TCONS_00040964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040964
Unique NameTCONS_00040964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040964 ID=TCONS_00040964|Name=TCONS_00040964|organism=Clytia hemisphaerica|type=transcript|length=424bp
gctttcaagaaagtacTAAAATACTGCTTCAACAAGGAATAACCTATCCA
GTTCAAGTTCAAGCACAGATTCAAGTGATAATGAATATGATTCGAAAAGT
CCGAGTTCTAATGAATCGTCACAAGACAGTCAACCCAATTCACCACTTTT
GTTTCCAAAATATTCATCCACGCAGGTTTCTAGTCTTGTTGATGATGGAA
CTGGTTGCAGCTCAGAATTACGGGAGTTACAAGAGATGAAAAAGTTACTA
AATAAAGGTTCATTTTCGCCAATCAACACATCAGTATCATTAAGTGATGA
GGTGGATTTTAACCAAGAATACACAACAGATAGAAATCAAGAGATCCTGC
ACATTCCGAGTGACAATGACAGTGATGTTGACGTTGTTAATGTGACTCAA
TTTGAAAGTGGCAACAATCAAAAT
Run BLAST on NCBI

transcript from alignment at sc0002645:28867..32268+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040964 ID=TCONS_00040964|Name=TCONS_00040964|organism=Clytia hemisphaerica|type=transcript|length=3402bp|location=Sequence derived from alignment at sc0002645:28867..32268+ (Clytia hemisphaerica)
gctttcaagaaagtacTGTAAGTCTGGAATTTCCATACTgtaacaaaaat
ttacaaaatacctatcaaatGTCAAAACCGTAgaattccgttactgtaac
ctaaaaaaatcatggaattccaatactttaatgcaaaattaagtaaaatt
catggaattccaatactttctctttaaagtttgcctggaattccgtgcca
aaattatttaaaaaatttatgtCATCCAtacggggacgtgccactgGACA
TTGTTCCTTTTGTCACTTTTCTTGCTCTGACACAGGGCTAGTCTGGAAAT
TGCGGCTTGTGCGCCTGATATCTCCAGCGTAGATTTGAGATCTGCTGCCT
TCAACTTTTTGCAGTTAAGTTGGCGCAGCTTCGGCGTAACATTTCCCTTC
TTTCCAGACTGGGCACAGGGTctacttttttatcattttagcaTTTTTCG
TTGACGATTAGTATCTGTCAGGGTCTGTTTTTCAATCTCCAGCGGCACCT
CCCCGTCAGTCgttaggaccctgccgacgcaccggactgtccggtggcaa
aaaatatcctttcgctacaccggacacaataagtccggtgtcagtccggt
gttgcatacagggaattttggacgccggacatttatgaaacaaaaaatta
aggaaCNcacaataagtccggtgtcagtccggtgttgcatacagggaatt
ttggacgccggacatttatgaaacaaaaaatttaggaacaccggacgcac
cggactggtccggtgttttgattgtccggtggaaaaaattaTCCTTCTCG
GACACCGGACAttcgacttccttaagtccggtgtataGATTATCCGgtgg
tgaaaaaaattctcattttacaccggactttcgcgtgtccggtgtacatt
aagtccggtgcgtcggcagggtcctcagTCGTTAAGTTCAGTGCCCCCCC
CAGTTAGACCAAAGGAGTTCCCCCAAATATATAGATGGGAATCCTGCNTt
cagtgcccccccccagtTAGACCAAAGGAGTTCCCCAAAATATATAGATG
GGAATCCTGCCAACTGACAATACTCTTACTGAACTCAAAGTAGTGTACAG
GTGACATAGCCAGACGGTGTCACTCAAATCAATCGACCGAAGGCATCTTG
AGCATGGGTGACGGCCAAGACGCCCATCAGAATAGGTGCGGCATAATAAG
GGCCGGCATAAAAGGGGCCGATATTGAATTAGGCAAAAAAAGGTCCTATA
AGGCAATCGAAGATCAAGCGAACGTAATTGACACAATCAATCAAACATGA
TTATCAATTAAACCAATCGAATGCAATTAAATATTAACCAGGAATTAACA
ATTGGCCTGCTCCTAGATATTTGGTATGGGCGGTGGCCAATACACCCATC
ATAGTAGGTATTAGATATTTTAATTTTTAATTTTGTAGAAAATACTGCTT
CAACAAGGAATAACCTATCCAGTTCAAGTTCAAGCACAGATTCAAGTGAT
AATGAATATGATTCGAAAAGTCCGAGTTCTAATGAATCGTCACAAGACAG
TCAACCCAATTCACCACTTTTGTTTCCAAAATATTCATCCACGCAGGTTT
CTAGGTAAGTTACACAATAGTTAATTATTATTTTAATCATCAGCGTCTTA
AATAAAATGAAGCATAAATTTTAGTTTCAATTTTCCTTGTTTTTGCACAC
AAGGTTTTTAATACAAACACTCAATTGTGTTGTAGCCAACTTTGAGAAAG
AAACTAATTTTATGGCAGTGATAATTTTCATTTTCAATTAAAGAAAACTT
TCAAATGCCGATGAATGTCTGAATTTTATATTTGGATGTTCAATGCTCTT
CTGATAACCAGGTAGGTCCATAAAAGTATTGGTTATTTTATTTTAAGTCT
TGTTGATGATGGAACTGGTTGCAGCTCAGAATTACGGTAAGTACATTAAT
AATGTGTCATTTCGACTGTTAGAGTTGGTCATTTTTTGGCAGTGAACTTT
TGCTCATACTAAATAGTTTTTACACTATCTTTGAGTTTCTATTTCTTTAA
ACTTATTTGCATAAACCTTAATATAAGCAAACATCGCAAATAAGTACATT
ACAGTATTATTATGTCAACCCTTCAAGATGAAGGGCTATTATTGTAAGTT
CAGGACCTTAATTGAAACTTGTTATCTTTTTCAGGGAGTTACAAGAGATG
AAAAAGTTACTAAATAAAGGTTCATTTTCGCCAATCAACACATCAGTATC
ATTAAGGTATCCTCATGATATGATTTTCTGAAAAACTTTGATTATTCATA
TAACTGTAAGGGGAGGTTTATTGACAAAGTTTGGTTAACACATCAGCAAA
GTTCTTTGAACCAAGTTTTCTAAATTTCTAGTTTTGCTGTTTTGGACTGG
GTTAAAATCCTAAAAAATTTCTACTTTAAGCAATTTTGTGAAGCAAATAC
TGGTAATAGACCCAATGAACCTCTTTCAAGAGAGAATATACTATCATTTA
TGTTAACATGGGGAGTGAATAATGCCTTGAAAGATAGGGAAAAAATCCTG
TTGACACCTCGGTTTTGAGGGGGTTGCATCAAATTTTGAGAGAGGGTTGC
TCTAGTCTAGGGGTGATGGTCCCCTTCTGAACAACGAACCGAAATAACAT
GTTTGTTTCTATGCTTATAAGTCTTATGCTTGTATAAGAAAACATGTAGT
AAACTACTTTCTGCCATTTGATCTTTAGTGATGAGGTGGATTTTAACCAA
GAATACACAACAGATAGAAATCAAGAGATCCTGCACATTCCGAGGTAAGT
TTGGTGGGAACATTGTGATCTTTTGGCCAGGAAAGTGATTTATTATGGTT
ATCTGCAGTCATGAGATTGGTTGGTTGAGTAATAATTATACTGGGTGTCT
GTGAAAAAAGttccccctgtttgattcaaaatttcgaaaaagtgaaaata
tattagcttgattttttcgaaatcgtttagaggagggTTTAACTTAAGTT
AAACTAATACatgttttcactttttcgcaattttgaatGAAGTAGGGGGA
AGTTTTTTCACAGACACCTGGTATGAATTGTATTATTCATTTGAGATTTT
ATAACTTATTACTAAATATGTAACTTAGAAGCTTCAttttgtaataatat
tttattttatttaatatttaaaacGTTTCGGTCTTCATCCAAAGGCCATC
ATCAGTTAAAAAACCAGTAAGAAAGTTATGTACACATATTTATATCAGAG
TCGCTACaagtagaataaaaaaaaaaaaagaaagttaatGCGCTATTACG
TACATTACATATTACATATTACATCTTACATCTTACAGTGACAATGACAG
TGATGTTGACGTTGTTAATGTGACTCAATTTGAAAGTGGCAACAATCAAA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025009XLOC_025009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040964-exon-sc0002645-1491911889:28867..28883TCONS_00040964-exon-sc0002645-1491911889:28867..28883Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1510915933:28867..28883TCONS_00040964-exon-sc0002645-1510915933:28867..28883Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1575043694:28867..28883TCONS_00040964-exon-sc0002645-1575043694:28867..28883Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1491911889:30305..30470TCONS_00040964-exon-sc0002645-1491911889:30305..30470Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1510915933:30305..30470TCONS_00040964-exon-sc0002645-1510915933:30305..30470Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1575043694:30305..30470TCONS_00040964-exon-sc0002645-1575043694:30305..30470Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1491911889:30764..30802TCONS_00040964-exon-sc0002645-1491911889:30764..30802Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1510915933:30764..30802TCONS_00040964-exon-sc0002645-1510915933:30764..30802Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1575043694:30764..30802TCONS_00040964-exon-sc0002645-1575043694:30764..30802Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1491911889:31051..31122TCONS_00040964-exon-sc0002645-1491911889:31051..31122Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1510915933:31051..31122TCONS_00040964-exon-sc0002645-1510915933:31051..31122Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1575043694:31051..31122TCONS_00040964-exon-sc0002645-1575043694:31051..31122Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1491911889:31595..31660TCONS_00040964-exon-sc0002645-1491911889:31595..31660Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1510915933:31595..31660TCONS_00040964-exon-sc0002645-1510915933:31595..31660Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1575043694:31595..31660TCONS_00040964-exon-sc0002645-1575043694:31595..31660Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1491911889:32205..32268TCONS_00040964-exon-sc0002645-1491911889:32205..32268Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1510915933:32205..32268TCONS_00040964-exon-sc0002645-1510915933:32205..32268Clytia hemisphaericaexon
TCONS_00040964-exon-sc0002645-1575043694:32205..32268TCONS_00040964-exon-sc0002645-1575043694:32205..32268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002645supercontigsc0002645:28867..32268 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.804567	0	0	1.33517	1.40676	1.48505	1.19167	0.834318	1.89464	1.50462	1.42867	1.20719	1.82354	0.655898	0.603325	1.85812	1.01574	0.877061	0.734225	0.797718	0.466919	0.1892	0.344021	0.531501	0.790586	0	0	0	0.746409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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