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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040936 ID=TCONS_00040936|Name=TCONS_00040936|organism=Clytia hemisphaerica|type=transcript|length=1317bp
AATCCATCATGGATGGAACAAACATAATTGGTTACATCATCCAAAGCTGA
AAATTCCAGCAAAATTGACCTGCCATtgtctttttcaacaaatttgccTT
CACCGTCACAACTTTGACAATTAAACatgtaaattttatatttttctttt
ttcaattttaatttcaatattgCAACGCAATGgtcattaataaaaataat
tgcTCCAGTAACGTGTTCACTAACAAAAATATTTGTGTCAACTGCACTCT
CATCTTGAAGTGTATCAATGCATATATCAACTTGGCGAACAACTGTTATT
TCAAACTGGTTATTTTCTATTACAACACGTTGAGGTATTTCATCAATAGT
TAACGACAGATTTAAAGAAGTATCCTTGAAGATCTTGTCACCAGAATgca
aaataaaatccaaatcAAAATCTTTCCAAATGTTAATATTTCTAACCTTT
GTCCAACATATCGAAAAAAGTGAATTTGTAGTAGATTGTTTATCAGCACT
TACCCCAAACATTTCATGAGCTTGGTTAAAGTTTCCTTGCACAATTTTAC
TGTTGTCAGTTTTTGGACCTGGGTTGAGTTCTATATCCCCTGATAGTAGC
AGTGTGTAATTAACTTTCATAAATATAAGGTTTGAATCTATAAGGCTATA
AGTAACGTTCGGATATGGAACAAACATACCATTTCTGGAAAGATGTAAAA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGCTTTGAC
ACAGGGAAGACCTTCACTATAGAAAATAGCTAAGAATCTTTGAATGACTG
CTTGTTCTAAAAAGAACACAGCAAATCAAAGTATGTTATATGATTGCTTT
AcacgaaaatgttgaaaaacacTACACAGTCTCAATGTGAAACTTACTGT
AAAGAGAAGAGTGAGCTCAAGNCCAGTGGTGTTTCGAGAAATGTTATCTC
GTACGATTTGGGAATTGCAACGAAAAGGAAGAATAAAAGGGCTACAAATC
GCATTggtctaaaatttgaaaaatagcaTTATTGCAAAGGAAAGAACCAA
TAACAATAGACTTACTAACACCTTTTACATTGCGCTGAGCTGTAAAAGCA
AAACTTCCTATACATGCGCGATAGGCTTCGATGGATATCATATTGCAATT
CTGTAAGCTTTAGCAAAAGTAAGGTGAAAGGttttcaaaaagtatatgaa
tatttGTATATATCTTATCTCACGTGTTTGGTATATAAGAAGGTAGAGGT
GTAGGTATTAGGGAAAGGTTTTGTTTGTACAAGGTTTTTATTATATATAC
GTATATAAGTTTCAAAG Run BLAST on NCBI transcript from alignment at sc0002630:18429..19872- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040936 ID=TCONS_00040936|Name=TCONS_00040936|organism=Clytia hemisphaerica|type=transcript|length=1444bp|location=Sequence derived from alignment at sc0002630:18429..19872- (Clytia hemisphaerica)
AATCCATCATGGATGGAACAAACATAATTGGTTACATCATCCAAAGCTGA
AAATTCCAGCAAAATTGACCTGCCATTGTCTTTTTCAACAAATTTGCCTT
CACCGTCACAACTTTGACAATTAAACATGTAAATTTTATATTTTTCTTTT
TTCAATTTTAATTTCAATATTGCAACGCAATGGTCATTAATAAAAATAAT
TGCTCCAGTAACGTGTTCACTAAATAATAGACCAAAAATATTTGTGTCAA
CTGCACTCTCATCTTGANTTCAATTTTAATTTCAATATTGCAACGCAATG
GTCATTAATAAAAATAATTGCTCCAGTAACGTGTTCACTAAATAATAGAC
CAAAAATATTTGTGTCAACTGCACTCTCATCTTGAAGTGTATCAATGCAT
ATATCAACTTGGCGAACAACTGTTATTTCAAACTGGTTATTTTCTATTAC
AACACGTTGAGGTATTTCATCAATAGTTAACGACAGATTTAAAGAAGTAT
CCTTGAAGATCTTGTCACCAGAATGCAAAATAAAATCCAAATCAAAATCT
TTCCAAATGTTAATATTTCTAACCTTTGTCCAACATATCGAAAAAAGTGA
ATTTGTAGTAGATTGTTTATCAGCACTTACCCCAAACATTTCATGAGCTT
GGTTAAAGTTTCCTTGCACAATTTTACTGTTGTCAGTTTTTGGACCTGGG
TTGAGTTCTATATCCCCTGATAGTAGCAGTGTGTAATTAACTTTCATAAA
TATAAGGTTTGAATCTATAAGGCTATAAGTAACGTTCGGATATGGAACAA
ACATACCATTTCTGGAAAGATGTAAAAAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTCCTGCTTTGACACAGGGAAGACCTTCACTATAGA
AAATAGCTAAGAATCTTTGAATGACTGCTTGTTCTAAAAAGAACACAGCA
AATCAAAGTATGTTATATGATTGCTTTACACGAAAATGTTGAAAAACACT
ACACAGTCTCAATGTGAAACTTACTGTAAAGAGAAGAGTGAGCTCAAGNC
CAGTGGTGTTTCGAGAAATGTTATCTCGTACGATTTGGGAATTGCAACGA
AAAGGAAGAATAAAAGGGCTACAAATCGCATTGGTCTAAAATTTGAAAAA
TAGCATTATTGCAAAGGAAAGAACCAATAACAATAGACTTACTAACACCT
TTTACATTGCGCTGAGCTGTAAAAGCAAAACTTCCTATACATGCGCGATA
GGCTTCGATGGATATCATATTGCAATTCTGTAAGCTTTAGCAAAAGTAAG
GTGAAAGGTTTTCAAAAAGTATATGAATATTTGTATATATCTTATCTCAC
GTGTTTGGTATATAAGAAGGTAGAGGTGTAGGTATTAGGGAAAGGTTTTG
TTTGTACAAGGTTTTTATTATATATACGTATATAAGTTTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040936-exon-sc0002630-1575043694:19650..19872 | TCONS_00040936-exon-sc0002630-1575043694:19650..19872 | Clytia hemisphaerica | exon |
| TCONS_00040936-exon-sc0002630-1575043694:18429..19522 | TCONS_00040936-exon-sc0002630-1575043694:18429..19522 | Clytia hemisphaerica | exon |
| TCONS_00040936-exon-sc0002630-1510915933:19650..19872 | TCONS_00040936-exon-sc0002630-1510915933:19650..19872 | Clytia hemisphaerica | exon |
| TCONS_00040936-exon-sc0002630-1510915933:18429..19522 | TCONS_00040936-exon-sc0002630-1510915933:18429..19522 | Clytia hemisphaerica | exon |
| TCONS_00040936-exon-sc0002630-1491911889:19650..19872 | TCONS_00040936-exon-sc0002630-1491911889:19650..19872 | Clytia hemisphaerica | exon |
| TCONS_00040936-exon-sc0002630-1491911889:18429..19522 | TCONS_00040936-exon-sc0002630-1491911889:18429..19522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002630 | supercontig | sc0002630:18429..19872 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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