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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040987 ID=TCONS_00040987|Name=TCONS_00040987|organism=Clytia hemisphaerica|type=transcript|length=1449bp
gttttttttcatcgCCATTTTTTCAACGGTGTTTAGCTTTTAAATTTAGT
ATAAATGGTTGcttagaaaataataaaaaagtatAGTCTCCacatacttt
ggagaaatttcttaaaaacagccaaacatattaaaaataacaaaataatt
cttttattaTAAAGTATTTATATTCATTTGGATCATAAAATAGTAATTAT
CTATCGATCATGGTTACATTGGCATTTGATTTCGGATTCCTGGAGGCTGT
CCTCCGTTCATTGCGAGTGGCGCTCGGATACCCTGTTGCCCTGCTCCTTG
CATCGGCATTCGATTTCGGATTCCTGGTGTCTGCCCTCCATTTATTGCAA
ATGGCGCTCGAATACCCTGTTGCCCTCCTCCTTGCATAGGCATTCGATTT
CGGATTCCTGGCGTCTGTCCTCCATTTATTGCGAATGGTGCTCGAATACC
CTGTTGCCCTCCTCCTTGCATAGGCATTCGATTTCGGATTCCTGGTGTCT
GCCCTCCATTCATTGCGAATGGCACTCGAATGCCCTGTTGCCCTCCTCCT
TGCATAGGCATTTGATTTCGGATCCCTGGCATTTGCCCTCCGTTCATTGG
AAGTGGCCCTCGGATACCTTGTTGCCCTCCTCCTGGAATTGACATTTGCT
TTTGGATCCCTTCAGGCTGTCCTCCGCTCATTGCAAATGGTGCTCCAATA
CCCTGTTGCCCTCCTCCTGGTATAGATATTTGCTTTTGGATCCCTGCATG
CTGTGCTCCGTTCATATCGAGTGGCGCTAGGATACCCTGTTGCCCACCTC
CTGGTATAGATATTTGCTTTTGGATCCCTGCAGGCTGTGCTCCGTTCATA
TCGAGTGGCGCTAGGATACCCTGTTGTCCTCCTTCTGGAATTGACATTTG
CTTTTGGATCCCTGGAGGCTGTCCTCCGGGTATTGATTGAGCGTTCAGCG
CAGATTCTTCCAGCTCGGAGCTTCGCATCGTGTTTGGTACATCAGATGTA
CCCCCTCCTCCAGGTAGCTCCAGTATTCTTTGGGTATCTACTACGTCTTT
TTGGGCAGTTTCTCGATAATTTTCTCCAGTTTTTTCATCACTTGAGTCAT
CATCCAGCTTCCTAAAAAAATGccagaaaaatttcataatttatagatga
aaaaatttacgTGTAAGAAATGCACTTAGTGTCTACATTAAGGTATAATC
Ttacaaatttttattcaaaactttgcttcattttgaaatgttttaaaagt
agctcgagtaatatattttttcttcactaTCTTTTGACGTTATTATACAT
CTTTGTAGGTAAATATAGAAATATCTAAAGATAACATACTTTTGGagata
aaatttccaaattgcGAAGATCGTAGCAAATGCCATACATAATGAACATA
GTGATGCAACCGCCTTCGATGCTCCGGAGCTGGTTTTCTTAGGTTTGGG Run BLAST on NCBI transcript from alignment at sc0002656:17157..18689+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040987 ID=TCONS_00040987|Name=TCONS_00040987|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0002656:17157..18689+ (Clytia hemisphaerica)
gttttttttcatcgCCATTTTTTCAACGGTGTTTAGCTTTTAAATTTAGT
ATAAATGGTTGcttagaaaataataaaaaagtatAGTCTCCacatacttt
ggagaaatttcttaaaaacagccaaacatattaaaaataacaaaataatt
cttttattaTAAAGTATTTATATTCATTTGGATCATAAAATAGTAATTAT
CTATCGATCATGGTTACATTGGCATTTGATTTCGGATTCCTGGAGGCTGT
CCTCCGTTCATTGCGAGTGGCGCTCGGATACCCTGTTGCCCTGCTCCTTG
CATCGGCATTCGATTTCGGATTCCTGGTGTCTGCCCTCCATTTATTGCAA
ATGGCGCTCGAATACCCTGTTGCCCTCCTCCTTGCATAGGCATTCGATTT
CGGATTCCTGGCGTCTGTCCTCCATTTATTGCGAATGGTGCTCGAATACC
CTGTTGCCCTCCTCCTTGCATAGGCATTCGATTTCGGATTCCTGGTGTCT
GCCCTCCATTCATTGCGAATGGCACTCGAATGCCCTGTTGCCCTCCTCCT
TGCATAGGCATTTGATTTCGGATCCCTGGCATTTGCCCTCCGTTCATTGG
AAGTGGCCCTCGGATACCTTGTTGCCCTCCTCCTGGAATTGACATTTGCT
TTTGGATCCCTTCAGGCTGTCCTCCGCTCATTGCAAATGGTGCTCCAATA
CCCTGTTGCCCTCCTCCTGGTATAGATATTTGCTTTTGGATCCCTGCATG
CTGTGCTCCGTTCATATCGAGTGGCGCTAGGATACCCTGTTGTCCTCCTT
CTGGAATTGACATTTGCTTTTGGATCCCTGCAGGCTGTGCTCCGTTCATA
TCGAGTGGCGCTAGGATACCCTGTTGCCCACCTCCTGGTATAGATATTTG
CTTTTGGATCCCTGCAGGCTGTGCTCCGTTCATATCGAGTGGCGCTAGGA
TACCCTGTTGTCCTCCTTCTGGAATTGACATTTGCTTTTGGATCCCTGGA
GGCTGTCCTCCGGGTATTGATTGAGCGTTCAGCGCAGATTCTTCCAGCTC
GGAGCTTCGCATCGTGTTTGGTACATCAGATGTACCCCCTCCTCCAGGTA
GCTCCAGTATTCTTTGGGTATCTACTACGTCTTTTTGGGCAGTTTCTCGA
TAATTTTCTCCAGTTTTTTCATCACTTGAGTCATCATCCAGCTTCCTAAA
AAAATGccagaaaaatttcataatttatagatgaaaaaatttacgTGTAA
GAAATGCACTTAGTGTCTACATTAAGGTATAATCTtacaaatttttattc
aaaactttgcttcattttgaaatgttttaaaagtagctcgagtaatatat
tttttcttcactaTCTTTTGACGTTATTATACATCTTTGTAGGTAAATAT
AGAAATATCTAAAGATAACATACTTTTGGagataaaatttccaaattgcG
AAGATCGTAGCAAATGCCATACATAATGAACATAGTGATGCAACCGCCTT
CGATGCTCCGGAGCTGGTTTTCTTAGGTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040987-exon-sc0002656-1491911889:17157..17905 | TCONS_00040987-exon-sc0002656-1491911889:17157..17905 | Clytia hemisphaerica | exon |
| TCONS_00040987-exon-sc0002656-1510915933:17157..17905 | TCONS_00040987-exon-sc0002656-1510915933:17157..17905 | Clytia hemisphaerica | exon |
| TCONS_00040987-exon-sc0002656-1575043694:17157..17905 | TCONS_00040987-exon-sc0002656-1575043694:17157..17905 | Clytia hemisphaerica | exon |
| TCONS_00040987-exon-sc0002656-1491911889:17990..18689 | TCONS_00040987-exon-sc0002656-1491911889:17990..18689 | Clytia hemisphaerica | exon |
| TCONS_00040987-exon-sc0002656-1510915933:17990..18689 | TCONS_00040987-exon-sc0002656-1510915933:17990..18689 | Clytia hemisphaerica | exon |
| TCONS_00040987-exon-sc0002656-1575043694:17990..18689 | TCONS_00040987-exon-sc0002656-1575043694:17990..18689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002656 | supercontig | sc0002656:17157..18689 + |
Blast
The following BLAST results are available for this feature:
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