TCONS_00040955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040955
Unique NameTCONS_00040955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040955 ID=TCONS_00040955|Name=TCONS_00040955|organism=Clytia hemisphaerica|type=transcript|length=806bp
TATTTAttgatctatcatcgatcttttatcgatcttatcgaccctatcga
ctcatactcgatttacgatcgataacaaatcgattaacgatcgatgacga
atcggtaaactcgattgaaatactacttacttcagtatacttcagtttga
tttgatgatattcATCTGTCCAGCTCGTTGAGCCCAACACGTATTATTTG
ATCGACAAGAGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTGT
GAGGTTCGTCGGGTATAGAGCACAGATATTTATCGAGTCGTTTCTTGAAG
GAATCTTTTGAACAGCCAGTGATATTTCGTATGTCAGAGGGAATACTGTT
GAAGAGTTTTGGACCCTGTACAGCTAAGCTCTCGCAAATAAATTTGCGAA
AGCTACTTCGTTCGATTGTTCGTAGTTCGCATTTTCGACCATGACGGCTT
GTAGTTGAAGACGAGACACCACCTTTTACAGTGCCATCTCCTTCagtgtg
gctgaaatttggtactatACCCTCTAGTATCGACCAAATATAAATAATTC
TGTATCTCTCTCTCCTCCTTTGTAGAGAatacattttcaacattttcaat
tgtTCCCAATAATCGAAAGCGCTAAggcctttgattttattgaagaagTT
CTTTCGTACTGATTCAATCTGTTCAATTTGGTGGATGCTGTTTGGTGACC
AAAGCTGAGAACagtcagttagggaaaccatccaggatcctgccattcta
taaaccagcaaaaactaaatgacacttgtaaacttaagtttcttaccatt
tcccaT
Run BLAST on NCBI

protein sequence of TCONS_00040955-protein

>TCONS_00040955-protein ID=TCONS_00040955-protein|Name=TCONS_00040955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MAGSWMVSLTDCSQLWSPNSIHQIEQIESVRKNFFNKIKGLSAFDYWEQL
KMLKMYSLQRRRERYRIIYIWSILEGIVPNFSHTEGDGTVKGGVSSSTTS
RHGRKCELRTIERSSFRKFICESLAVQGPKLFNSIPSDIRNITGCSKDSF
KKRLDKYLCSIPDEPHTTSRQTRLAESNALVDQIIRVGLNELDR
Run BLAST on NCBI

transcript from alignment at sc0002640:6356..7161

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040955 ID=TCONS_00040955|Name=TCONS_00040955|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0002640:6356..7161 (Clytia hemisphaerica)
Atgggaaatggtaagaaacttaagtttacaagtgtcatttagtttttgct
ggtttatagaatggcaggatcctggatggtttccctaactgactGTTCTC
AGCTTTGGTCACCAAACAGCATCCACCAAATTGAACAGATTGAATCAGTA
CGAAAGAActtcttcaataaaatcaaaggccTTAGCGCTTTCGATTATTG
GGAacaattgaaaatgttgaaaatgtatTCTCTACAAAGGAGGAGAGAGA
GATACAGAATTATTTATATTTGGTCGATACTAGAGGGTatagtaccaaat
ttcagccacactGAAGGAGATGGCACTGTAAAAGGTGGTGTCTCGTCTTC
AACTACAAGCCGTCATGGTCGAAAATGCGAACTACGAACAATCGAACGAA
GTAGCTTTCGCAAATTTATTTGCGAGAGCTTAGCTGTACAGGGTCCAAAA
CTCTTCAACAGTATTCCCTCTGACATACGAAATATCACTGGCTGTTCAAA
AGATTCCTTCAAGAAACGACTCGATAAATATCTGTGCTCTATACCCGACG
AACCTCACACTACGTCGCGACAAACAAGATTGGCTGAATCAAATGCTCTT
GTCGATCAAATAATACGTGTTGGGCTCAACGAGCTGGACAGATgaatatc
atcaaatcaaactgaagtatactgaagtaagtagtatttcaatcgagttt
accgattcgtcatcgatcgttaatcgatttgttatcgatcgtaaatcgag
tatgagtcgatagggtcgataagatcgataaaagatcgatgatagatcaa
TAAATA

Coding sequence (CDS) from alignment at sc0002640:6356..7161

>TCONS_00040955 ID=TCONS_00040955|Name=TCONS_00040955|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0002640:6356..7161 (Clytia hemisphaerica)
atggcaggatcctggatggtttccctaactgactGTTCTCAGCTTTGGTC
ACCAAACAGCATCCACCAAATTGAACAGATTGAATCAGTACGAAAGAAct
tcttcaataaaatcaaaggccTTAGCGCTTTCGATTATTGGGAacaattg
aaaatgttgaaaatgtatTCTCTACAAAGGAGGAGAGAGAGATACAGAAT
TATTTATATTTGGTCGATACTAGAGGGTatagtaccaaatttcagccaca
ctGAAGGAGATGGCACTGTAAAAGGTGGTGTCTCGTCTTCAACTACAAGC
CGTCATGGTCGAAAATGCGAACTACGAACAATCGAACGAAGTAGCTTTCG
CAAATTTATTTGCGAGAGCTTAGCTGTACAGGGTCCAAAACTCTTCAACA
GTATTCCCTCTGACATACGAAATATCACTGGCTGTTCAAAAGATTCCTTC
AAGAAACGACTCGATAAATATCTGTGCTCTATACCCGACGAACCTCACAC
TACGTCGCGACAAACAAGATTGGCTGAATCAAATGCTCTTGTCGATCAAA
TAATACGTGTTGGGCTCAACGAGCTGGACAGATga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025003XLOC_025003Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040955-proteinTCONS_00040955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040955-exon-sc0002640-1491911889:6356..7161TCONS_00040955-exon-sc0002640-1491911889:6356..7161Clytia hemisphaericaexon
TCONS_00040955-exon-sc0002640-1510915933:6356..7161TCONS_00040955-exon-sc0002640-1510915933:6356..7161Clytia hemisphaericaexon
TCONS_00040955-exon-sc0002640-1575043694:6356..7161TCONS_00040955-exon-sc0002640-1575043694:6356..7161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002640supercontigsc0002640:6356..7161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.9395	4.43931	11.2964	11.5872	19.2674	19.2594	16.7366	24.9296	8.76597	14.1104	10.2689	7.76426	9.22097	7.43756	3.02027	3.63902	3.2969	3.50385	4.35801	4.48944	6.95936	9.33303	1.07683	2.46571	10.1191	16.9745	5.31494	4.21372	3.24649	3.52683
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top