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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040948 ID=TCONS_00040948|Name=TCONS_00040948|organism=Clytia hemisphaerica|type=transcript|length=1095bp
ATCAAACGAGAAATCAACGGTAGCTATAAATTACGTAAGTTAAAAAATCA
TCCTCTCAGTTTCGAAAAGAGGAAGAAAATGGTCACACAAAAGAGACTGG
ATCACATAGTTTAACCAGTTACAAATAAGGGAGTGGTTAATTGTGCAAAT
TACATCTGAACTTTCCGATGTAGTATAAATAAGGGTAAGGACTCACTGAG
AAGTCATGCAAAGCAAAAGAAGCCATTGACTTGACTGACAAGACAAGAGA
CAcacacaaaacaaaatgaaggGATTGACAACACTCATTTGCATCGCTGT
AGTAGCAGTTCACAGTGCATGTGGGGCGGTCATCAGCAACGACTTAAACT
GCAAGAACACGAACGATAAGTGTGATAGATGGGCCAAAGGAGGTAAATGC
CATGAAAACCCAGTCTACATGATTGTCAGCTGTGCTCCCGCCTGTGACGT
CTGCTTTCACGGTGATAAACGTTGGTCATGCAGTTATAAGGCAAGACGTG
GAGATTGCACCACAAGTCCTTCATCCATGGATAAGCTTTGTCCATCAAGT
TGCAGTGCTCAAACACAAGAAGATAAACGTTTGGCAGGATGTTTAAATGC
GTGCAGTGAATTCGCATGCGCATCAGATACAAACCTTCAAAAAGGATGTA
ATCAAATGTTTTCGTGTACGCATGCGTGTAAAATGCGACATCTTGGAGTC
ACTGTCGGTAGGTGCCGAACGAAATGTGAGCGCAACGGACAATCTGGCTG
CTTTCCGAAGGTCAGGGGGTACACATTCAATTTATGCGTCGATTGCTCAA
GAGAAGGTTGCTCAACCTATCCAACCGTTGACGAATGTAAAATTGGTTGT
GACTACTTTTAAAATGGATAATAAAATCCAAAGATTGGATATTATCTAAG
GTTCGCATATCATTTTTTTTAGTTCTTAAAAACgggttattttttattta
gacAATTAAATTCTTTTATATAAGATTACATAAAACTTGAGGGATGATCT
GAGGTTAATTTCAGATCCTTTGCCTACTGAAATCTCTGTCTAGCTTACCT
TGCTATTTcttcaaataaattttacctTTACTATCTAAActtgag Run BLAST on NCBI protein sequence of TCONS_00040948-protein >TCONS_00040948-protein ID=TCONS_00040948-protein|Name=TCONS_00040948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MKGLTTLICIAVVAVHSACGAVISNDLNCKNTNDKCDRWAKGGKCHENPV
YMIVSCAPACDVCFHGDKRWSCSYKARRGDCTTSPSSMDKLCPSSCSAQT
QEDKRLAGCLNACSEFACASDTNLQKGCNQMFSCTHACKMRHLGVTVGRC
RTKCERNGQSGCFPKVRGYTFNLCVDCSREGCSTYPTVDECKIGCDYF Run BLAST on NCBI transcript from alignment at sc0002639:21140..24113- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040948 ID=TCONS_00040948|Name=TCONS_00040948|organism=Clytia hemisphaerica|type=transcript|length=2974bp|location=Sequence derived from alignment at sc0002639:21140..24113- (Clytia hemisphaerica)
ATCAAACGAGAAATCAACGGTAGCTATAAATTACGTAAGTTAAAAAATCA
TCCTCTCAGTTTCGAAAAGAGGAAGAAAATGGTCACACAAAAGAGACTGG
ATCACATAGTTTAACCAGTTACAAATAAGGGAGTGGTTAATTGTGCAAAT
TACATCTGAACTTTCCGATGTAGTATAAATAAGGGTAAGGACTCACTGAG
AAGTCATGCAAAGCAAAAGAAGCCATTGACTTGACTGACAAGACAAGAGA
CACACACAAAACAAAATGAAGGGATTGACAACACTCATTTGCATCGCTGT
AGTAGCAGGTAACATTTTACTTTTTCTCGACATTTGAATACAAAAGATAG
TCCAAACTTTAAACCCGTGCCTCAATTTGGGATGAGAATTTCTTCGGTGT
CAAAAAAAAACTTCCGGTTCAGAGGCAAAAATTAAAATAAGTTTTAAGCG
TAACAAAATAAAAATCACATTTGAGTCCCACTGGGAAGGAAAGTTTTTTA
CTTTGAATCTTGACATTTTGTTTACAGTTCACAGTGCATGTGGGGCGGTC
ATCAGCAACGACTTAAACTGCAAGAACACGAACGATAAGTGTGATAGATG
GGCCAAAGGAGGTAAATGCCATGAAAACCCAGTCTACATGATTGTCAGCT
GTGCTCCCGCCTGTGACGTCTGTAAGTACATACGCTACTAATATAATTTT
ATTACTATTCTCCTTAACTCGAACATGTTTTCTTGTCCCGTCAGTTAACC
TTATAAACCTTACTTCATAACTACATAATACTCAATAATTTCCTTAATAC
ACCTTTTCGACCGTAGCCGCTAATTGCCGCGCGGGCATTTTTTACCACCC
TAAAATCGTCCGTGTCTTTTTTTCGCGCCTGAAGACAATAGAAAAATATG
TCAAAAAGGGATTGGATCGAGTTTAGGGTGGTAAAAAATGCCCGCGCGGC
AATTGGCGGCTACGGTCGAAATGGTGTATTCAAACAAATTTCTGTTTTCC
GCCCGTGTTCGAGACTCGACTGTATAAGGAGCGCAGAGGAGCGTTCCCAC
AAAGTGTTACTTTTAAGTCAAGAAGACTTGCTTGATATCAGTTGATTTAA
GCTAGGTTTGTTACAGTAGGGTACCTGCCACACCTTAAAAATCACGTGAT
CAATGTGAAAAGAAGAAATCCTTTTGCCCCGTAAAGCTTTATTTGTTTGT
TATAAACAATATCAACTTTTAGAAAGACTCTATCTTTTGCAGTAGCTTGG
AAATTAACGACTTTGAAATCCGACTTCTATAAATACCATTCTTCTTATGG
CAGGCTTTCACGGTGATAAACGTTGGTCATGCAGTTATAAGGCAAGACGT
GGAGATTGCACCACAAGTCCTTCATCCATGGATAAGCTTTGTCCATCAAG
TTGCAGTGCTCAAACACNTATTCTCCTTAACTCGAATATGTTTTCTTGTC
CCGTCAGTTAACCTTATAAACCTTACTTCATAACTACATAATACTCAATA
ATTTCCTTAATTCAAACAAATTTCTGTTTTCCGCCCGTGTTCGAGAGTCG
ACTGTATAAGGAGCGTTCCCACAAAGTATTACTTTTAAGTCAAGAAGACT
TGCTTGATATCAGTTGATTTAAGCTAGGTTTGTTACAGTAGGGTACCTGC
CACACCTTAAAAATCACGTGATGAATGTGAAAAGAAGAAATCCTTTTGCC
CCGTAAAGCTTTATTTGTTTGTTATAAACAATATCAACTTTTAGAAAGAC
TCTATCTTTTGCAGTAGCTTGGAAATTAACGACTTTGAAATCCGACTTCT
ATAAATACCATTCTTCTTGTGGCAGGCTTTCACGGTGATAAACGTTGGTC
ATGCAGTTATAAGGCAAGACGTGGAGATTGCACCACAAGTCCTTCATCCA
TGGATAAGCTTTGTCCATCAAGTTGCAGTGCTCAAACACAAGAAGGTAAT
GCTACGTTCATCTTATCCTACCGTGTGCTTAATAAACGCCCAACGCTTGT
TAGTTTTTTTATTTCTTCCACACCCTGGACCTTTTAAGGACCCCCTTTCG
CGTTTATTTGTATTTTCAGCTATCAAAAGAAAATTCCCTTATTTTGCTCT
AAATAGCTAAATTTTAGTCTATAATTACCTTATTTTGAAGTACAATTTCC
AACCCCCAGGTAATAAGTCCCCTCCCGTTTATCAAAATTTGAAAATATTT
ACCGCATTAAAACTCGAATGAAGATCTATTTTTGAGATTTAAACTATCGC
CAAACGATAATTCCCGATATCTGGGTTAACCCGAGCCTACTATTATTATT
TGTGTAAACTGTATTTTACCTTTTTGATTCTTTGATTAATAGAACTAATT
AAAATTCGATTGCTTAATGAATATCAAGATGCCGTTGATTGGTGCAGGAT
CCATTTGCATCTCATTCGAACCATTACATAATGTTTGCATTTCACTTGTA
GATAAACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGC
ATCAGATACAAACCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGC
ATGCGTGTAAAATGCGACATCTTGGAGTCACTGTCGGTAGGTGCCGAACG
AAATGTGAGCGCAACGGACAATCTGGCTGCTTTCCGAAGGTCAGGGGGTA
CACATTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCTCAACCTATC
CAACCGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAAAATGGATAA
TAAAATCCAAAGATTGGATATTATCTAAGGTTCGCATATCATTTTTTTTA
GTTCTTAAAAACGGGTTATTTTTTATTTAGACAATTAAATTCTTTTATAT
AAGATTACATAAAACTTGAGGGATGATCTGAGGTTAATTTCAGATCCTTT
GCCTACTGAAATCTCTGTCTAGCTTACCTTGCTATTTCTTCAAATAAATT
TTACCTTTACTATCTAAACTTGAG Coding sequence (CDS) from alignment at sc0002639:21140..24113- >TCONS_00040948 ID=TCONS_00040948|Name=TCONS_00040948|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0002639:21140..24113- (Clytia hemisphaerica)
ATAAACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGCA
TCAGATACAAACCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGCA
TGCGTGTAAAATGCGACATCTTGGAGTCACTGTCGGTAGGTGCCGAACGA
AATGTGAGCGCAACGGACAATCTGGCTGCTTTCCGAAGGTCAGGGGGTAC
ACATTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCTCAACCTATCC
AACCGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAAGCTTTCACGG
TGATAAACGTTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCACCA
CAAGTCCTTCATCCATGGATAAGCTTTGTCCATCAAGTTGCAGTGCTCAA
ACACAAGAAGTTCACAGTGCATGTGGGGCGGTCATCAGCAACGACTTAAA
CTGCAAGAACACGAACGATAAGTGTGATAGATGGGCCAAAGGAGGTAAAT
GCCATGAAAACCCAGTCTACATGATTGTCAGCTGTGCTCCCGCCTGTGAC
GTCTATGAAGGGATTGACAACACTCATTTGCATCGCTGTAGTAGCAGATA
AACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGCATCA
GATACAAACCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGCATGC
GTGTAAAATGCGACATCTTGGAGTCACTGTCGGTAGGTGCCGAACGAAAT
GTGAGCGCAACGGACAATCTGGCTGCTTTCCGAAGGTCAGGGGGTACACA
TTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCTCAACCTATCCAAC
CGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAAGCTTTCACGGTGA
TAAACGTTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCACCACAA
GTCCTTCATCCATGGATAAGCTTTGTCCATCAAGTTGCAGTGCTCAAACA
CAAGAAGTTCACAGTGCATGTGGGGCGGTCATCAGCAACGACTTAAACTG
CAAGAACACGAACGATAAGTGTGATAGATGGGCCAAAGGAGGTAAATGCC
ATGAAAACCCAGTCTACATGATTGTCAGCTGTGCTCCCGCCTGTGACGTC
TATGAAGGGATTGACAACACTCATTTGCATCGCTGTAGTAGCAGATAAAC
GTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGCATCAGAT
ACAAACCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGCATGCGTG
TAAAATGCGACATCTTGGAGTCACTGTCGGTAGGTGCCGAACGAAATGTG
AGCGCAACGGACAATCTGGCTGCTTTCCGAAGGTCAGGGGGTACACATTC
AATTTATGCGTCGATTGCTCAAGAGAAGGTTGCTCAACCTATCCAACCGT
TGACGAATGTAAAATTGGTTGTGACTACTTTTAAGCTTTCACGGTGATAA
ACGTTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCACCACAAGTC
CTTCATCCATGGATAAGCTTTGTCCATCAAGTTGCAGTGCTCAAACACAA
GAAGTTCACAGTGCATGTGGGGCGGTCATCAGCAACGACTTAAACTGCAA
GAACACGAACGATAAGTGTGATAGATGGGCCAAAGGAGGTAAATGCCATG
AAAACCCAGTCTACATGATTGTCAGCTGTGCTCCCGCCTGTGACGTCTAT
GAAGGGATTGACAACACTCATTTGCATCGCTGTAGTAGCAGATAAACGTT
TGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGCATCAGATACA
AACCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGCATGCGTGTAA
AATGCGACATCTTGGAGTCACTGTCGGTAGGTGCCGAACGAAATGTGAGC
GCAACGGACAATCTGGCTGCTTTCCGAAGGTCAGGGGGTACACATTCAAT
TTATGCGTCGATTGCTCAAGAGAAGGTTGCTCAACCTATCCAACCGTTGA
CGAATGTAAAATTGGTTGTGACTACTTTTAAGCTTTCACGGTGATAAACG
TTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCACCACAAGTCCTT
CATCCATGGATAAGCTTTGTCCATCAAGTTGCAGTGCTCAAACACAAGAA
GTTCACAGTGCATGTGGGGCGGTCATCAGCAACGACTTAAACTGCAAGAA
CACGAACGATAAGTGTGATAGATGGGCCAAAGGAGGTAAATGCCATGAAA
ACCCAGTCTACATGATTGTCAGCTGTGCTCCCGCCTGTGACGTCTATGAA
GGGATTGACAACACTCATTTGCATCGCTGTAGTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040948-exon-sc0002639-1575043694:23806..24113 | TCONS_00040948-exon-sc0002639-1575043694:23806..24113 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1575043694:23443..23586 | TCONS_00040948-exon-sc0002639-1575043694:23443..23586 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1575043694:22169..22288 | TCONS_00040948-exon-sc0002639-1575043694:22169..22288 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1575043694:21140..21662 | TCONS_00040948-exon-sc0002639-1575043694:21140..21662 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1510915933:23806..24113 | TCONS_00040948-exon-sc0002639-1510915933:23806..24113 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1510915933:23443..23586 | TCONS_00040948-exon-sc0002639-1510915933:23443..23586 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1510915933:22169..22288 | TCONS_00040948-exon-sc0002639-1510915933:22169..22288 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1510915933:21140..21662 | TCONS_00040948-exon-sc0002639-1510915933:21140..21662 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1491911889:23806..24113 | TCONS_00040948-exon-sc0002639-1491911889:23806..24113 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1491911889:23443..23586 | TCONS_00040948-exon-sc0002639-1491911889:23443..23586 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1491911889:22169..22288 | TCONS_00040948-exon-sc0002639-1491911889:22169..22288 | Clytia hemisphaerica | exon |
| TCONS_00040948-exon-sc0002639-1491911889:21140..21662 | TCONS_00040948-exon-sc0002639-1491911889:21140..21662 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002639 | supercontig | sc0002639:21140..24113 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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