TCONS_00040935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040935
Unique NameTCONS_00040935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040935 ID=TCONS_00040935|Name=TCONS_00040935|organism=Clytia hemisphaerica|type=transcript|length=540bp
CCGGGAATTAAAATAGATCCTATACAATTGTGGTGAAGCAGGGTGAAGTA
ATATCAAAATAATCATATGGAAATCTTGTATAAAAGTTTCGGCAAATAAC
AACAGCTCACTTACACAAACGATCTTGGTAtaaactggtgaaacagctaA
ACATTCGACTCTGGTGGACTGCTAGAACTTGCAAAAGGAATCTAGCTCTT
GTTCAGTTTAGCTGAGATTTGTAGACCAAAGAGTTTTCTTAACAGCCCCG
GTTGCATAAGCATGGGTTTGTTGAAGGTCTGTTTGACGTTCTGTTTGGTC
ATTGCTGTGGTCGTTGAAAGCAGAAGAATCACGAAGTTGGAacgaattga
aaatgttttgaaaagaacGAACCGTATTCTTGACGATTTGAAGAGAGAAG
tttccGTTAAAAGTGACGATGCTTCTTGTGAAGATGAAGCGCCAAATTGT
GGAAAATGGAAAGAAAAAGATGGTGATAAGTGGGAAGAAAATTGTGCAAC
CAGGCCATTCCTTCAGTCACATTGCAGAAAGTCTTGTAAC
Run BLAST on NCBI

transcript from alignment at sc0002630:1557..2318-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040935 ID=TCONS_00040935|Name=TCONS_00040935|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0002630:1557..2318- (Clytia hemisphaerica)
CCGGGAATTAAAATAGATCCTATACAATTGTGGTGAAGCAGGGTGAAGTA
ATATCAAAATAATCATATGGAAATCTTGTATAAAAGTTTCGGCAAATAAC
AACAGCTCACTTACACAAACGATCTTGGTATAAACTGGTGAAACAGCTAA
ACATTCGACTCTGGTGGACTGCTAGAACTTGCAAAAGGAATCTAGCTCTT
GTTCAGTTTAGCTGAGATTTGTAGACCAAAGAGTTTTCTTAACAGCCCCG
GTTGCATAAGCATGGGTTTGTTGAAGGTCTGTTTGACGTTCTGTTTGGTC
ATTGCTGTGGTCGTTGAAAGCAGAAGAATCACGAAGTTGGAACGAATTGA
AAATGTTTTGAAAAGAACGAACCGTATTCTTGACGATTTGAAGAGAGAAG
GTATGGGTGTATCATGTTTTTAAGTTGTTTTCACTTCCCAACCAAAGTGC
AATGTTTCAGATCACAGACTGTAGTACACCGGTGATTGAGTTGCAGTAAT
GAGCCTGAATGATCCATGTCCAACTATAAAATTAATTAAATCTCTATGGT
TTAGTGCTCAAAAGTTCCATGCTTTTCACCTTTAAAATCACTTATGCCAG
CTTATGCATTTTTATTTTTTAGTTTCCGTTAAAAGTGACGATGCTTCTTG
TGAAGATGAAGCGCCAAATTGTGGAAAATGGAAAGAAAAAGATGGTGATA
AGTGGGAAGAAAATTGTGCAACCAGGCCATTCCTTCAGTCACATTGCAGA
AAGTCTTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024986XLOC_024986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040935-exon-sc0002630-1575043694:1919..2318TCONS_00040935-exon-sc0002630-1575043694:1919..2318Clytia hemisphaericaexon
TCONS_00040935-exon-sc0002630-1575043694:1557..1696TCONS_00040935-exon-sc0002630-1575043694:1557..1696Clytia hemisphaericaexon
TCONS_00040935-exon-sc0002630-1510915933:1919..2318TCONS_00040935-exon-sc0002630-1510915933:1919..2318Clytia hemisphaericaexon
TCONS_00040935-exon-sc0002630-1510915933:1557..1696TCONS_00040935-exon-sc0002630-1510915933:1557..1696Clytia hemisphaericaexon
TCONS_00040935-exon-sc0002630-1491911889:1919..2318TCONS_00040935-exon-sc0002630-1491911889:1919..2318Clytia hemisphaericaexon
TCONS_00040935-exon-sc0002630-1491911889:1557..1696TCONS_00040935-exon-sc0002630-1491911889:1557..1696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002630supercontigsc0002630:1557..2318 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386233	0.881835	0	0.188923	0	0	0	0	0.270964	0.376709	0.108591	0.214151	18.2913	16.2309	0.0608623	0	9.9887	11.8341	52.9708	81.7527	20.8827	18.2771	10.2536	7.96747	3.92142	5.33372	2.25054	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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