TCONS_00040932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040932
Unique NameTCONS_00040932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040932 ID=TCONS_00040932|Name=TCONS_00040932|organism=Clytia hemisphaerica|type=transcript|length=232bp
TACCATGGATACTGGAAATTTTGCCAGTCCAACATTCTTGCCCTTGCTTT
ACATTGACTGTTTCTCCTAGTGCAACGCCGTTTGGTGCAATCACTTTGTT
TGCTGACAATACATCGGATGTGTTTTCGTTGACCCAATCAACAATCAGAA
AATCTGGCATTATTATGAGACGATCAATTAATGACAAAATAAAACTCTGA
CAAAAGGCTTTTGTATAGAGCTTTGTATAGCA
Run BLAST on NCBI

transcript from alignment at sc0002626:10888..11119

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040932 ID=TCONS_00040932|Name=TCONS_00040932|organism=Clytia hemisphaerica|type=transcript|length=232bp|location=Sequence derived from alignment at sc0002626:10888..11119 (Clytia hemisphaerica)
TGCTATACAAAGCTCTATACAAAAGCCTTTTGTCAGAGTTTTATTTTGTC
ATTAATTGATCGTCTCATAATAATGCCAGATTTTCTGATTGTTGATTGGG
TCAACGAAAACACATCCGATGTATTGTCAGCAAACAAAGTGATTGCACCA
AACGGCGTTGCACTAGGAGAAACAGTCAATGTAAAGCAAGGGCAAGAATG
TTGGACTGGCAAAATTTCCAGTATCCATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024983XLOC_024983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040932-exon-sc0002626-1491911889:10888..11119TCONS_00040932-exon-sc0002626-1491911889:10888..11119Clytia hemisphaericaexon
TCONS_00040932-exon-sc0002626-1510915933:10888..11119TCONS_00040932-exon-sc0002626-1510915933:10888..11119Clytia hemisphaericaexon
TCONS_00040932-exon-sc0002626-1575043694:10888..11119TCONS_00040932-exon-sc0002626-1575043694:10888..11119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002626supercontigsc0002626:10888..11119 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.04592	0.997545	0	1.13316	15.1747	13.0813	1.31517	3.69375	0	1.06776	0	1.36257	0	1.41307	0	0.623362	1.53586	1.57421	0	3.41374	0	1.44728	0	2.13268	0	0	0	1.49698	0	1.1568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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