TCONS_00040933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040933
Unique NameTCONS_00040933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040933 ID=TCONS_00040933|Name=TCONS_00040933|organism=Clytia hemisphaerica|type=transcript|length=277bp
GCGTGATGTTATTATGTGCGATAGTTGTTCTCGAGTAATCTTTATGATTC
ATGCTAACACTCCATTGCCCTGGCGTTTATTGCTGAATTTCGATCGAATT
GACGGTAACCTGAATGTCTCTTTGGACCAGAGCCACCTGACAATTGTCAG
CAAGACCGAAGTCTAACCAATCCGTGTTATTCAACTCAACTACGGGGGAG
TGCGCACTCATGCAAGTTTTACAACCAGGATATGAGAGATCTGCAATTGC
TTTCGCACTGCGTGAGATTTGAACTCG
Run BLAST on NCBI

transcript from alignment at sc0002629:8224..8500

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040933 ID=TCONS_00040933|Name=TCONS_00040933|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at sc0002629:8224..8500 (Clytia hemisphaerica)
CGAGTTCAAATCTCACGCAGTGCGAAAGCAATTGCAGATCTCTCATATCC
TGGTTGTAAAACTTGCATGAGTGCGCACTCCCCCGTAGTTGAGTTGAATA
ACACGGATTGGTTAGACTTCGGTCTTGCTGACAATTGTCAGGTGGCTCTG
GTCCAAAGAGACATTCAGGTTACCGTCAATTCGATCGAAATTCAGCAATA
AACGCCAGGGCAATGGAGTGTTAGCATGAATCATAAAGATTACTCGAGAA
CAACTATCGCACATAATAACATCACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024984XLOC_024984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040933-exon-sc0002629-1491911889:8224..8500TCONS_00040933-exon-sc0002629-1491911889:8224..8500Clytia hemisphaericaexon
TCONS_00040933-exon-sc0002629-1510915933:8224..8500TCONS_00040933-exon-sc0002629-1510915933:8224..8500Clytia hemisphaericaexon
TCONS_00040933-exon-sc0002629-1575043694:8224..8500TCONS_00040933-exon-sc0002629-1575043694:8224..8500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002629supercontigsc0002629:8224..8500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	5.24228	5.12875	0	0.548212	0.661394	0	0.433509	6.44365	1.56359	1.71307	1.36855	2.13188	1.46058	0.940456	0.386188	0	0	1.1445	0.49739	0.727828	0	0.536257	1.10466	0.985886	0	0.752821	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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