TCONS_00040981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040981
Unique NameTCONS_00040981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040981 ID=TCONS_00040981|Name=TCONS_00040981|organism=Clytia hemisphaerica|type=transcript|length=294bp
ACCAGAGCATTTTCTTTGGTGGATCCAATGGTCACAAATATCACATTGGA
TTGAGTTACATTTTTCACTGACATTCTTagtaaAAACTGAGCAAGGGAAT
ATTTCAGGCATAGATTCTAAAAAACAGACACACTCGGGACACACAGCACA
GGTCAGGCAGAGAATAAAAGGGATGGAAGAAACTTATACAAACAAAACTG
ACACAAATaggtataaaataaaataatctagatttttaaagaagaaaaaa
gaacaaaccTCTGACAGGAAAGCAAAAAACCACGGAATTTGAAA
Run BLAST on NCBI

transcript from alignment at sc0002652:6857..7557+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040981 ID=TCONS_00040981|Name=TCONS_00040981|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0002652:6857..7557+ (Clytia hemisphaerica)
ACCAGAGCATTTTCTTTGGTGGATCCAATGGTCACAAATATCACATTGGA
TTGAGTTACATTTTTCACTGACATTCTTagtaaattaaaaaagaagacac
tacattgccgcgcttttcgatgagcaaaacttgaaaaggaaaacaaaaaa
atggacgacaagaaaatatttacaaaaataAACAGGTTAGTAAAACACTA
AAGTTCTTATAAAAAgacgcttttttagtgaaaaagcgcgtggttttgaa
aagttcaaatacccctgtatcatctcgGAAGAGAGTTAAAGTATTACCTG
GGTTCGAATAGCGCTCGCTTTAACgacttattattccaagaagaagcttt
caaataaagtgaaaacaaactgaaagaaggacttcaagcttgtttacgag
atggtcaaaaaggatttatgtaaaaacccaaagtaagtgagaaaagtgaa
aaataagtttgccgttcgtgcactgggcacCCCCCTCTACAAACTGAGCA
AGGGAATATTTCAGGCATAGATTCTAAAAAACAGACACACTCGGGACACA
CAGCACAGGTCAGGCAGAGAATAAAAGGGATGGAAGAAACTTATACAAAC
AAAACTGACACAAATaggtataaaataaaataatctagatttttaaagaa
gaaaaaagaacaaaccTCTGACAGGAAAGCAAAAAACCACGGAATTTGAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025021XLOC_025021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040981-exon-sc0002652-1491911889:6857..6939TCONS_00040981-exon-sc0002652-1491911889:6857..6939Clytia hemisphaericaexon
TCONS_00040981-exon-sc0002652-1510915933:6857..6939TCONS_00040981-exon-sc0002652-1510915933:6857..6939Clytia hemisphaericaexon
TCONS_00040981-exon-sc0002652-1575043694:6857..6939TCONS_00040981-exon-sc0002652-1575043694:6857..6939Clytia hemisphaericaexon
TCONS_00040981-exon-sc0002652-1491911889:7347..7557TCONS_00040981-exon-sc0002652-1491911889:7347..7557Clytia hemisphaericaexon
TCONS_00040981-exon-sc0002652-1510915933:7347..7557TCONS_00040981-exon-sc0002652-1510915933:7347..7557Clytia hemisphaericaexon
TCONS_00040981-exon-sc0002652-1575043694:7347..7557TCONS_00040981-exon-sc0002652-1575043694:7347..7557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002652supercontigsc0002652:6857..7557 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8973	0.50079	4.05357	2.89896	2.86715	1.02162	1.50249	0	0.154	1.23671	5.09772	0.559745	0.692483	2.55019	0.300934	1.28085	0	0.0700126	0	1.06282	1.39923	1.2997	0	0.60214	1.78774	3.00763	2.18784	0.746741	1.13019	0.470736
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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