TCONS_00040970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040970
Unique NameTCONS_00040970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040970 ID=TCONS_00040970|Name=TCONS_00040970|organism=Clytia hemisphaerica|type=transcript|length=311bp
agtttcaataaTTGACGTGATTGTGCAGATAATGAAGGAGTGTGACAGGC
GCCAGCTCATATCCCTGTCGATCCCTATCAATGACCTGCTCGATGAGATC
ATCAATGTTGTCAAGATGCAATGTAAAAGTAAATTCAAGTACATTCGATG
CATCCGTTTGGTAGTGCCAGACCTTACAAAGAACAATGCGAATAAAATAA
TTGAGCTTTTTAAATAAATACTATCGACTTTTACAGTACAAACCTAAGGT
GGATTAGTTTTCACGATTTCcgcaaattttggccattttcacgATAAAAT
TAGTCCtcgag
Run BLAST on NCBI

transcript from alignment at sc0002646:13206..13516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040970 ID=TCONS_00040970|Name=TCONS_00040970|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0002646:13206..13516 (Clytia hemisphaerica)
ctcgaGGACTAATTTTATcgtgaaaatggccaaaatttgcgGAAATCGTG
AAAACTAATCCACCTTAGGTTTGTACTGTAAAAGTCGATAGTATTTATTT
AAAAAGCTCAATTATTTTATTCGCATTGTTCTTTGTAAGGTCTGGCACTA
CCAAACGGATGCATCGAATGTACTTGAATTTACTTTTACATTGCATCTTG
ACAACATTGATGATCTCATCGAGCAGGTCATTGATAGGGATCGACAGGGA
TATGAGCTGGCGCCTGTCACACTCCTTCATTATCTGCACAATCACGTCAA
ttattgaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025015XLOC_025015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040970-exon-sc0002646-1491911889:13206..13516TCONS_00040970-exon-sc0002646-1491911889:13206..13516Clytia hemisphaericaexon
TCONS_00040970-exon-sc0002646-1510915933:13206..13516TCONS_00040970-exon-sc0002646-1510915933:13206..13516Clytia hemisphaericaexon
TCONS_00040970-exon-sc0002646-1575043694:13206..13516TCONS_00040970-exon-sc0002646-1575043694:13206..13516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002646supercontigsc0002646:13206..13516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.51994	3.3905	1.57468	0.770289	3.28213	1.11154	0.894015	0.836966	0.585979	0.362915	1.05676	0.231558	0.231236	0	0	0	0	0	0	0	0	0	0	0	1.49319	0.999476	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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