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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040950 ID=TCONS_00040950|Name=TCONS_00040950|organism=Clytia hemisphaerica|type=transcript|length=470bp
ATCTTACACTTACATATCATAACATTCGTGAATACGATGAGACATTGAGC
AAGTCATGTTTTCCTAAAGAAAAAGTGGACTTTTCAATTTGTAAAGGAGT
AAATAAAATGGTTGATTTTCTCGACGAGTCTGTTATTGAAGAATCAAAAG
CCTATGAAAAGTGTCTTTCAAGTTCTGAGGAAAGCCTTATAGAAGAAGCT
GAAAATGTTGTGCTCAAGGACACTGTTAAACTTCAAcagaaagaaatcaa
gaaagtcAACAAAGAGTCAAACTTACCCACAATGACCAAGTCACAAGCTA
ATGAGAAAATGAAAGAGATCAAAAGCTCAAACGCCTTCTTCAATCTCTTT
AATTGCTAGCCAATGGATAATATCTCAATGGAGAAGTTGTGTTTTACTAT
TACCAGTTTCATTTGGTCTTGAATATATACATTTAGCCTTTATAAGAACT
ATGAATTTAAGACTCGTTAG Run BLAST on NCBI protein sequence of TCONS_00040950-protein >TCONS_00040950-protein ID=TCONS_00040950-protein|Name=TCONS_00040950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
LTLTYHNIREYDETLSKSCFPKEKVDFSICKGVNKMVDFLDESVIEESKA
YEKCLSSSEESLIEEAENVVLKDTVKLQQKEIKKVNKESNLPTMTKSQAN
EKMKEIKSSNAFFNLFNC Run BLAST on NCBI transcript from alignment at sc0002640:4319..13204+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040950 ID=TCONS_00040950|Name=TCONS_00040950|organism=Clytia hemisphaerica|type=transcript|length=8886bp|location=Sequence derived from alignment at sc0002640:4319..13204+ (Clytia hemisphaerica)
ATCTTACACTTACATATCATAACATTCGTAAGTCACTTAGACATTATTTT
GTATGATCCAAGTATAATCAAATTTACGAATCATATAGTAGACTCAGGTT
GAGCCCGAGTCAGAGTTTAGATTCACATCGATCAGTCGTCAAGCACAAGA
AATCGCACTGGTTTGTAAGAGTTTATATTATATAATTTTCTTCAAGACTG
GCTTCTTTTTAAAGCACTTCTATGTTCTATGCCTATGGGTGCTTATCATC
AAAGGCaacaggccatattttagaaaggcaaggcagcgtCTGTTGATgac
caaaaagggcactttccagtgtttttccactaaaaaggctgtttttacca
atatttttgtagtttcaagaggggcagcgtccgataaccggacgcttaaa
gggcatgaaaaatggcctgggCAATGCACCGGACGCATCAGACACTGTGG
ACAGGTTTTTGCTTTGGCATTGGATGATTAtcaccagacgtccgcgctcg
ataggattgaTCATCGGAACAGAtcaatatgtgatcgatggattacttaa
cgatccggataggagatcgatggaagattcagccattaaaaagtcttgag
tatcgatcctttgttgatccattatcgagctagctTGTTAATTATCTAGA
AGAgaataacatttttaatgactccCAACATGGCTTTCGACAAGGTATCT
TGTTTGAGTCAACTCCTTGAACATTATGATACAATACTATCATACCTTGA
GAGAGGTATTAATGTCGACACAATTTATTTGGACTTCAGTAAGGCATTCG
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcgcattttttatcttcttactttcttcattttcaatgaagcactc
aaagtttactgaaagtaagcacataagatattcttataattaatgatact
CATTGATGAAACACGCTTCGTTGTGcactgcggtggagtgcatgacgtaa
ctcgcgcggcaactaactcgccttctgttggaagatcatattgggcgttt
tggcgttaccaaccattgaagcagcgggcgcctctgtctttccgcaactc
ttaccaccattttagatggtctTAACactagatccaaaagggcgccataa
tcttggaagatgatttgttttggtctccggctttgggaagtagcaatgtt
tttggttgttttcaatGGGAAATGGTAAGAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAtgggaaatggta
agaaacttaagtttacaagtgtcatttagtttttgctggtttatagaatg
gcaggatcctggatggtttccctaactgactGTTCTCAGCTTTGGTCACC
AAACAGCATCCACCAAATTGAACAGATTGAATCAGTACGAAAGAActtct
tcaataaaatcaaaggccTTAGCGCTTTCGATTATTGGGAacaattgaaa
atgttgaaaatgtatTCTCTACAAAGGAGGAGAGAGAGATACAGAATTAT
TTATATTTGGTCGATACTAGAGGGTatagtaccaaatttcagccacactG
AAGGAGATGGCACTGTAAAAGGTGGTGTCTCGTCTTCAACTACAAGCCGT
CATGGTCGAAAATGCGAACTACGAACAATCGAACGAAGTAGCTTTCGCAA
ATTTATTTGCGAGAGCTTAGCTGTACAGGGTCCAAAACTCTTCAACAGTA
TTCCCTCTGACATACGAAATATCACTGGCTGTTCAAAAGATTCCTTCAAG
AAACGACTCGATAAATATCTGTGCTCTATACCCGACGAACCTCACACTAC
GTCGCGACAAACAAGATTGGCTGAATCAAATGCTCTTGTCGATCAAATAA
TACGTGTTGGGCTCAACGAGCTGGACAGATgaatatcatcaaatcaaact
gaagtatactgaagtaagtagtatttcaatcgagtttaccgattcgtcat
cgatcgttaatcgatttgttatcgatcgtaaatcgagtatgagtcgatag
ggtcgataagatcgataaaagatcgatgatagatcaaTAAATAATCGATA
TACTAATgttaagcttaaaaaaatctagattatcaatccatcaatcacat
atcgatccgtcatcgagacGTTCCGATGATCAATCCTATccagcgcggac
gtctggttaTCAGGGTTGTAAAAGTTTTCTCACTGAACACCAGGTACACC
AGGCCTTTAGTGCTCCTGTAGTAAGTGGTGCGTAGGCAGGGTTTTTtgtc
tatctatctatttaatAAGTGACATACCGTAAGTTGGCATAAAATACAAT
CAAGTGTCCTGTACGCAAATCGATCTTTTGTCCCGCTGAACACCTGCATC
CTCTGTTTGTCCCgtattttcaaatattcattAGAATTACACTCAAAGTc
acacaaaaatgacaaaattcaGCCAACAACGAGGAAGATGATTGATTAAt
ccaggcgatgtcaatcgaaaatcaaaatcaattgaacttaatcgaacgat
aggtgttcgattaggtcacaagtgttacgcgtaagccaaatcgcgtatta
cgaacaacctctaaattgccgagtaggtaccggttgaaacacttgtgagA
GGTCAGACACAATTTATTGTTTGGTTAGTGTCCTAGAAGCTCTAAAAAAT
GGGTCGGTCAGTAGCTAAAATTGGataacctttttttatttttcccacca
aaaacctcaatttttgaaatcatccATTCTTCGAGCAATTGCACAATCCT
GGATTCCAACACAATGGTATAAGCTGCCTTATTTTATATTTCGTTTCTGT
GCGCGAAGTGGATGTGGACATGAAAAGGAGGAAAGAAGGATTTGATTTTT
CTGACTCaaaatgaagcattttttctcaaatacttAGAGTCGGTCTGAGG
ACACAAatatcaattgggcctggccttaCCAAACCGAATCAAACAGTCAT
TAAACCGAGAAATTCCAGTAAAGTTTGATTACTTCGACTGATTCGATGTG
CTTTTGTTCACAAATCATTCTTGCAGCGCATGAACAACTCTTTTCTGTNG
CAGCCAACAACGAGGAAGATGATTGATTaatccaggggatgtcaatcgaa
aatcaaaatcaattgaactTAATCGAgcgataggtgttcgattgggtCAC
AAGTGTTACgtgtaagccaaatcgcgtattacgaacaacctctaaattgc
cgagtaggtaccggttgaaacacttgtgagAGGTCAGACACAATTTATTG
TTTGGTTAGTGTCCTAGAAGCTCTAAAAAATGGGTCGGTCAGTAGCTAAA
ATTGGataacctttttttatttttcccaccaaaaacctcaatttttgaaa
tcatccATTCTTCGAGCAATTGCACAATCCTGGATTCCAACACAATGGTA
TAAGCTGCCTTATTTTATATTTCGTTTCTGTGCGCGAAGTGGATGTGGAC
ATGAAAAGGAGGAAAGAAGGATTTGATTTTTCTGACTCaaaatgaagcat
tttttctcaaatacttAGAGTCGGTCTGAGGACACAAatatcaattgggc
ctggccttaCCAAACCGAATCAAACAGTCATTAAACCGAGAAATTCCAGT
AAAGTTTGATTACTTCGACTGATTCGATGTGCTTTTGTTCACAAATCATT
CTTGCAGCGCATGAACAACTCTTTTCTGTTAATCCAATGATTCTTGGGGA
TCGTTTAGGCTAGAGCTGTTGCGCTAACAATAACAggaaccatttgagct
acaaaaacacTGACGGTCTAatcttaaactcctatatcggGATTAGAAAC
TAGGGCTAGTCTTATTTCTTTTATCTTCTCCTTTGtatcaatacaatgct
gacaagttgaccagagttgacacaacacattgacaagtaatccctgagaa
aAGTTTATATATTAAaattctgcaacaaaaacgaaaatggtctcttctac
tgattgctttaTCAACACTCCTTACAGCTATTTATCAAATTTctaccaat
gaggttgccgtaTTTCAAACGCCCCTTCCTTTTGGCACTCATGGcttttc
agtgccttgcacggctggcggctgtaaaatccccccttcatatatttgtt
tcaatctgtgattCTAAGGCCTTGGGATTTTCTCATCCTTCAATtttctg
aagaaagcgggaatccaatgcaagagttagattgtcaacaaagtgccata
aaaaatcattgaataaaagaagaaatttaaatcttagatattttcatttt
gaagaattggtgccagaatgaaacatggaaaagttttattttttattggt
tcaatcgaaataagggaatttagaaaattttctttgtttgttttttttgt
agaaacccctgtaactatgggcaagtACCCCATTGCTAAGATGTtagctt
gaaatcgaaagtgaaaccactgaaaatgaaagtaaaattggtccgcactc
caaatcccgtaatcttgaaaTTTGATGGTTCAATTAAGAAAATTGGTTCA
ATAGGATTCGGTTGACTTTGCCTGGATTTAtgataaaaaagtcatttaat
ttaACATAACTGCGAGATTTAATAGCCCCTCGTCAAGTAAGGCATTGTAA
TACCACAGGCGTCAAAAAGAAGGGCAGTGTGAAATGCGACAATCTTATTG
GTGGAAATTAAATATAAACAGTCTGCGAAGGAGCACTACAAAGCAATCAG
TTGAAGAGACTACTTTCGTGGAAGAGAAGATTATATCTATCTCATCtaaa
atttgagtaatttggTTAGGAACATTGATCTAAGCTTATAAAAAGTGATT
CTTATGGATAAAGATTCAATTTTTgagacaaaaaaatctttttttgaaaa
ttcagtcaTCCTTTACCAATTATGGTATATATCTGCTTTCATgcaaaatt
caattcaaagaaaaattaatgattcaGTATTCAACAAAGTCAAAGTCATT
GGTAGAgtgcttttaaaaaaatatcaaatttgtcccatttttctataaaa
acacctCAAGAAACCAAGATTTTGTGATTATAAATAGAAGAAGTATAGAA
GAAGAAGGATTTAATATAAAAGAATCGTATCATCTAATCTTATTGTTATT
ACTATGATAagttattttttggacctaccttggaggttctttaaattaac
ccatgactttttgtgaaattgcttcatttgtttttcagattttttgtgtA
AAGATGCTCTGAAAAGTGGCTGAAGCTGTTTTTTCCGGATATTTTCTTTG
ACCGACaaaattggattttcttatttgggaccattcaaaaagtatgtacg
ctcgaaatggcaaatttttgactccccctcccccttttACGCTTTCGTAC
GCTTTATGGTGTACCCCCTTCAGCGTATgtacgctttttagtacaccccc
cccctaaccaaagtcgaaacttgaaactcttgtaacagtagaatatgtag
gtatccaatcgtatttataacaaagtttcaagaaattaaaagaatctata
aaaataccaaaggagaaatgaaaaataacaatcgcaaaaacaattttttg
atgtgaaaatattgccgttttctctcaaaaaagacagtttaggaaaaGTT
ACGAGCCTACGTACTTCTCCTCGAGGACCCCCTTCCCCTCGTACGCTTTT
AGGAGTACCCCCCTCCTCCCTCTcaagcgtacgtactttttgaatggtcc
ctttGGGGAGATTCCTTTTTTTGTCATTAATAAGGGAAATGAGCATTTCA
TATCCTTACAGGGGATGGTTAATGGAATCAGCCCAATTGGCTTGGGCTGC
TTGGgctattttctgattttttagtttatagtagggggaaattttttaaa
atcacccgatttttttagtcaaagcacttgttatacatttttggaaagta
caACTATAGAGGAGTCCGAATTTCAATGTTTCCAATtatttttcggacac
tttggtgtgattttcggacaaatatgacggtctcaggcaaaaatcatagg
gttaaaaattaatgaaaattttagctcgagaaaacNtaaaaattaatgaa
aattttagcttgagaaaacggagacctgttgtatatttttggaaatttct
caaaaaattaggattagagatatactagccgtcacccggcgtcgcacccg
ccgagtagagtgttgttgaacacatcaaaagccctttggatggtggggag
gGTAAAAAGATCTGGTTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatgaggggtcaa
cgacctcccaactccttttcaaactcgagatatcgcattttgaagttttt
ctcaaatctgtgacgtcattgggtccctttacccctaatgttgaaaacgg
tcaattcgcgaatttcggaatttttgcggtcaacgggtagcttatgcccc
aagggtcccaaaaaactaaaaaacgtcaattatttccacgggaaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgctttcgttttcaaccacccatccatccatccaaccaaaatcg
gtcacgtaactctcgaacccccatctcaaaaatccataatggccccccAC
AGCTCAATCTATATTACTAAACGTAGAATTCGTATTGAAATCACCTATAA
TTGCAATATATGTACCTAACTCGaaatattgagcttcaaaaagcgcaaaa
actggacaaaacagctgttatctggctgaaaaacacggttttcaagggtt
gaTATCTTGAgataggtacagaaatcacctataatTGCAATATATGTCTA
ATCTTAAattcatatttgtccgaaaatcacaccaaagtgttcgaaaaaaa
attggaaacattgaaattttgattcccctaccccttagctttccaaaaat
gtataacaagtgctttgaccaaaataatcgagcgacctcaaaaaaacaaa
caaatttcccccctactattatattttcaaactttctttgccattttttg
tttatatctttCATCAGTATTTCAGCTTATTTTGGGAATTTTCTGTTTTA
AAGAGAATGAATTGGATCGGAGGAGCAAGAAATAGATTAAAtagaagaaa
tgaaaaaagaaagcaGGAACAGTTTTTTGAAGATAAACGAAAAGCAAAAC
AGTTGAATAATACCACTGTCACCAGCCATTTTCAAAGTAGCAGCTTACAT
CTGAGCCAAGACATTCTGTCCATCAAAACTCTTTCAAATGCATACAGTGA
AAAATCTGTGGAAAGTTGTAAACCACCAAAACATGCGAGATTTGTTGATT
TAGAGCATGGAAAGTCAAACTCTAGATTTGTAAGCCTTAAAAGTCATGAT
GACAGCTTCGAAAAGAATATCAAGCCCTCAAAACTTCCTTTAGGTGAATA
CGATGAGACATTGAGCAAGTCATGTTTTCCTAAAGAAAAAGTGGACTTTT
CAATTTGTAAAGGAGTAAATAAAATGGTTGATTTTCTCGACGAGTCTGTT
ATTGAAGAATCAAAAGCCTATGAAAAGTGTCTTTCAAGTTCTGAGGAAAG
CCTTATAGAAGAAGCTGAAAATGTTGTGCTCAAGGACACTGTTAAACTTC
AAcagaaagaaatcaagaaagtcAACAAAGAGTCAAACTTACCCACAATG
ACCAAGTCACAAGCTAATGAGAAAATGAAAGAGATCAAAAGCTCAAACGC
CTTCTTCAATCTCTTTAATTGCTAGCCAATGGATAATATCTCAATGGAGA
AGTTGTGTTTTACTATTACCAGTTTCATTTGGTCTTGAATATATACATTT
AGCCTTTATAAGAACTATGAATTTAAGACTCGTTAG Coding sequence (CDS) from alignment at sc0002640:4319..13204+ >TCONS_00040950 ID=TCONS_00040950|Name=TCONS_00040950|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0002640:4319..13204+ (Clytia hemisphaerica)
CTTACACTTACATATCATAACATTCGTGAATACGATGAGACATTGAGCAA
GTCATGTTTTCCTAAAGAAAAAGTGGACTTTTCAATTTGTAAAGGAGTAA
ATAAAATGGTTGATTTTCTCGACGAGTCTGTTATTGAAGAATCAAAAGCC
TATGAAAAGTGTCTTTCAAGTTCTGAGGAAAGCCTTATAGAAGAAGCTGA
AAATGTTGTGCTCAAGGACACTGTTAAACTTCAAcagaaagaaatcaaga
aagtcAACAAAGAGTCAAACTTACCCACAATGACCAAGTCACAAGCTAAT
GAGAAAATGAAAGAGATCAAAAGCTCAAACGCCTTCTTCAATCTCTTTAA
TTGCTAGCTTACACTTACATATCATAACATTCGTGAATACGATGAGACAT
TGAGCAAGTCATGTTTTCCTAAAGAAAAAGTGGACTTTTCAATTTGTAAA
GGAGTAAATAAAATGGTTGATTTTCTCGACGAGTCTGTTATTGAAGAATC
AAAAGCCTATGAAAAGTGTCTTTCAAGTTCTGAGGAAAGCCTTATAGAAG
AAGCTGAAAATGTTGTGCTCAAGGACACTGTTAAACTTCAAcagaaagaa
atcaagaaagtcAACAAAGAGTCAAACTTACCCACAATGACCAAGTCACA
AGCTAATGAGAAAATGAAAGAGATCAAAAGCTCAAACGCCTTCTTCAATC
TCTTTAATTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040950-exon-sc0002640-1491911889:4319..4345 | TCONS_00040950-exon-sc0002640-1491911889:4319..4345 | Clytia hemisphaerica | exon |
| TCONS_00040950-exon-sc0002640-1510915933:4319..4345 | TCONS_00040950-exon-sc0002640-1510915933:4319..4345 | Clytia hemisphaerica | exon |
| TCONS_00040950-exon-sc0002640-1575043694:4319..4345 | TCONS_00040950-exon-sc0002640-1575043694:4319..4345 | Clytia hemisphaerica | exon |
| TCONS_00040950-exon-sc0002640-1491911889:12762..13204 | TCONS_00040950-exon-sc0002640-1491911889:12762..13204 | Clytia hemisphaerica | exon |
| TCONS_00040950-exon-sc0002640-1510915933:12762..13204 | TCONS_00040950-exon-sc0002640-1510915933:12762..13204 | Clytia hemisphaerica | exon |
| TCONS_00040950-exon-sc0002640-1575043694:12762..13204 | TCONS_00040950-exon-sc0002640-1575043694:12762..13204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002640 | supercontig | sc0002640:4319..13204 + |
Blast
The following BLAST results are available for this feature:
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