TCONS_00040946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040946
Unique NameTCONS_00040946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040946 ID=TCONS_00040946|Name=TCONS_00040946|organism=Clytia hemisphaerica|type=transcript|length=645bp
ACCACCGATGCCTTCGAAAACCATGCGTAATATTGTGGTGCAAGTCAAGA
AGTTGCGTGAAACAATGGCCGCCATTTTGTCCGAAGAACAACTTTAAAGA
CTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGC
CTCAGCACGGATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTG
AATAAGTTGACGGGTTTCAAAGATTTGGATCATAAATGCGACGGACTTTG
GAATACAATCAATGAACTTAAAAAAACTCGCAAAAAACATGAACAACATT
CATCGAAAAGTCAGCAGCGGGCTTCGTCAGCAAAAACGAAAAGTAACAGG
TGATCTCAGTTGATCCTTTTTAATggttatgtttttttgtaaaatgcaga
acttttttataattttagacTGTTTCTCGAGTCTGATTCTGTGACCTCTT
ATTTTGAGGGCAAAATTTTAAATCTGTAGAGAGAGAGTAGATTTTTATAg
gcatacacgctttttttataagaatattttctataagaatatcagggtga
aaattggccaaatcgtaagaataccctaagaataccctctaggttgagtt
tcacagaatttgataaaaatacagtcattttgtatttggttaaca
Run BLAST on NCBI

protein sequence of TCONS_00040946-protein

>TCONS_00040946-protein ID=TCONS_00040946-protein|Name=TCONS_00040946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
HRCLRKPCVILWCKSRSCVKQWPPFCPKNNFKDCLASKLADFGVSNDGGP
QHGLVTSDVIFYSTSLNKLTGFKDLDHKCDGLWNTINELKKTRKKHEQHS
SKSQQRASSAKTKSNR
Run BLAST on NCBI

transcript from alignment at sc0002639:2284..3253+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040946 ID=TCONS_00040946|Name=TCONS_00040946|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at sc0002639:2284..3253+ (Clytia hemisphaerica)
ACCACCGATGCCTTCGAAAACCATGCGTAATATTGTGGTGCAAGTCAAGA
AGTTGCGTGAAACAATGGCCGCCATTTTGTCCGAAGAACAACTTTAAAGA
CTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGC
CTCAGCACGGGTTCGTATATTTTCACTTGTATTTAATGCTTTATCCATCG
TTTNCGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGTTCGT
ATATTTTCACTTGTATTTAATGCTTTATTCATCGTTTATAGCCCCCCTTT
AAGAGCAATATGATTTTAAGTGTATGGTCATACAGTAACCATAAATGCCG
AAAATCCCCGGTTGGAAGATGTTTTAAAAAAAGGCGTGATTAATCGAGAA
TGAAGGTCTGTTTCAAGGTCATATTTCCCTGTTGGAGgagacaattaaaa
aaaatcttgaaaatcatCTTATGTTTTCTTTATAGATTGGTTACTTCAGA
TGTCATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAGATT
TGGATCATAAATGCGACGGACTTTGGAATACAATCAATGAACTTAAAAAA
ACTCGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGCTTC
GTCAGCAAAAACGAAAAGTAACAGGTGATCTCAGTTGATCCTTTTTAATg
gttatgtttttttgtaaaatgcagaacttttttataattttagacTGTTT
CTCGAGTCTGATTCTGTGACCTCTTATTTTGAGGGCAAAATTTTAAATCT
GTAGAGAGAGAGTAGATTTTTATAggcatacacgctttttttataagaat
attttctataagaatatcagggtgaaaattggccaaatcgtaagaatacc
ctaagaataccctctaggttgagtttcacagaatttgataaaaatacagt
cattttgtatttggttaaca

Coding sequence (CDS) from alignment at sc0002639:2284..3253+

>TCONS_00040946 ID=TCONS_00040946|Name=TCONS_00040946|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0002639:2284..3253+ (Clytia hemisphaerica)
CACCGATGCCTTCGAAAACCATGCGTAATATTGTGGTGCAAGTCAAGAAG
TTGCGTGAAACAATGGCCGCCATTTTGTCCGAAGAACAACTTTAAAGACT
GTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGCCT
CAGCACGGATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAA
TAAGTTGACGGGTTTCAAAGATTTGGATCATAAATGCGACGGACTTTGGA
ATACAATCAATGAACTTAAAAAAACTCGCAAAAAACATGAACAACATTCA
TCGAAAAGTCAGCAGCGGGCTTCGTCAGCAAAAACGAAAAGTAACAGGTG
ACACCGATGCCTTCGAAAACCATGCGTAATATTGTGGTGCAAGTCAAGAA
GTTGCGTGAAACAATGGCCGCCATTTTGTCCGAAGAACAACTTTAAAGAC
TGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGCC
TCAGCACGGATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGA
ATAAGTTGACGGGTTTCAAAGATTTGGATCATAAATGCGACGGACTTTGG
AATACAATCAATGAACTTAAAAAAACTCGCAAAAAACATGAACAACATTC
ATCGAAAAGTCAGCAGCGGGCTTCGTCAGCAAAAACGAAAAGTAACAGGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024997XLOC_024997Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040946-proteinTCONS_00040946-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040946-exon-sc0002639-1491911889:2284..2443TCONS_00040946-exon-sc0002639-1491911889:2284..2443Clytia hemisphaericaexon
TCONS_00040946-exon-sc0002639-1510915933:2284..2443TCONS_00040946-exon-sc0002639-1510915933:2284..2443Clytia hemisphaericaexon
TCONS_00040946-exon-sc0002639-1575043694:2284..2443TCONS_00040946-exon-sc0002639-1575043694:2284..2443Clytia hemisphaericaexon
TCONS_00040946-exon-sc0002639-1491911889:2769..3253TCONS_00040946-exon-sc0002639-1491911889:2769..3253Clytia hemisphaericaexon
TCONS_00040946-exon-sc0002639-1510915933:2769..3253TCONS_00040946-exon-sc0002639-1510915933:2769..3253Clytia hemisphaericaexon
TCONS_00040946-exon-sc0002639-1575043694:2769..3253TCONS_00040946-exon-sc0002639-1575043694:2769..3253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002639supercontigsc0002639:2284..3253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03991	3.82654	1.3889	0	6.56337	5.24043	5.57024	6.15058	2.38368	2.00313	4.31899	1.28941	2.84279	3.2881	3.51508	4.96378	2.10187	2.78195	0.845315	3.43395	2.49571	2.19037	9.697	5.14723	2.88613	3.16015	4.69334	1.24287	9.80313	6.76275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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