TCONS_00040934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040934
Unique NameTCONS_00040934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040934 ID=TCONS_00040934|Name=TCONS_00040934|organism=Clytia hemisphaerica|type=transcript|length=591bp
CAGCGATGATCGATCCGATGACCCCTGAATGGTGGTTGCCGCTTTTGTTG
CGAGTCTACCTAGGACTCGGGCTAGAGCTTTTAACTTGTTTTTGACCCAT
TCTTTGACTGTGTTTGGATTTTTGGAAGGAGCTGAAGATCCTCCTATACT
ACCACTTCCTGCTAAAGAGGTGACAATAGTTGAAATAAGCAATCCAACAG
CAGTCAATATGGCTGTTATAGTTAATCCATGTTCTCTAAAAACGAGCTTG
ACTTTTTCTCGCAGGCTCAGATCATCTTCACATAGTTCATACAGAGTGTC
TCGAATACGAGCAATTTGACTCGTGAGTTCTTTTCGATTTTGAGAAGCAA
TTTCAAGCCTGATTTTACGTTCTTGCTGCAGTTCATTCAATCTGGATTTG
AGTTCATTTTGTTCTTGAGGATCTTGAGTGTTTTTGAGTTCATCGCGTAT
TCCCTTAATTTGATCGTCGACTTCTGACAATTTTGAAGCATTATTTTGAA
GTTCAACTTTAAATCTCGTCAGTGCTTTGTCAATGCCGAGAAACTTTCGC
ATGTCTAGGTCAGTATTGCAACTGAAACTACTTCTTTAAGG
Run BLAST on NCBI

protein sequence of TCONS_00040934-protein

>TCONS_00040934-protein ID=TCONS_00040934-protein|Name=TCONS_00040934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MRKFLGIDKALTRFKVELQNNASKLSEVDDQIKGIRDELKNTQDPQEQNE
LKSRLNELQQERKIRLEIASQNRKELTSQIARIRDTLYELCEDDLSLREK
VKLVFREHGLTITAILTAVGLLISTIVTSLAGSGSIGGSSAPSKNPNTVK
EWVKNKLKALARVLGRLATKAATTIQGSSDRSSL
Run BLAST on NCBI

transcript from alignment at sc0002629:13464..14054

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040934 ID=TCONS_00040934|Name=TCONS_00040934|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at sc0002629:13464..14054 (Clytia hemisphaerica)
CCTTAAAGAAGTAGTTTCAGTTGCAATACTGACCTAGACATGCGAAAGTT
TCTCGGCATTGACAAAGCACTGACGAGATTTAAAGTTGAACTTCAAAATA
ATGCTTCAAAATTGTCAGAAGTCGACGATCAAATTAAGGGAATACGCGAT
GAACTCAAAAACACTCAAGATCCTCAAGAACAAAATGAACTCAAATCCAG
ATTGAATGAACTGCAGCAAGAACGTAAAATCAGGCTTGAAATTGCTTCTC
AAAATCGAAAAGAACTCACGAGTCAAATTGCTCGTATTCGAGACACTCTG
TATGAACTATGTGAAGATGATCTGAGCCTGCGAGAAAAAGTCAAGCTCGT
TTTTAGAGAACATGGATTAACTATAACAGCCATATTGACTGCTGTTGGAT
TGCTTATTTCAACTATTGTCACCTCTTTAGCAGGAAGTGGTAGTATAGGA
GGATCTTCAGCTCCTTCCAAAAATCCAAACACAGTCAAAGAATGGGTCAA
AAACAAGTTAAAAGCTCTAGCCCGAGTCCTAGGTAGACTCGCAACAAAAG
CGGCAACCACCATTCAGGGGTCATCGGATCGATCATCGCTG

Coding sequence (CDS) from alignment at sc0002629:13464..14054

>TCONS_00040934 ID=TCONS_00040934|Name=TCONS_00040934|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0002629:13464..14054 (Clytia hemisphaerica)
ATGCGAAAGTTTCTCGGCATTGACAAAGCACTGACGAGATTTAAAGTTGA
ACTTCAAAATAATGCTTCAAAATTGTCAGAAGTCGACGATCAAATTAAGG
GAATACGCGATGAACTCAAAAACACTCAAGATCCTCAAGAACAAAATGAA
CTCAAATCCAGATTGAATGAACTGCAGCAAGAACGTAAAATCAGGCTTGA
AATTGCTTCTCAAAATCGAAAAGAACTCACGAGTCAAATTGCTCGTATTC
GAGACACTCTGTATGAACTATGTGAAGATGATCTGAGCCTGCGAGAAAAA
GTCAAGCTCGTTTTTAGAGAACATGGATTAACTATAACAGCCATATTGAC
TGCTGTTGGATTGCTTATTTCAACTATTGTCACCTCTTTAGCAGGAAGTG
GTAGTATAGGAGGATCTTCAGCTCCTTCCAAAAATCCAAACACAGTCAAA
GAATGGGTCAAAAACAAGTTAAAAGCTCTAGCCCGAGTCCTAGGTAGACT
CGCAACAAAAGCGGCAACCACCATTCAGGGGTCATCGGATCGATCATCGC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024985XLOC_024985Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040934-exon-sc0002629-1491911889:13464..14054TCONS_00040934-exon-sc0002629-1491911889:13464..14054Clytia hemisphaericaexon
TCONS_00040934-exon-sc0002629-1510915933:13464..14054TCONS_00040934-exon-sc0002629-1510915933:13464..14054Clytia hemisphaericaexon
TCONS_00040934-exon-sc0002629-1575043694:13464..14054TCONS_00040934-exon-sc0002629-1575043694:13464..14054Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040934-proteinTCONS_00040934-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002629supercontigsc0002629:13464..14054 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0989705	0	0	0	0	0	0	0.0617674	0	0	0	0	0	0	0	0.179591	0	0	0	0.0997143	0.177985	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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