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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040937 ID=TCONS_00040937|Name=TCONS_00040937|organism=Clytia hemisphaerica|type=transcript|length=1134bp
TAGCAAGTCATCAGAAACACAACAAACAACAAGATGTGGTTTGAAGTCTC
CTTCAGTTTGCTTTTGTTCTATACAGCAACTGGTGTATCGACATGTAAAA
ATTCATGTGCCAGACAGCCTAATTGGTGTGGCCACGCTGGTGCTACCTTT
ACATTCATGGATTGCGACAATGACGGAAAACTTGATCCTGTATGTTCAGA
CAAAAATGGAAACTTTGGTGTCATCGGATTGACAAATGGATGCAGAGGAA
AATGGCCCAAAGAAACATGCAAAAACCCCAAAGGAAACATTTTGTTCTCG
ATCAAAAGGATGGTGTGGTCATGCAGGAGCAACTTATTTCTACCAAGATT
GTGATGGTGACGGTATCTTGGATCCAATTTGTTCTGACACCAATGGTAAC
TTGGGAATCAtcaaaagctctcaaaaatgtAAATCCGAATGGCCGCATGC
AGTATGCAGAGCTAAAGGAGCAACATGCGTTTCTTGCAGAAGACACAAAA
GTTGGTGCAGTCATGCTAAATCTGTTTACATCTTGATGGATTGTGACGGT
GACGGTACTCCTGATCCAGTTTGATCAGATACCAATGGAAATCTGGGTGT
CATCCAAAGTTCCAAAGGATGCCCTTCAGTTTGGCCTAAAGCTTCCTGTA
CAACCAAGAAAGGCAAAGTGTGTGCTCGACCAAAAGGATGGTGCGGTCAT
GCTGGATCAACATTTGTCTTCAAGGATTGTGATGGAGATGGGATCCCAGA
CCCTGTCTGCAGTGACAAGAATGGAAGTCTTGCAGTGCGCAAAAGCTCCA
AAGGATGCAGTGACAGCTGGCCAAACGACGTTTGCACCAATAAATAAATC
AGATATTAAGAACATTAACAAAACAGTTAGTTATATTACACCTGTGTAAT
GTggtttaaaagtttttcttaaATACCTGGTTGGTTTTGTATTTTACGAG
AAATTCATATcttatcttttgaaattttgtagaATAGGAGGAAATTATTA
TTTAATATTGTTGTGGAAACAGAAATATCATTATTTGGGTAGACTGTTAT
AGGGGAGAAAAAAGTattaaaacaacaaaatgaaagttttcccacaatct
cggtcaaaatatattgagaattttggttgattcc Run BLAST on NCBI protein sequence of TCONS_00040937-protein >TCONS_00040937-protein ID=TCONS_00040937-protein|Name=TCONS_00040937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MDAEENGPKKHAKTPKETFCSRSKGWCGHAGATYFYQDCDGDGILDPICS
DTNGNLGIIKSSQKCKSEWPHAVCRAKGATCVSCRRHKSWCSHAKSVYIL
MDCDGDGTPDPV Run BLAST on NCBI transcript from alignment at sc0002630:6179..7312 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040937 ID=TCONS_00040937|Name=TCONS_00040937|organism=Clytia hemisphaerica|type=transcript|length=1134bp|location=Sequence derived from alignment at sc0002630:6179..7312 (Clytia hemisphaerica)
ggaatcaaccaaaattctcaatatattttgaccgagattgtgggaaaact
ttcattttgttgttttaatACTTTTTTCTCCCCTATAACAGTCTACCCAA
ATAATGATATTTCTGTTTCCACAACAATATTAAATAATAATTTCCTCCTA
TtctacaaaatttcaaaagataagATATGAATTTCTCGTAAAATACAAAA
CCAACCAGGTATttaagaaaaacttttaaaccACATTACACAGGTGTAAT
ATAACTAACTGTTTTGTTAATGTTCTTAATATCTGATTTATTTATTGGTG
CAAACGTCGTTTGGCCAGCTGTCACTGCATCCTTTGGAGCTTTTGCGCAC
TGCAAGACTTCCATTCTTGTCACTGCAGACAGGGTCTGGGATCCCATCTC
CATCACAATCCTTGAAGACAAATGTTGATCCAGCATGACCGCACCATCCT
TTTGGTCGAGCACACACTTTGCCTTTCTTGGTTGTACAGGAAGCTTTAGG
CCAAACTGAAGGGCATCCTTTGGAACTTTGGATGACACCCAGATTTCCAT
TGGTATCTGATCAAACTGGATCAGGAGTACCGTCACCGTCACAATCCATC
AAGATGTAAACAGATTTAGCATGACTGCACCAACTTTTGTGTCTTCTGCA
AGAAACGCATGTTGCTCCTTTAGCTCTGCATACTGCATGCGGCCATTCGG
ATTTacatttttgagagcttttgaTGATTCCCAAGTTACCATTGGTGTCA
GAACAAATTGGATCCAAGATACCGTCACCATCACAATCTTGGTAGAAATA
AGTTGCTCCTGCATGACCACACCATCCTTTTGATCGAGAACAAAATGTTT
CCTTTGGGGTTTTTGCATGTTTCTTTGGGCCATTTTCCTCTGCATCCATT
TGTCAATCCGATGACACCAAAGTTTCCATTTTTGTCTGAACATACAGGAT
CAAGTTTTCCGTCATTGTCGCAATCCATGAATGTAAAGGTAGCACCAGCG
TGGCCACACCAATTAGGCTGTCTGGCACATGAATTTTTACATGTCGATAC
ACCAGTTGCTGTATAGAACAAAAGCAAACTGAAGGAGACTTCAAACCACA
TCTTGTTGTTTGTTGTGTTTCTGATGACTTGCTA Coding sequence (CDS) from alignment at sc0002630:6179..7312 >TCONS_00040937 ID=TCONS_00040937|Name=TCONS_00040937|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0002630:6179..7312 (Clytia hemisphaerica)
TCAAACTGGATCAGGAGTACCGTCACCGTCACAATCCATCAAGATGTAAA
CAGATTTAGCATGACTGCACCAACTTTTGTGTCTTCTGCAAGAAACGCAT
GTTGCTCCTTTAGCTCTGCATACTGCATGCGGCCATTCGGATTTacattt
ttgagagcttttgaTGATTCCCAAGTTACCATTGGTGTCAGAACAAATTG
GATCCAAGATACCGTCACCATCACAATCTTGGTAGAAATAAGTTGCTCCT
GCATGACCACACCATCCTTTTGATCGAGAACAAAATGTTTCCTTTGGGGT
TTTTGCATGTTTCTTTGGGCCATTTTCCTCTGCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040937-exon-sc0002630-1491911889:6179..7312 | TCONS_00040937-exon-sc0002630-1491911889:6179..7312 | Clytia hemisphaerica | exon |
| TCONS_00040937-exon-sc0002630-1510915933:6179..7312 | TCONS_00040937-exon-sc0002630-1510915933:6179..7312 | Clytia hemisphaerica | exon |
| TCONS_00040937-exon-sc0002630-1575043694:6179..7312 | TCONS_00040937-exon-sc0002630-1575043694:6179..7312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002630 | supercontig | sc0002630:6179..7312 . |
Blast
The following BLAST results are available for this feature:
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