TCONS_00040947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040947
Unique NameTCONS_00040947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040947 ID=TCONS_00040947|Name=TCONS_00040947|organism=Clytia hemisphaerica|type=transcript|length=525bp
CGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGATTGGTTACT
TCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAA
AGATTTGGATCATAAATGCGACGGACTTTGGAATACAATCAATGAACTTA
AAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGG
GCTTCGTCAGCAAAAACGAAAAGTAACAGGTGATCTCAGTTGATCCTTTT
TAATggttatgtttttttgtaaaatgcagaacttttttataattttagac
TGTTTCTCGAGTCTGATTCTGTGACCTCTTATTTTGAGGGCAAAATTTTA
AATCTGTAGAGAGAGAGTAGATTTTTATAggcatacacgctttttttata
agaatattttctataagaatatcagggtgaaaattggccaaatcgtaaga
ataccctaagaataccctctaggttgagtttcacagaatttgataaaaat
acagtcattttgtatttggttaaca
Run BLAST on NCBI

transcript from alignment at sc0002639:2488..3253+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040947 ID=TCONS_00040947|Name=TCONS_00040947|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at sc0002639:2488..3253+ (Clytia hemisphaerica)
CGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGTTCGTATAT
TTTCACTTGTATTTAATGCTTTATTCATCGTTTATAGCCCCCCTTTAAGA
GCAATATGATTTTAAGTGTATGGTCATACAGTAACCATAAATGCCGAAAA
TCCCCGGTTGGAAGATGTTTTAAAAAAAGGCGTGATTAATCGAGAATGAA
GGTCTGTTTCAAGGTCATATTTCCCTGTTGGAGgagacaattaaaaaaaa
tcttgaaaatcatCTTATGTTTTCTTTATAGATTGGTTACTTCAGATGTC
ATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAGATTTGGA
TCATAAATGCGACGGACTTTGGAATACAATCAATGAACTTAAAAAAACTC
GCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCGTCA
GCAAAAACGAAAAGTAACAGGTGATCTCAGTTGATCCTTTTTAATggtta
tgtttttttgtaaaatgcagaacttttttataattttagacTGTTTCTCG
AGTCTGATTCTGTGACCTCTTATTTTGAGGGCAAAATTTTAAATCTGTAG
AGAGAGAGTAGATTTTTATAggcatacacgctttttttataagaatattt
tctataagaatatcagggtgaaaattggccaaatcgtaagaataccctaa
gaataccctctaggttgagtttcacagaatttgataaaaatacagtcatt
ttgtatttggttaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024997XLOC_024997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040947-exon-sc0002639-1491911889:2488..2527TCONS_00040947-exon-sc0002639-1491911889:2488..2527Clytia hemisphaericaexon
TCONS_00040947-exon-sc0002639-1510915933:2488..2527TCONS_00040947-exon-sc0002639-1510915933:2488..2527Clytia hemisphaericaexon
TCONS_00040947-exon-sc0002639-1575043694:2488..2527TCONS_00040947-exon-sc0002639-1575043694:2488..2527Clytia hemisphaericaexon
TCONS_00040947-exon-sc0002639-1491911889:2769..3253TCONS_00040947-exon-sc0002639-1491911889:2769..3253Clytia hemisphaericaexon
TCONS_00040947-exon-sc0002639-1510915933:2769..3253TCONS_00040947-exon-sc0002639-1510915933:2769..3253Clytia hemisphaericaexon
TCONS_00040947-exon-sc0002639-1575043694:2769..3253TCONS_00040947-exon-sc0002639-1575043694:2769..3253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002639supercontigsc0002639:2488..3253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.605865	2.7644	0	0	0	0	0	1.7006	0	1.00092	0	0	0	0.0559562	1.31522	2.40436	2.56494	0.288616	1.44266	4.59544	0.84145	6.39201	0	0	1.77178	3.23178	0	2.08447
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top