
AACATCAATAATAACACAAACTATATCGATGGGCTCACTATTCAGTACAA
TGGTGGCGAAACTGAGAAAAGATTGCTAAAGCTTGAGGAAACAGAGTTTA
CTTCCAATGACCAATTCACAAAGAAATAATCAAGGGGGCTTTTAGCACCG
CCATCACTTCGTTATGTTGTTGATGAAGAACCAGAATTCTCGAATGTCAC
AAATGCAGCACCTGAAACCTTTGGCGATTATTTGAGAACTCCTGTTTGTG
GTGTATCCCTCATATCTCTTGAAAACTTTCCCCAGCAACCTTCGTTCGAA
CCCAACCGATCTTATCAGGCTAATGATGGATATGTTATCCCTTCAGCAGA
TCAACCAATTGAGTCATTAGCAGATTATGATGCAATGGATGTCTCAGCAC
CGCAGCTTGGAGACATCGAATTGGACCAGCAAACACTTTCGGTAGCTAGT
AGTTTGTTGATGGATGCTTACTTAGAAATCTTGAGTCAGCATTTACAAGA
AGAGCCNACAAGTAGTTTGTTCATGGATGCTTACTTAGAAATCTTGAGTC
AGCATTTTCTGCAAGAAGTGACGTCAGCCCTCCGATGGAATCGTTGCCAA
GAAAACACGGTGATGATAATGTAGCAAAAATCGCCAACATGGTCGAATAA
ATCGTTGAGAGTAATGGCCAAGACGTTCACTTTTATCAAGCTCAATCAGA
TACTGTCGAAGAGGAAACAATTGTTGTTGGAAGAATTGCAAATAACTTGA
AGGCTTCTTGTGAGATGGCTATTCCTGACCTTCTTACAGAAAATGAAGAT
GGCGACAAGTCTATCAATGGAAACATTCTGATAACAAAAAGGAAGAATGA
AGCTGTCGAAAGTGATCATGGCAGTGAACTTTCGTCTGACAGTGAAGGGT
TAAAAAATATCTAGAATGAAGATGTCCGGTTAGTCACTAGACCAAAAAAG
CGACGGAATCGCACTAAAAGAGGAAAGTCTAAACCCTATGAGAGAACCCA
ACAGGCCAACGATCATGTGTTTACACAAAATATTTCAACTGATTCAAGAC
CAAATATGGCCACAGCTATTGTCCAGGATCCCAGCGACAACCAAACTACA
CCTTTGACAAAAAATGAGGGAAAACGCCCTCGAAccgaaaaagagaaaaa
ggctAACAAAAAAGATTCAGTTAGATATCGGTTCAATATTAAGCTTAATG
AGAAGGTCAAAGCCCTTGAACGCCAGCTGCAAGATTCCTCTATGCAACTT
GAGAAAGATTGTATGAGAGAGCTGATCCAAGCAAATGTGGACAAACTTAT
TTCTCTTCTATTTCAGACGGATAAAGACGACGATGAAATCTTCAAGCATG
CGTGTCGCATGATATCAAATTTCATTAGCGAGATCCGATTTGGCGATTTA
GATGAGCCAACCATGGCTGCTAAAAGAAAGCTTTTTGAGACCATGATTAT
GCCAGCTATCAGAAAAAAGCACCCGGAAATGGCAAGTCAATTAGCAACGG
CCTTTCAGGTGAATTATGTGAAACATCACATGACAGAAAACGGGGATTGG
CTTGCATCGATTAGAAAATTTTACCGAGAcgaatttttgaaataacaGTC
GATTAAAATATACCAACACTGTACGGTATGAATGAATTTGGTTTGGTTTG
TTTGAATGATAAATGGTTTGGTTAAATTGAAAGAATAACAAAGCtttatt
tgatgatttttctttattaaattCAGTTCAAAATTATATATTACATAAAC
ACTTTATGTCGAGCACTGTCTTTGGTGATGCAAACCATAGCTAATAGATA
TAACTTAACTGATTTATCAAATCctactttaaaggttttattgttttaca
taagtgttcccgt Coding sequence (CDS) from alignment at sc0002657:3299..5261 >TCONS_00040992 ID=TCONS_00040992|Name=TCONS_00040992|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0002657:3299..5261 (Clytia hemisphaerica)
ATGGCCACAGCTATTGTCCAGGATCCCAGCGACAACCAAACTACACCTTT
GACAAAAAATGAGGGAAAACGCCCTCGAAccgaaaaagagaaaaaggctA
ACAAAAAAGATTCAGTTAGATATCGGTTCAATATTAAGCTTAATGAGAAG
GTCAAAGCCCTTGAACGCCAGCTGCAAGATTCCTCTATGCAACTTGAGAA
AGATTGTATGAGAGAGCTGATCCAAGCAAATGTGGACAAACTTATTTCTC
TTCTATTTCAGACGGATAAAGACGACGATGAAATCTTCAAGCATGCGTGT
CGCATGATATCAAATTTCATTAGCGAGATCCGATTTGGCGATTTAGATGA
GCCAACCATGGCTGCTAAAAGAAAGCTTTTTGAGACCATGATTATGCCAG
CTATCAGAAAAAAGCACCCGGAAATGGCAAGTCAATTAGCAACGGCCTTT
CAGGTGAATTATGTGAAACATCACATGACAGAAAACGGGGATTGGCTTGC
ATCGATTAGAAAATTTTACCGAGAcgaatttttgaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040992-exon-sc0002657-1491911889:3299..5261 | TCONS_00040992-exon-sc0002657-1491911889:3299..5261 | Clytia hemisphaerica | exon |
| TCONS_00040992-exon-sc0002657-1510915933:3299..5261 | TCONS_00040992-exon-sc0002657-1510915933:3299..5261 | Clytia hemisphaerica | exon |
| TCONS_00040992-exon-sc0002657-1575043694:3299..5261 | TCONS_00040992-exon-sc0002657-1575043694:3299..5261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002657 | supercontig | sc0002657:3299..5261 . |
Blast
The following BLAST results are available for this feature:
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